2014-04-30 release

Bug fix release
2014-04-30 release image
  • marked CVO as abbrev. See #440
  • obsoleted embryonic MB/HB boundary. Issue #438
  • WBbt relations
  • Defs for future germ layers. Issue #438
  • olfactory epithelium DF prim. olf. epithelium PO olf. placode. todo: other parts of placode.Issue #438
  • Some refactoring of nephron development, spurred by #438
  • merged primitive ventricle of heart and future cardiac ventricle. Issue #435
  • merged postzygapophysis
  • Fixed logical definitions for bone form of metatarsals and metacarpals. Issue #429
  • Fixed logical definitions for cartilage and pre-cartilage form of metatarsals. Issue #429
  • Fixed logical definitions for cartilage form of metacarpals. Issue #429
  • Fixed logical definitions for pre-cartilage form of manual and pedial phalanges
  • Fixed logical definitions for cartilage form of manual and pedial phalanges. Issue #429
  • Rename juvenile. Fixes #427
  • fixed rib sekeleton, issue #431

Ontology Diff Report

Original Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-04-23/uberon.owl

New Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-04-30/uberon.owl

Report for classes

Class objects lost from source: 1

Class objects new in target: 30

New Class : dorsal iliac ridge

New Class : tectorial restraint system

New Class : nuchal crest

New Class : sacral rib

New Class : spinous region of dorsal fin

New Class : obsolete postzygapophysis

New Class : zygantrum

New Class : axis intercentrum

New Class : pre-axial region

New Class : glenoid region

New Class : pleurocentrum

New Class : atlas intercentrum

New Class : posterodorsal process of ilium

New Class : intercentrum

New Class : sallet sensory system

New Class : anterior humeral ridge

New Class : incisor process

New Class : humeral facet of the ulna

New Class : ulnar facet of the humerus

New Class : zygosphene

New Class : prezygapophyses

New Class : hemipenal sheath

New Class : spiracular notch

New Class : anterior distal condyle of femur

New Class : dermal intracranial joint

New Class : radial facet

New Class : extratemporal bone

New Class : trunk rib

New Class : presacral rib

New Class : posterior distal condyle of femur

Changed Class objects: 299

Changes for: propterygium bone

Changes for: metapterygium bone

Changes for: mesopterygium bone

Changes for: lateral ethmoid cartilage

Changes for: anal fin distal radial cartilage

Changes for: dorsal fin proximal radial cartilage

Changes for: dorsal fin distal radial cartilage

Changes for: vagus nerve nucleus

Changes for: tertial remex feather

  • Deleted
    • - tertial remex feather comment ertials are connected to the humerus in some species. These elongated “true” tertials act as a protective cover for all or part of the folded primaries and secondaries, and do not qualify as flight feathers as such.[11] However, many authorities use the term tertials to refer to the shorter, more symmetrical innermost secondaries of passerines (which perform the same function as true tertials) in an effort to distinguish them from the other secondaries.
  • Added
    • + tertial remex feather comment tertials are connected to the humerus in some species. These elongated “true” tertials act as a protective cover for all or part of the folded primaries and secondaries, and do not qualify as flight feathers as such.[11] However, many authorities use the term tertials to refer to the shorter, more symmetrical innermost secondaries of passerines (which perform the same function as true tertials) in an effort to distinguish them from the other secondaries.
    • + tertial remex feather has exact synonym true tertial

Changes for: obsolete diverticulum

Changes for: radial cartilage

Changes for: anal fin proximal radial cartilage

Changes for: dorsal fin proximal radial cartilage 2

Changes for: dorsal fin proximal radial cartilage 1

Changes for: olfactory epithelium

Changes for: pectoral fin radial cartilage

Changes for: pectoral fin distal radial cartilage

Changes for: pectoral fin proximal radial cartilage

Changes for: telencephalon

Changes for: metencephalon

Changes for: midbrain

Changes for: pigmented layer of retina

Changes for: anal fin radial cartilage

Changes for: dorsal fin radial cartilage

Changes for: dorsal fin middle radial cartilage

Changes for: anal fin middle radial cartilage

Changes for: surface of mandible

Changes for: trigeminal ganglion

Changes for: supraoptic crest

Changes for: abducens nucleus

Changes for: motor nucleus of trigeminal nerve

Changes for: facial muscle

Changes for: median fin radial bone

Changes for: median fin proximal radial bone

Changes for: facial nerve

  • Deleted

Changes for: midbrain hindbrain boundary neural plate

Changes for: hindbrain neural plate

Changes for: future myelencephalon

Changes for: future hindbrain meninges

Changes for: future metencephalon

Changes for: hindbrain nucleus

Changes for: dorsal fin proximal radial bone 8

Changes for: dorsal fin proximal radial bone 3

Changes for: dorsal fin proximal radial bone 7

Changes for: dorsal fin proximal radial bone 6

Changes for: dorsal fin proximal radial bone 5

Changes for: dorsal fin proximal radial bone 4

Changes for: rib skeletal system

Changes for: dorsal fin distal radial bone 1

Changes for: dorsal fin distal radial bone 2

Changes for: dorsal fin distal radial bone 7

Changes for: dorsal fin distal radial bone 8

Changes for: dorsal fin distal radial bone 5

Changes for: dorsal fin distal radial bone 6

Changes for: dorsal fin distal radial bone 3

Changes for: dorsal fin distal radial bone 4

Changes for: principal sensory nucleus of trigeminal nerve

Changes for: obsolete embryonic midbrain hindbrain boundary

Changes for: metacarpal bone of digit 5

Changes for: metacarpal bone of digit 4

Changes for: metacarpal bone of digit 3

Changes for: metacarpal bone of digit 2

Changes for: endocardium of left ventricle

Changes for: metacarpal bone of digit 1

Changes for: metatarsal bone of digit 4

Changes for: metatarsal bone of digit 5

Changes for: metatarsal bone of digit 1

Changes for: metatarsal bone of digit 2

Changes for: metatarsal bone of digit 3

Changes for: segmental subdivision of hindbrain

Changes for: ventral nucleus of lateral lemniscus

Changes for: upper rhombic lip

Changes for: lower rhombic lip

Changes for: glans penis

Changes for: nephron

Changes for: lamina terminalis of cerebral hemisphere

Changes for: diffuse reticular nucleus

Changes for: pedal digit 1 metatarsal pre-cartilage condensation

Changes for: pedal digit 2 metatarsal pre-cartilage condensation

Changes for: pedal digit 3 metatarsal pre-cartilage condensation

Changes for: primitive mesonephric nephron

Changes for: primitive metanephric nephron

Changes for: primitive nephron

Changes for: manual digit 5 metacarpus pre-cartilage condensation

Changes for: manual digit 1 metacarpus pre-cartilage condensation

Changes for: manual digit 2 metacarpus pre-cartilage condensation

Changes for: manual digit 3 metacarpus pre-cartilage condensation

Changes for: manual digit 4 metacarpus pre-cartilage condensation

Changes for: pedal digit 5 metatarsal cartilage element

Changes for: pedal digit 4 metatarsal cartilage element

Changes for: pedal digit 2 metatarsal cartilage element

Changes for: pedal digit 3 metatarsal cartilage element

Changes for: pedal digit 1 metatarsal cartilage element

Changes for: pedal digit 5 metatarsal pre-cartilage condensation

Changes for: pedal digit 4 metatarsal pre-cartilage condensation

Changes for: pedal digit 1 phalanx pre-cartilage condensation

Changes for: pedal digit 2 phalanx pre-cartilage condensation

Changes for: pedal digit 3 phalanx pre-cartilage condensation

Changes for: pedal digit 4 phalanx pre-cartilage condensation

Changes for: pedal digit 5 phalanx pre-cartilage condensation

Changes for: pedal digit phalanx pre-cartilage condensation

Changes for: manual digit phalanx pre-cartilage condensation

Changes for: manual digit 5 phalanx pre-cartilage condensation

Changes for: manual digit 4 phalanx pre-cartilage condensation

Changes for: manual digit 3 phalanx pre-cartilage condensation

Changes for: manual digit 2 phalanx pre-cartilage condensation

Changes for: premaxilla

Changes for: manual digit 1 metacarpus cartilage element

Changes for: manual digit 2 metacarpus cartilage element

Changes for: manual digit 5 metacarpus cartilage element

Changes for: manual digit 1 phalanx pre-cartilage condensation

Changes for: manual digit 3 metacarpus cartilage element

Changes for: manual digit 4 metacarpus cartilage element

Changes for: laterodorsal tegmental nucleus

Changes for: rib

Changes for: surface of cartilage

Changes for: fin radial skeleton

Changes for: medullary command nucleus

Changes for: dorsal fin proximal radial cartilage 5

Changes for: dorsal fin proximal radial cartilage 4

Changes for: dorsal fin proximal radial cartilage 3

Changes for: dorsal fin proximal radial cartilage 8

Changes for: dorsal fin proximal radial cartilage 7

Changes for: dorsal fin proximal radial cartilage 6

Changes for: dorsal fin distal radial cartilage 6

Changes for: dorsal fin distal radial cartilage 5

Changes for: dorsal fin distal radial cartilage 8

Changes for: dorsal fin distal radial cartilage 7

Changes for: dorsal fin distal radial cartilage 2

Changes for: dorsal fin distal radial cartilage 1

Changes for: dorsal fin distal radial cartilage 4

Changes for: dorsal fin distal radial cartilage 3

Changes for: pontine nuclear group

Changes for: median fin proximal radial cartilage

Changes for: median fin radial cartilage

Changes for: endocardium

Changes for: locus ceruleus

Changes for: nervous system

Changes for: reticulotegmental nucleus

Changes for: central nervous system

Changes for: postzygapophysis

Changes for: pectoral fin proximal radial bone 2

Changes for: pectoral fin proximal radial bone 3

Changes for: pectoral fin proximal radial bone 4

Changes for: pectoral fin proximal radial bone 1

Changes for: pectoral fin distal radial bone 1

Changes for: pectoral fin distal radial bone 2

Changes for: pectoral fin distal radial bone 3

Changes for: fourth ventricle

Changes for: meninx

Changes for: dura mater

Changes for: retinal neural layer

Changes for: hindbrain commissure

Changes for: myelencephalon sulcus limitans

Changes for: metencephalon sulcus limitans

Changes for: rhombencephalon neural crest

Changes for: basibranchial 5 bone

Changes for: paired fin radial bone

Changes for: mesopterygium cartilage

Changes for: pelvic fin distal radial bone

Changes for: mesocoracoid bone

Changes for: future brain

Changes for: lateral ethmoid bone

Changes for: rib pre-cartilage condensation

Changes for: rib cartilage element

Changes for: future cardiac ventricle

Changes for: radial bone

Changes for: metanephric renal vesicle

Changes for: anal fin proximal radial bone

Changes for: metanephric nephron

Changes for: posterior nuchal plate

Changes for: intracranial diverticulum of swimbladder

Changes for: middle nuchal plate

Changes for: dorsal fin proximal radial bone 1

Changes for: dorsal fin proximal radial bone 2

Changes for: presumptive neural plate

Changes for: presumptive hindbrain

Changes for: presumptive endocardium

Changes for: presumptive midbrain hindbrain boundary

Changes for: superior olivary nucleus

Changes for: rectal diverticulum

Changes for: basibranchial 2 cartilage

Changes for: basibranchial 3 cartilage

Changes for: cerebellum emboliform nucleus

Changes for: basibranchial 1 cartilage

Changes for: basibranchial 4 cartilage

Changes for: basibranchial 5 cartilage

Changes for: pectoral fin radial bone

Changes for: pectoral fin proximal radial bone

Changes for: pectoral fin distal radial bone

Changes for: propterygium cartilage

Changes for: mesocoracoid cartilage

Changes for: basipterygium cartilage

Changes for: salivatory nucleus

Changes for: renal vesicle

Changes for: atrioventricular canal

Changes for: cardiac ventricle

Changes for: cardiac atrium

Changes for: anal fin middle radial bone

Changes for: dorsal fin middle radial bone

Changes for: sexually immature organism

Changes for: pelvic fin radial bone

Changes for: future trigeminal ganglion

Changes for: paired fin radial cartilage

Changes for: sinus venosus

Changes for: pontine raphe nucleus

Changes for: hindbrain

Changes for: anal fin radial bone

Changes for: dorsal fin radial bone

Changes for: fourth ventricle choroid plexus epithelium

Changes for: sexually immature stage

Changes for: facial nucleus

Changes for: blood

Changes for: meninx of telencephalon

Changes for: meninx of hindbrain

Changes for: future meninx

Changes for: nucleus of medulla oblongata

Changes for: Barrington’s nucleus

Changes for: parabrachial nucleus

Changes for: pelvic fin distal radial bone 3

Changes for: pelvic fin distal radial bone 2

Changes for: pelvic fin distal radial bone 1

Changes for: presomitic mesoderm

Changes for: chordal neural plate

Changes for: hypochord

Changes for: pre-chordal neural plate

Changes for: midbrain-hindbrain boundary

Changes for: primitive knot

Changes for: floor plate

Changes for: paraxial mesoderm

Changes for: neural plate

Changes for: fourth ventricle ependyma

Changes for: nucleus of cerebellar nuclear complex

Changes for: posterior presumptive neural plate

Changes for: anterior presumptive neural plate

Changes for: nucleus of pontine reticular formation

Changes for: hindbrain neural rod

Changes for: hindbrain neural keel

Changes for: fourth ventricle aperture

Changes for: ganglion

Changes for: hindbrain neural tube

Changes for: basibranchial 1 bone

Changes for: basibranchial 3 bone

Changes for: basibranchial 2 bone

Changes for: basibranchial 4 bone

Changes for: fully formed stage

Changes for: metapterygium cartilage

Changes for: leptomeninx

Changes for: pronephric mesoderm

Changes for: hindbrain venous system

Changes for: pelvic fin distal radial cartilage 2

Changes for: pelvic fin distal radial cartilage 3

Changes for: pelvic fin distal radial cartilage 1

Changes for: lung primordium

Changes for: rostral motor nucleus of abducens

Changes for: foramen cecum of tongue

Changes for: meningeal cluster

Changes for: presumptive mesoderm

Changes for: presumptive ectoderm

Changes for: basipterygium bone

Changes for: caudal motor nucleus of abducens

Changes for: anal fin distal radial bone

Changes for: manual digit phalanx cartilage element

Changes for: pedal digit metatarsal pre-cartilage condensation

Changes for: pedal digit 2 phalanx cartilage element

Changes for: pedal digit 1 phalanx cartilage element

Changes for: pedal digit 4 phalanx cartilage element

Changes for: pedal digit 3 phalanx cartilage element

Changes for: pedal digit phalanx cartilage element

Changes for: pedal digit 5 phalanx cartilage element

Changes for: manual digit 3 phalanx cartilage element

Changes for: manual digit 4 phalanx cartilage element

Changes for: manual digit 1 phalanx cartilage element

Changes for: manual digit 2 phalanx cartilage element

Changes for: manual digit 5 phalanx cartilage element

Changes for: manual digit metacarpus cartilage element

Changes for: manual digit metacarpus pre-cartilage condensation

Changes for: pedal digit metatarsal cartilage element

Changes for: presumptive hypochord

Changes for: presumptive endoderm

Changes for: pectoral fin distal radial cartilage 3

Changes for: pectoral fin distal radial cartilage 1

Changes for: pectoral fin distal radial cartilage 2

Changes for: circumventricular organ

Changes for: mesonephric renal vesicle

Changes for: myelencephalon

Changes for: tela choroidea of fourth ventricle

Changes for: testis sex cord

Changes for: brain

Changes for: dorsal fin proximal radial bone

Changes for: mesoderm

Changes for: endoderm

Changes for: ectoderm

Changes for: dorsal fin distal radial bone

Changes for: pectoral fin proximal radial cartilage 3

Changes for: pectoral fin proximal radial cartilage 2

Changes for: pectoral fin proximal radial cartilage 1

Changes for: pectoral fin proximal radial cartilage 4

Changes for: uterus

Report for properties

ObjectProperty objects lost from source: 1

ObjectProperty objects new in target: 3

New ObjectProperty : child nucleus of in male

New ObjectProperty : child nucleus of in hermaphrodite

New ObjectProperty : child nucleus of

Changed ObjectProperty objects: 1

Changes for: composed_primarily_of

April 30, 2014 |

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