releases/2014-04-23/uberon

Mostly fixes to definitions, synonyms and labels. Added new terms to represent the baleen feeding system in whales, including the lunge feeding organ
releases/2014-04-23/uberon image
  • Skeletal
    • Using zygapophysis as primary label issue 421
  • Neuro
    • Added more NN xrefs
    • Various NTs
  • Mammalian
    • NT: baleen feeding system (whale)
    • NT: lunge feeding organ
  • Misc
    • High level xref for XAO. 422
    • New Relation: has_component (from RO)
    • Using RO IDs for composed_primarily_of
    • Pharyngea Arch 2 def. Fixes 416 – ZFIN:yb
    • classifying to more specific CARO classes
    • Fixed typo. Fixes 418
    • Removing stray CARO classes from composite builds. Issue 422
    • Improving text defs for parts of renal system

Ontology Diff Report

Original Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-04-10/uberon.owl

New Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-04-23/uberon.owl

Report for classes

Class objects lost from source: 1

Class objects new in target: 27

New Class : paragigantocellular nucleus

New Class : supplemental motor cortex

New Class : parvocellular reticular nucleus

New Class : premotor cortex

New Class : actinopterygian frontal-parietal joint

New Class : isthmus of fallopian tube

New Class : neurovascular bundle

New Class : lateral periolivary nucleus

New Class : subparafascicular nucleus

New Class : baleen feeding system

New Class : Y-shaped fibrocartilage skeleton of ventral pouch

New Class : stem of Y-shaped fibrocartilage skeleton of ventral pouch

New Class : branch of Y-shaped fibrocartilage skeleton of ventral pouch

New Class : lunge feeding organ

New Class : ventral throat pleat

New Class : lunge feeding vibrissa

New Class : lunge feeding organ papilla

New Class : lateral nucleus of trapezoid body

New Class : subparabrachial nucleus

New Class : retroambiguus nucleus

New Class : paratrigeminal nucleus

New Class : renal fascia

New Class : nucleus of phrenic nerve

New Class : lateral paragigantocellular nucleus

New Class : dorsal paragigantocellular nucleus

New Class : paramedian medullary reticular complex

New Class : dorsal paramedian reticular nucleus

Changed Class objects: 390

Changes for: basibranchial cartilage

Changes for: parabrachial pigmental nucleus

Changes for: dartos muscle of labia majora

Changes for: ilio-marsupialis muscle

Changes for: lateral ethmoid cartilage

Changes for: ring of oral cilia

Changes for: hyomandibular cartilage

Changes for: hyomandibular bone

Changes for: plastron-carapace bridge

Changes for: proximal tarsal bone

Changes for: left extraembryonic umbilical artery

Changes for: common crus of semicircular duct

Changes for: surangular bone

Changes for: dorsal head of rib

Changes for: ventral head of rib

Changes for: cartilaginous projection

Changes for: primary remex feather

Changes for: secondary remex feather

Changes for: tertial remex feather

Changes for: atrioventricular region

Changes for: radial cartilage

Changes for: supraoccipital cartilage element

Changes for: papillary layer of dermis

Changes for: paratenial nucleus

Changes for: pedal digitopodium bone

Changes for: manual digitopodium bone

Changes for: autopod bone

Changes for: row of scales

Changes for: sphenoid bone

Changes for: malleus bone

Changes for: incus bone

Changes for: palatine bone

Changes for: stapes bone

Changes for: exoccipital bone

Changes for: basioccipital bone

Changes for: cuneiform nucleus

Changes for: hyoglossus muscle

Changes for: glandular system

Changes for: respiratory muscle

Changes for: proximal mesopodial bone

Changes for: femur cartilage element

Changes for: skeleton of digitopodium

Changes for: skeleton of manual digitopodium

Changes for: skeleton of pedal digitopodium

Changes for: ventral patch of Leydig’s organ

Changes for: extra-ocular muscle

Changes for: cortical arch of kidney

Changes for: open anatomical space

Changes for: stapes cartilage element

Changes for: dorsal patch of Leydig’s organ

Changes for: malleus cartilage element

Changes for: muscle organ

Changes for: paraaortic lymph node

Changes for: baleen plate

Changes for: zygomatic process of frontal bone

Changes for: sesamoid bone of the peroneus longus muscle

Changes for: nutrient foramen conduit

Changes for: lumen of nutrient foramen

Changes for: vinculum tendon of wing

Changes for: frontal process of zygomatic bone

Changes for: pedal digitopodium region

Changes for: manual digitopodium region

Changes for: digitopodium region

Changes for: centrale

Changes for: lesser sciatic notch

Changes for: ischiopubic ramus

Changes for: otolithic part of statoconial membrane

Changes for: periosteum

Changes for: calcaneus

Changes for: distal tarsal bone 1

Changes for: distal tarsal bone 3

Changes for: distal tarsal bone 2

Changes for: rib skeletal system

Changes for: skeleton of pes

Changes for: skeleton of manus

Changes for: metatarsal bone

Changes for: fibula

Changes for: distal carpal bone 3

Changes for: distal carpal bone 2

Changes for: distal carpal bone 4

Changes for: distal carpal bone 1

Changes for: radius bone

Changes for: ulna

Changes for: proximal carpal bone

Changes for: distal carpal bone

Changes for: cell cluster organ

Changes for: multicellular anatomical structure

Changes for: deltoid

Changes for: bone element

Changes for: sesamoid bone

Changes for: limb muscle

Changes for: masticatory muscle

Changes for: fibrous capsule of liver

Changes for: basibranchial bone

Changes for: supraoccipital bone

Changes for: pectoral appendage

Changes for: paired limb/fin

Changes for: pelvic appendage

Changes for: dorsal motor nucleus of vagus nerve

Changes for: extensor digitorum longus

Changes for: outer fibrous layer of periosteum

Changes for: endosteum

Changes for: centrale cartilage

Changes for: proximal carpal cartilage

Changes for: proximal carpal bone pre-cartilage condensation

Changes for: autopod cartilage

Changes for: distal carpal cartilage

Changes for: distal carpal bone 5 pre-cartilage condensation

Changes for: distal carpal bone 5 cartilage

Changes for: distal carpal bone 4 pre-cartilage condensation

Changes for: distal carpal bone 4 cartilage

Changes for: distal carpal bone 3 pre-cartilage condensation

Changes for: distal carpal bone 1 pre-cartilage condensation

Changes for: distal carpal bone 1 cartilage

Changes for: distal carpal bone 2 cartilage

Changes for: proximal tarsal cartilage

Changes for: proximal tarsal bone pre-cartilage condensation

Changes for: distal carpal bone 2 pre-cartilage condensation

Changes for: distal carpal bone 3 cartilage

Changes for: periolivary nucleus

Changes for: medial superior olivary nucleus

Changes for: capillary bed

Changes for: bulb of vestibule

Changes for: distal convoluted tubule

Changes for: renal column

Changes for: cocoon

Changes for: pubis

Changes for: ischium

Changes for: ilium

Changes for: air sac

Changes for: faveolus

Changes for: renal papilla

Changes for: minor calyx

Changes for: major calyx

Changes for: renal pelvis

Changes for: distal tarsal bone 3 cartilage

Changes for: distal tarsal bone 2 pre-cartilage condensation

Changes for: distal tarsal bone 2 cartilage

Changes for: distal tarsal bone 1 pre-cartilage condensation

Changes for: distal tarsal bone 1 cartilage

Changes for: distal tarsal bone pre-cartilage condensation

Changes for: distal tarsal cartilage

Changes for: ventrobronchus

Changes for: mesobronchus

Changes for: distal tarsal bone 5 pre-cartilage condensation

Changes for: distal tarsal bone 5 cartilage

Changes for: distal tarsal bone 4 cartilage

Changes for: distal tarsal bone 4 pre-cartilage condensation

Changes for: distal tarsal bone 3 pre-cartilage condensation

Changes for: uterine spiral artery

Changes for: multi-unit eye

Changes for: dorsal hair

Changes for: air capillary of parabronchus

Changes for: lateroobronchus

Changes for: humeral diverticulum of clavicular air sac

Changes for: sphenoid cartilage element

Changes for: sphenoid bone pre-cartilage condensation

Changes for: basioccipital pre-cartilage condensation

Changes for: diaphragm

Changes for: true rib

Changes for: head of rib

Changes for: entire embryonic mesenchyme

Changes for: uterine horn

Changes for: ovarian vein

Changes for: testicular vein

Changes for: compound cell cluster organ

Changes for: spinal trigeminal tract

Changes for: rib

Changes for: cartilaginous vertebral centrum

Changes for: kidney

Changes for: nail plate

Changes for: tarsometatarsus

Changes for: hindlimb

Changes for: forelimb

Changes for: tibiotarsus

Changes for: blood vessel layer of choroid

Changes for: postzygapophysis

Changes for: spinal cord lateral motor column

Changes for: spleen central arteriole

Changes for: anatomical entity

Changes for: vertebral arch joint

Changes for: skeletal muscle organ

Changes for: prezygapophysis

Changes for: bony vertebral centrum

Changes for: radial sesamoid

Changes for: proximal segment of rib

Changes for: capsule of lymph node

Changes for: orbitosphenoid

Changes for: otic capsule pre-cartilage condensation

Changes for: endoskeleton

Changes for: otic capsule cartilage element

Changes for: vertebra

Changes for: primary visual cortex

Changes for: patella

Changes for: placenta junctional zone

Changes for: sympathetic afferent fiber

Changes for: spinal cord motor column

Changes for: avian uterine tube isthmus

Changes for: row of feathers

Changes for: brain ventricle/choroid plexus

Changes for: somatic motor system

Changes for: placenta labyrinth

Changes for: metacarpal bone

Changes for: cricoid cartilage

Changes for: long bone epiphyseal ossification zone

Changes for: posterior stroma of cornea

Changes for: anterior stroma of cornea

Changes for: purkinje fiber

Changes for: sensory dissociation area

Changes for: laryngeal apparatus

Changes for: lateral vaginal canal

Changes for: median vaginal canal

Changes for: adrenal gland

  • Deleted
    • - adrenal gland comment Taxon notes: The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997). We follow Kardong and state homology at the level of the cortex and medulla rather than gland as a whole
  • Added
    • + adrenal gland comment Taxon notes: The origin of the adrenal gland is still controversial. It is thought to share the same origin as the kidney and gonads, derived from coelomic epithelium of the urogenital ridge and/or the underlying mesenchyme (Keegan and Hammer, 2002; Morohashi, 1997). We follow Kardong and state homology at the level of the cortex and medulla rather than gland as a whole. Function notes: suprarenal cortex manufactures corticosteroids; suprarenal medulla manufactures epinephrine and norepinephrine; suprarenal medulla receives preganglionic sympathetic innervation from the greater thoracic splanchnic n.

Changes for: horizontal septum

Changes for: talus

Changes for: Brodmann (1909) area 43

Changes for: dorsal hypothalamic nucleus

Changes for: exocrine system

Changes for: white matter

Changes for: interlobular duct

Changes for: sesamoid cartilage

Changes for: tooth cingulum

Changes for: thymus epithelium

Changes for: prezygapophysis of cervical vertebra

Changes for: prezygapophysis of sacral vertebra

Changes for: prezygapophysis of lumbar vertebra

Changes for: postzygapophysis of thoracic vertebra

Changes for: prezygapophysis of thoracic vertebra

Changes for: postzygapophysis of cervical vertebra

Changes for: postzygapophysis of lumbar vertebra

Changes for: basibranchial 5 bone

Changes for: paired fin radial bone

Changes for: incus cartilage element

Changes for: basioccipital cartilage element

Changes for: exoccipital pre-cartilage condensation

Changes for: iliac pre-cartilage condensation

Changes for: incus pre-cartilage condensation

Changes for: humerus cartilage element

Changes for: humerus pre-cartilage condensation

Changes for: mesocoracoid bone

Changes for: femur pre-cartilage condensation

Changes for: lateral ethmoid bone

Changes for: malleus pre-cartilage condensation

Changes for: ischial cartilage element

Changes for: ischial pre-cartilage condensation

Changes for: rib pre-cartilage condensation

Changes for: radius cartilage element

Changes for: pubic pre-cartilage condensation

Changes for: rib cartilage element

Changes for: radius-ulna pre-cartilage condensation

Changes for: scapula cartilage element

Changes for: scapula pre-cartilage condensation

Changes for: radial bone

Changes for: stapes pre-cartilage condensation

Changes for: multi cell component structure

Changes for: posterior nuchal plate

Changes for: middle nuchal plate

Changes for: upper esophageal sphincter

Changes for: nuclear complex of neuraxis

Changes for: tibial plateaux

Changes for: basal cistern

Changes for: semicircular canal ampulla

Changes for: cutaneous microfibril

Changes for: rectal diverticulum

Changes for: renal sinus

Changes for: genital labium

Changes for: midface

Changes for: nasolabial region

Changes for: hairline

Changes for: Douglas’ pouch

Changes for: visceral musculature

Changes for: pectoral fin radial bone

Changes for: mesocoracoid cartilage

Changes for: proximal convoluted tubule segment 1

Changes for: proximal convoluted tubule segment 2

Changes for: branchiomeric muscle

Changes for: long descending thin limb bend

Changes for: kidney pyramid

Changes for: kidney outer medulla outer stripe

Changes for: kidney outer medulla inner stripe

Changes for: prebend segment of loop of Henle

Changes for: pelvic fin radial bone

Changes for: ulna cartilage element

Changes for: remnant of Rathke’s pouch

Changes for: perihilar interstitium

Changes for: vasculature

Changes for: dorsal fin radial bone

Changes for: proximal phalanx

Changes for: optic eminence

Changes for: lung connective tissue

Changes for: olivary body

Changes for: neural nucleus

Changes for: inner cambium layer of periosteum

Changes for: hilum of kidney

Changes for: venous system

Changes for: bony projection

Changes for: blood vasculature

Changes for: posterior transverse temporal area 42

Changes for: anterior transverse temporal area 41

Changes for: zygapophysis

Changes for: pre-Botzinger complex

Changes for: metoptic pilar

Changes for: hair follicle isthmus

Changes for: hair follicle matrix region

Changes for: pharyngeal arch 2

Changes for: interdigital region

Changes for: ultimobranchial body

Changes for: otic capsule

Changes for: compound organ

Changes for: arthropod sternum

Changes for: lamina propria

Changes for: Leydig’s organ

Changes for: compound eye

Changes for: nose skin

Changes for: axilla skin

Changes for: scrotum skin

Changes for: submucosa

Changes for: basibranchial 1 bone

Changes for: basibranchial 3 bone

Changes for: basibranchial 2 bone

Changes for: basibranchial 4 bone

Changes for: parabronchus

Changes for: somatosensory cortex

Changes for: membrane organ

Changes for: organ part

Changes for: organ

Changes for: Bachmann’s bundle

Changes for: hair follicle bulge

Changes for: axial skeleton plus cranial skeleton

Changes for: inferior nasal concha

Changes for: manus bone

Changes for: meniscus

Changes for: left testicular vein

Changes for: right testicular vein

Changes for: adventitia

Changes for: optic eminence mesenchyme

Changes for: multi-cellular organism

Changes for: cartilage element

Changes for: orbitosphenoid cartilage element

Changes for: crus commune

Changes for: secondary palatal shelf

Changes for: distal tarsal bone

Changes for: sphenoid lesser wing pre-cartilage condensation

Changes for: iliac cartilage element

Changes for: pubic cartilage element

Changes for: exoccipital cartilage element

Changes for: sacral vertebra cartilage element

Changes for: sacral vertebra pre-cartilage condensation

Changes for: distal carpal bone 5

Changes for: distal tarsal bone 5

Changes for: distal tarsal bone 4

Changes for: alisphenoid cartilage element

Changes for: alisphenoid pre-cartilage condensation

Changes for: muscle layer

Changes for: basipterygium bone

Changes for: pedal digit metatarsal pre-cartilage condensation

Changes for: manual digit metacarpus cartilage element

Changes for: manual digit metacarpus pre-cartilage condensation

Changes for: pedal digit metatarsal cartilage element

Changes for: hyoid muscle

Changes for: vestigial embryonic structure

Changes for: kidney calyx

Changes for: spleen perifollicular zone

Changes for: tarsometatarsus cartilage element

Changes for: tibiotarsus cartilage element

Changes for: scapula

Changes for: abductor muscle

Changes for: proximal head of humerus

Changes for: capillary layer of choroid

Changes for: mammary duct terminal end bud

Changes for: nephrostome

Changes for: uropropatagium

Changes for: plagiopatagium

Changes for: dactylopatagium major

Changes for: dactylopatagium medius

Changes for: dactylopatagium minus

Changes for: dactylopatagium brevis

Changes for: inter limb-segment region

Changes for: fibula cartilage element

Changes for: radius-ulna cartilage element

Changes for: tibia cartilage element

Changes for: calcaneum cartilage element

Changes for: endocrine system

Changes for: calcaneum pre-cartilage condensation

Changes for: alisphenoid bone

Changes for: radio-ulna

Changes for: femur

Changes for: tibia

Changes for: humerus

Changes for: sternum

Report for properties

ObjectProperty objects lost from source: 1

ObjectProperty objects new in target: 4

New ObjectProperty : connected to

New ObjectProperty : has component

New ObjectProperty : has boundary

New ObjectProperty : composed_primarily_of

Changed ObjectProperty objects: 8

Changes for: anteriorly connected to

Changes for: distally connected to

Changes for: proximally connected to

Changes for: drains

Changes for: supplies

Changes for: output of

Changes for: null

Changes for: posteriorly connected to

April 23, 2014 |

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logo Uberon is an integrated cross-species ontology covering anatomical structures in animals. See the about page for more info.

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