2016-04-19 release

Primarily maintenance release, with new terms for brain neuroanatomy, and a separatation of homology axioms out of uberon into Bgee
2016-04-19 release image

Ontology Diff Report

  • skeletal
    • NTRs for maxillary sutures. Fixes #2139
    • NTR: subchondral bone fixes #1195
    • Fixed typo in def of coracoid scapula. Fixes #1199
    • Implementing consistent naming for numbered teeth
    • renamed vestibule. Fixes https://github.com/obophenotype/upheno/issues/126
  • neuro
    • NTs for Allen MBA regions used in cell type taxonomy
    • adding non-informative tag to brain layer grouping classes
  • meta
    • prefixed obsolete labels
    • removing homology axioms, Fixes #1206
  • other
    • fixed logical definitions and xrefs for left and right kidney interstitium. Fixes #1207
    • NTs for temporal boundaries, including death. Fixes #1172
    • fixed logical def of tracheal gland
    • removed disjointness axiom from meyers loop
    • Fixes for tracheal gland, fixes #1197
    • NT: Kimura membrane. Fixes #1200

Original Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2016-01-26/uberon.owl

New Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2016-04-19/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 62

New Class : zygomaticomaxillary suture

New Class : ethmoidomaxillary suture

New Class : sphenomaxillary suture

New Class : lacrimomaxillary suture

New Class : maxillary-premaxillary suture

New Class : dorsal auditory area

New Class : posterior parietal association areas

New Class : postrhinal area

New Class : primary visual area, layer 6a

New Class : anteromedial visual area

New Class : anterolateral visual area

New Class : lateral visual area

New Class : posterolateral visual area

New Class : primary somatosensory area barrel field layer 5

New Class : primary somatosensory area barrel field layer 1

New Class : primary somatosensory area barrel field layer 2/3

New Class : primary somatosensory area barrel field layer 6b

New Class : primary somatosensory area barrel field layer 6a

New Class : primary somatosensory area barrel field layer 4

New Class : subchondral region of epiphysis

New Class : frontomaxillary suture

New Class : infraorbital margin

New Class : orbital margin

New Class : infraorbital bridge

New Class : rostrolateral area, layer 5

New Class : intraculminate fissure of cerebellum

New Class : radiation of corpus callosum

New Class : central sulcus of insula

New Class : preculminate fissure of cerebellum

New Class : sulcus of parietal lobe

New Class : dorsolateral part of supraoptic nucleus

New Class : retro-olivary nucleus

New Class : sagittal stratum

New Class : anterior segment of paracentral lobule

New Class : paracentral lobule

New Class : posterior segment of paracentral lobule

New Class : Meyer’s loop of optic radiation

New Class : arcuate fasciculus

New Class : amiculum of inferior olive

New Class : amiculum

New Class : posteromedial visual area

New Class : primary visual area, layer 4

New Class : primary visual area, layer 5

New Class : primary visual area, layer 2/3

New Class : anterolateral visual area, layer 5

New Class : posteromedial visual area, layer 6a

New Class : postrhinal area, layer 4

New Class : rostrolateral visual area

New Class : anteromedial visual area, layer 5

New Class : posteromedial visual area, layer 4

New Class : lateral visual area, layer 4

New Class : lateral visual area, layer 5

New Class : dorsal auditory area, layer 4

New Class : lateral visual area, layer 6a

New Class : posterolateral visual area, layer 4

New Class : central medullary reticular nuclear complex

New Class : Kimura membrane

New Class : space between upper and lower jaws

New Class : life cycle temporal boundary

New Class : life-death temporal boundary

New Class : start of life cycle

New Class : predorsal scale

Changed Class objects: 115

Changes for: sulcus of brain

Changes for: interparietal bone

Changes for: articular/anguloarticular

Changes for: obsolete mammary gland sebaceous gland

Changes for: intralingual sulcus

Changes for: vein

Changes for: obsolete neurofilament

Changes for: intraparietal sulcus

Changes for: inferior postcentral sulcus

Changes for: postcentral sulcus of parietal lobe

Changes for: marginal sulcus

Changes for: diastema

Changes for: retromolar space

Changes for: obsolete zygomasseteric system

Changes for: superior parietal sulcus

Changes for: angular sulcus

Changes for: transverse parietal sulcus

Changes for: inferior parietal sulcus

Changes for: dorsal ventricular ridge of pallium

Changes for: lung connective tissue

Changes for: entopallium

Changes for: occipital bun

Changes for: epidermal ridge of digit

Changes for: brachiocephalic artery

Changes for: externally connecting tube lumen

Changes for: cerebellum fissure

Changes for: soleus muscle

Changes for: flexor hallucis longus

Changes for: obsolete regional part of thalamus

Changes for: corticospinal tract

Changes for: amiculum of dentate nucleus

Changes for: obsolete tonsillar lymph node

Changes for: obsolete genital lymph node

Changes for: tympanic plate

Changes for: obsolete gravid stage

Changes for: chromaffin system

Changes for: Duvernoy’s gland

Changes for: lamprey sucker

Changes for: interincisive suture

Changes for: submucosal gland

Changes for: prostatic utricle

Changes for: stapes bone

Changes for: obsolete decidual cell

Changes for: layer of CA1 field

Changes for: layer of CA2 field

Changes for: layer of CA3 field

Changes for: styliform cartilage

Changes for: obsolete coffin joint

Changes for: nucleus lentiformis mesencephali (Aves)

Changes for: cranial nerve II

Changes for: cardial valve

Changes for: brain

Changes for: ceratohyal bone

Changes for: basihyal bone

Changes for: gracilis

Changes for: obsolete developing esophageal region

Changes for: supraorbital ridge

Changes for: spiral colon

Changes for: plica semilunaris of conjunctiva

Changes for: arcopallium

Changes for: coxal gland

Changes for: obsolete segment of white matter of spinal cord

Changes for: ascidian neural gland

Changes for: Hatschek’s pit

Changes for: digit 1 or 5

Changes for: digit 2, 3 or 4

Changes for: neurohypophyseal duct

Changes for: secondary auditory cortex

Changes for: plantaris

Changes for: mesenchyme dorsal fin

Changes for: supraorbital bone

Changes for: auditory bulla

Changes for: obsolete rhinencephalon

Changes for: obsolete incisive process of premaxilla

Changes for: deciduous premolar 5

Changes for: molar tooth 3

Changes for: molar tooth 1

Changes for: prostomium

Changes for: obsolete ventral labial vein

Changes for: obsolete pre-hepatic part

Changes for: obsolete lingual cusp of tooth

Changes for: right renal medulla interstitium

Changes for: left kidney interstitium

Changes for: left renal medulla interstitium

Changes for: right renal cortex interstitium

Changes for: right kidney interstitium

Changes for: left renal cortex interstitium

Changes for: dorsal fin actinotrichium

Changes for: interrenal gland

Changes for: swim bladder

Changes for: obsolete peripheral part of autonomous nervous system

Changes for: obsolete leg joint

Changes for: coracoid process of scapula

Changes for: premolar tooth 4

Changes for: premolar tooth 5

Changes for: deciduous molar tooth 1

Changes for: molar tooth 2

Changes for: podocyte slit junction

Changes for: podocyte slit diaphragm

Changes for: trachea gland

Changes for: obsolete skeletal muscle of mesenchyme

Changes for: dorsal aorta

Changes for: obsolete jointed/prehensile appendage

Changes for: obsolete locomotive weight-bearing appendage

Changes for: obsolete rexed lamina xi

Changes for: obsolete rexed lamina xii

Changes for: obsolete neocortical column

Changes for: obsolete splenius musculature

Changes for: obsolete iliocostalis musculature

Changes for: obsolete adventitia of uterus

Changes for: obsolete intermediate filament

Changes for: obsolete microfilament

Changes for: obsolete lobe parts of cerebral cortex

Changes for: obsolete regional part of cerebellar white matter

Changes for: ventral aorta

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 1

Changes for: obsolete provenance_notes

April 19, 2016 |

Comments Section

Feel free to comment on the post but keep it clean and on topic.

comments powered by Disqus

logo Uberon is an integrated cross-species ontology covering anatomical structures in animals. See the about page for more info.

github.com/obophenotype/uberon
 

Google+