Improvements to representations of serous membranes and associated structures

Ontology Diff Report

• Overhaul of body cavities and linings
  • Obsoleting dubious concept of cavity-lining in favor of serous membrane.
  • Obsoleting dubious concept of body-cavity-or-lining in favor of serous sac.
  • Using luminal_space_of pattern for cavities
  • Refactoring cavities and linings to conform to a standard design pattern, and clearing up many confusions. Fixes 86
  • fixed pericardial fat syn clash; diaphragm, muscle and future brain fixes
  • peritoneum xrefs for mouse, issue 86.
  • obsoleting: body membrane (NIFSTD)
  • NT: serous cavity
  • NT: visceral fat
  • NT: pericardial fat
  • Fixing unsatisfiable classes due to peritoneum vs peritoneal sac issues. Related to 86
  • Pericardium re-classified as multi-tissue. Fixes 1186
  • Ventral body cavity: now JEPD pattern for thoracic/abdominopelvic
  • Coelem fixes
  • Improved pleural cavities
• neuro
  • added Area X and robust nucleus (songbirds). Fixes 12142
  • BA9 part of DLPFC. Fixes 1163
  • BA24 part of ACC. Fixes 1161
  • Removing inconsistent axioms for EW nucleus. 1160 and 1159
  • VT nucleus not part of VT area. See 1159
  • Additional work on hippocampus layers
  • made S1 part_of parietal cortex (more specific than lobe). Issue 1147
• musculoskeletal
  • 1165 updated label on circulus and removed period from label on humeral facet on the ulna
  • added sharpey’s fiber, procurrent spur, pectoral splint
  • added gill membrane, pelvic intercleithral cartilage, nasal accessory organ
  • classifying multiple muscle organs as skeletal. 1154
  • merging hamstring and posterior compartment thihg muscle. Adding classification to skeletal muscle 1154
  • made rib skeletal system part of postcranial skeletal system, Fixes 1167
  • Bone of reproductive structure –> Bone of reproductive organ. Fixes 1158
  • added explicit skeletal muscle classification. 1154
  • made all quadriceps femoris (including vastus lateralis) skeletal, Fixes 1152
  • classifying transversus
• reasoning
  • Various resolutions to incoherencies revealed by reflexive part-of
  • Added taxon notes and taxon axioms for sallet and TM
  • urinary bladder never in Aves. Fixes 454
• dev
  • Some refactoring of early mouth: split into ectodermal and non-ectodermal components
  • thymoids are in branchial basket region, but not part of. See 1159
• misc
  • NT: caval sphincter (Phocidae)
  • vanes are connected to rachis, not part of. See 1159
  • Adding stroma syn to mammary connective tissue. Fixes 1151
  • merging adrenal into suprarenal. https://github.com/obophenotype/mouse-anatomy-ontology/issues/110
  • Adding syns for outer limiting membrane pending https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2109#issuecomment-141523542
  • Fixing incorrect syn from FMA. 1176
  • NT: lower esophagus mucosa layer. Fixes 1177
  • NT: lower esophagus muscularis layer. Fixes 1176
  • tweak def of ab ex obl
  • NTs: L/R adrenal cortex/medulla. Fixes 1170
  • NT: Hensen stripe. https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2122
  • Modified relationships for sallet
  • NT: muscle layer of sigmoid colon. Fixes 1162
  • gastroepiploic arteries
  • NTs for apical zones of ventricles. Fixes 1169
• xrefs and metadata
  • xref fixes from CatherineLeroy. Fixes 1150
  • Adding missing NCIt xrefs. Switch to using meaning-free numeric NCIT IDs. Confirmed with Gilberto that this is correct. Fixes 1149
  • latest EMAPA xrefs
  • IAO xref fixed for example
  • Corrected wrongly encoded accented characters. Addresses 1173

Original Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2015-09-27/uberon.owl

New Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2015-11-19/uberon.owl

Report for classes

Class objects lost from source: 1

• muscle of posterior compartment of thigh

Class objects new in target: 30

New Class : procurrent spur

• procurrent spur label procurrent spur
• procurrent spur created by WD
• procurrent spur SubClassOf part of some caudal fin ventral procurrent ray
• procurrent spur SubClassOf bony projection
• procurrent spur SubClassOf ectoderm-derived structure
• procurrent spur definition A ventrally projecting spur on the posteriormost ventral procurrent caudal ray overlapping ventrally the preceding ray in various percomorphs (Johnson, 1975).
• procurrent spur SubClassOf structure with developmental contribution from neural crest
• procurrent spur SubClassOf mesoderm-derived structure

New Class : pectoral splint

• pectoral splint definition Unpaired bone that covers the base of the first pectoral ray. [Filleul and Lavoué 2001] { database cross reference=PMID:11386087 }
• pectoral splint SubClassOf bone of pectoral complex
• pectoral splint created by WD
• pectoral splint SubClassOf fin bone
• pectoral splint label pectoral splint
• pectoral splint SubClassOf part of some pectoral fin skeleton
• pectoral splint SubClassOf bone of free limb or fin

New Class : accessory nasal sac

• accessory nasal sac definition Accessory nasal sacs are found in a variety of teleosts (Webb, 1993) and likely assist in ventilating the olfactory epithelium by transmitting pressure fluctuations associated with gill irrigation from theoral cavity to the nasal (or sensory) sac (Jakubowski,1975; Webb, 1993; Belanger et al., 2003). [def from Eastman, J. T. and Lannoo, M. J. (2004)] { database cross reference=DOI:10.1002/jmor.10221 }
• accessory nasal sac created by WD
• accessory nasal sac label accessory nasal sac
• accessory nasal sac SubClassOf organ

New Class : Sharpey’s fiber

• Sharpey’s fiber label Sharpey’s fiber
• Sharpey’s fiber SubClassOf connective tissue
• Sharpey’s fiber created by WD
• Sharpey’s fiber definition Sharpey’s fibres (bone fibres, or perforating fibres) are a matrix of connective tissue consisting of bundles of strong collagenous fibres connecting periosteum to bone. They are part of the outer fibrous layer of periosteum, entering into the outer circumferential and interstitial lamellae of bone tissue. { database cross reference=https://en.wikipedia.org/wiki/Sharpey%27s_fibres }

New Class : gill membrane

• gill membrane created by WD
• gill membrane definition Membrane organ that is usually supported by branchiostegal rays and forms the ventral and posterior wall of the gill cavity. [PHENOSCAPE:WD]
• gill membrane SubClassOf membrane organ
• gill membrane has related synonym branchiostegal membrane
• gill membrane label gill membrane

New Class : pelvic intercleithral cartilage

• pelvic intercleithral cartilage SubClassOf part of some pelvic girdle skeleton
• pelvic intercleithral cartilage SubClassOf pelvic region element
• pelvic intercleithral cartilage SubClassOf mesoderm-derived structure
• pelvic intercleithral cartilage definition Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983). { database cross reference=http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf }
• pelvic intercleithral cartilage label pelvic intercleithral cartilage
• pelvic intercleithral cartilage SubClassOf cartilage element
• pelvic intercleithral cartilage created by WD

New Class : muscle layer of sigmoid colon

• muscle layer of sigmoid colon id UBERON:0035805
• muscle layer of sigmoid colon has exact synonym muscularis externa of sigmoid colon { database cross reference=FMA:15028 }
• muscle layer of sigmoid colon has exact synonym muscularis propria of sigmoid colon
• muscle layer of sigmoid colon has exact synonym sigmoid colon muscularis propria
• muscle layer of sigmoid colon SubClassOf muscle layer of colon
• muscle layer of sigmoid colon has related synonym tunica muscularis colon sigmoideum
• muscle layer of sigmoid colon has related synonym sigmoideum muscularis
• muscle layer of sigmoid colon has obo namespace uberon
• muscle layer of sigmoid colon SubClassOf part of some sigmoid colon
• muscle layer of sigmoid colon definition A muscle layer that is part of the sigmoid colon { database cross reference=https://github.com/obophenotype/uberon/issues/1162 }
• muscle layer of sigmoid colon label muscle layer of sigmoid colon
• muscle layer of sigmoid colon EquivalentTo muscular coat and part of some sigmoid colon
• muscle layer of sigmoid colon database cross reference FMA:15028

New Class : Hensen stripe

• Hensen stripe SubClassOf adjacent to some tectorial membrane of cochlea
• Hensen stripe structure notes Hensen’s stripe is continuous with a more external homogeneous basal layer, from which a marginal band of an amorphous substance originates; the marginal net extends from the marginal band and attaches the lateral border of the TM to Hensen’s cells of the organ of Corti. Hensen’s stripe and the homogeneous basal layers display interruptions through which the fibrillar structure of the TM is visible
• Hensen stripe id UBERON:0035806
• Hensen stripe has obo namespace uberon
• Hensen stripe definition The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells. { database cross reference=MGI:anna }
• Hensen stripe SubClassOf acellular membrane
• Hensen stripe has exact synonym Hensen’s stripe { database cross reference=MGI:anna }
• Hensen stripe SubClassOf part of some cochlear duct of membranous labyrinth
• Hensen stripe SubClassOf ectoderm-derived structure
• Hensen stripe label Hensen stripe
• Hensen stripe SubClassOf structure with developmental contribution from neural crest

New Class : future mouth

• future mouth has exact synonym primordial mouth
• future mouth SubClassOf part of some presumptive gut
• future mouth SubClassOf embryonic structure
• future mouth has exact synonym primitive mouth { database cross reference=FMA:293105 }
• future mouth SubClassOf subdivision of tube
• future mouth SubClassOf has part some endoderm
• future mouth has obo namespace uberon
• future mouth label future mouth
• future mouth database cross reference FMA:293105
• future mouth SubClassOf has part some stomodeum
• future mouth id UBERON:0035804
• future mouth definition The primordial mouth region of the developing head. { database cross reference=MP:0003119 }

New Class : serous cavity

• serous cavity SubClassOf luminal space of some serous sac
• serous cavity database cross reference http://www.snomedbrowser.com/Codes/Details/304404008
• serous cavity EquivalentTo anatomical cavity and luminal space of some serous sac
• serous cavity SubClassOf anatomical cavity
• serous cavity id UBERON:0035809
• serous cavity label serous cavity
• serous cavity database cross reference FMA:12241
• serous cavity has obo namespace uberon

New Class : area X of basal ganglion

• area X of basal ganglion SubClassOf nucleus of brain
• area X of basal ganglion id UBERON:0035807
• area X of basal ganglion definition A nucleus in the basal ganglion of songbirds. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/18398825 , database cross reference=https://github.com/geneontology/go-ontology/issues/12142 , database cross reference=GOC:mr , database cross reference=PMID15116398 }
• area X of basal ganglion has broad synonym area X
• area X of basal ganglion has obo namespace uberon
• area X of basal ganglion label area X of basal ganglion
• area X of basal ganglion SubClassOf part of some basal ganglion

New Class : robust nucleus of arcopallium

• robust nucleus of arcopallium database cross reference BTO:0003366
• robust nucleus of arcopallium has related synonym telencephalic song nucleus RA { database cross reference=BTO:0003366 }
• robust nucleus of arcopallium SubClassOf part of some arcopallium
• robust nucleus of arcopallium definition A specialized nucleus within the intermediate archistriatum of songbirds, required for and active during the production of learned song. { database cross reference=https://en.wikipedia.org/wiki/Arcopallium , database cross reference=BTO:0003366 }
• robust nucleus of arcopallium has related synonym robust nucleus of the arcopallium { database cross reference=https://en.wikipedia.org/wiki/Arcopallium , database cross reference=BTO:0003366 , has synonym type=A historic synonym, no longer encouraged }
• robust nucleus of arcopallium id UBERON:0035808
• robust nucleus of arcopallium label robust nucleus of arcopallium
• robust nucleus of arcopallium has obo namespace uberon
• robust nucleus of arcopallium SubClassOf telencephalic nucleus
• robust nucleus of arcopallium has related synonym RA { database cross reference=BTO:0003366 }

New Class : pericardial fat

• pericardial fat definition The sum of epicardial and paracardial fat deposits. { database cross reference=http://dx.doi.org/10.5935/abc.20130138 }
• pericardial fat has obo namespace uberon
• pericardial fat SubClassOf visceral fat
• pericardial fat id UBERON:0035814
• pericardial fat database cross reference ZFA:0005765
• pericardial fat SubClassOf surrounds some heart
• pericardial fat database cross reference http://www.snomedbrowser.com/Codes/Details/42267001
• pericardial fat EquivalentTo adipose tissue and surrounds some heart
• pericardial fat label pericardial fat

New Class : paracardial fat

• paracardial fat label paracardial fat
• paracardial fat SubClassOf pericardial fat
• paracardial fat SubClassOf adjacent to some parietal serous pericardium
• paracardial fat SubClassOf surrounds some heart
• paracardial fat has exact synonym intrathoracic fat { database cross reference=http://dx.doi.org/10.5935/abc.20130138 }
• paracardial fat has obo namespace uberon
• paracardial fat EquivalentTo adipose tissue and adjacent to some parietal serous pericardium and surrounds some heart
• paracardial fat definition Fat deposits in the mediastinum outside the parietal pericardium . { database cross reference=http://dx.doi.org/10.5935/abc.20130138 }
• paracardial fat id UBERON:0035815

New Class : visceral fat

• visceral fat has obo namespace uberon
• visceral fat label visceral fat
• visceral fat definition Any fat deposit surrounding a visceral organ. { database cross reference=UBERON:cjm }
• visceral fat EquivalentTo adipose tissue and surrounds some organ
• visceral fat SubClassOf surrounds some organ
• visceral fat SubClassOf adipose tissue
• visceral fat id UBERON:0035818

New Class : abdominopelvic cavity

• abdominopelvic cavity SubClassOf part of some coelemic cavity lumen
• abdominopelvic cavity definition The part of the ventral body cavity that is within the abdominal segment of the trunk, which encompasses the abdomen proper plus pelvic cavity. { database cross reference=UBERON:cjm }
• abdominopelvic cavity SubClassOf anatomical space
• abdominopelvic cavity EquivalentTo anatomical space and part of some coelemic cavity lumen and luminal space of some abdominal segment of trunk
• abdominopelvic cavity database cross reference FMA:12267
• abdominopelvic cavity id UBERON:0035819
• abdominopelvic cavity has obo namespace uberon
• abdominopelvic cavity database cross reference http://en.wikipedia.org/wiki/Abdominopelvic_cavity
• abdominopelvic cavity SubClassOf luminal space of some abdominal segment of trunk
• abdominopelvic cavity label abdominopelvic cavity
• abdominopelvic cavity has exact synonym cavitas abdominis et pelvis { database cross reference=FMA:TA , has synonym type=latin term }

New Class : peritoneal sac

• peritoneal sac has related synonym peritoneal component { database cross reference=EMAPA:16137 }
• peritoneal sac SubClassOf located in some abdominal cavity
• peritoneal sac SubClassOf has part some peritoneum
• peritoneal sac database cross reference FMA:9908
• peritoneal sac has obo namespace uberon
• peritoneal sac id UBERON:0035820
• peritoneal sac SubClassOf serous sac
• peritoneal sac SubClassOf has part some peritoneal cavity
• peritoneal sac database cross reference EMAPA:16137
• peritoneal sac database cross reference MA:0000054
• peritoneal sac label peritoneal sac
• peritoneal sac definition A serous sac that is the aggregate of the peritoneum and the peritoneal cavity, located in the abdominal cavity. { database cross reference=https://github.com/obophenotype/uberon/issues/86 }

New Class : right gastroepiploic artery

• right gastroepiploic artery has related synonym right gastroepiploic artery { database cross reference=http://en.wikipedia.org/wiki/Right_gastro-omental_artery }
• right gastroepiploic artery database cross reference http://www.snomedbrowser.com/Codes/Details/244271002
• right gastroepiploic artery database cross reference http://en.wikipedia.org/wiki/Right_gastro-omental_artery
• right gastroepiploic artery has related synonym right gastroepiploic { database cross reference=http://en.wikipedia.org/wiki/Right_gastro-omental_artery }
• right gastroepiploic artery has obo namespace uberon
• right gastroepiploic artery definition Artery that runs from right to left along the greater curvature of the stomach, between the layers of the greater omentum, anastomosing with the left gastroepiploic branch of the splenic artery. { database cross reference=http://en.wikipedia.org/wiki/Right_gastro-omental_artery }
• right gastroepiploic artery has exact synonym arteria gastroepiploica dextra { database cross reference=http://en.wikipedia.org/wiki/Right_gastro-omental_artery , has synonym type=latin term }
• right gastroepiploic artery has exact synonym arteria gastroomentalis dextra { database cross reference=http://en.wikipedia.org/wiki/Right_gastro-omental_artery , has synonym type=latin term }
• right gastroepiploic artery label right gastroepiploic artery
• right gastroepiploic artery has exact synonym right gastroomental artery { database cross reference=FMA:14781 }
• right gastroepiploic artery id UBERON:0035829
• right gastroepiploic artery SubClassOf systemic artery
• right gastroepiploic artery SubClassOf branching part of some gastroduodenal artery
• right gastroepiploic artery SubClassOf supplies some small intestine
• right gastroepiploic artery SubClassOf gastroepiploic artery
• right gastroepiploic artery database cross reference FMA:14781
• right gastroepiploic artery has exact synonym right gastro-omental artery { database cross reference=FMA:14781 }
• right gastroepiploic artery has exact synonym right gastro-epiploic artery { database cross reference=FMA:14781 }
• right gastroepiploic artery has exact synonym arteria gastro-omentalis dextra { database cross reference=http://en.wikipedia.org/wiki/Right_gastro-omental_artery , has synonym type=latin term }

New Class : left adrenal gland medulla

• left adrenal gland medulla EquivalentTo medulla of organ and part of some left adrenal gland
• left adrenal gland medulla database cross reference FMA:69092
• left adrenal gland medulla has exact synonym medulla of left adrenal gland { database cross reference=FMA:69092 }
• left adrenal gland medulla id UBERON:0035826
• left adrenal gland medulla SubClassOf adrenal medulla
• left adrenal gland medulla has obo namespace uberon
• left adrenal gland medulla SubClassOf part of some left adrenal gland
• left adrenal gland medulla label left adrenal gland medulla
• left adrenal gland medulla has exact synonym left adrenal medulla { database cross reference=FMA:69092 }
• left adrenal gland medulla has exact synonym medulla of left suprarenal gland { database cross reference=FMA:69092 }
• left adrenal gland medulla definition the adrenal gland medulla that is in the left side of the abdomen { database cross reference=https://github.com/obophenotype/uberon/issues/1170 }

New Class : left adrenal gland cortex

• left adrenal gland cortex EquivalentTo cortex and part of some left adrenal gland
• left adrenal gland cortex label left adrenal gland cortex
• left adrenal gland cortex has obo namespace uberon
• left adrenal gland cortex has exact synonym left adrenal cortex { database cross reference=FMA:69089 }
• left adrenal gland cortex has exact synonym cortex of left suprarenal gland { database cross reference=FMA:69089 }
• left adrenal gland cortex id UBERON:0035825
• left adrenal gland cortex definition the thick outer layer of the adrenal gland that is in the left side of the abdomen { database cross reference=https://github.com/obophenotype/uberon/issues/1170 }
• left adrenal gland cortex database cross reference FMA:69089
• left adrenal gland cortex SubClassOf adrenal cortex
• left adrenal gland cortex SubClassOf part of some left adrenal gland
• left adrenal gland cortex has exact synonym cortex of left adrenal gland { database cross reference=FMA:69089 }

New Class : right adrenal gland medulla

• right adrenal gland medulla definition the adrenal gland medulla that is in the right side of the abdomen { database cross reference=https://github.com/obophenotype/uberon/issues/1170 }
• right adrenal gland medulla id UBERON:0035828
• right adrenal gland medulla SubClassOf part of some right adrenal gland
• right adrenal gland medulla has exact synonym medulla of right suprarenal gland { database cross reference=FMA:69091 }
• right adrenal gland medulla has exact synonym right adrenal medulla { database cross reference=FMA:69091 }
• right adrenal gland medulla EquivalentTo medulla of organ and part of some right adrenal gland
• right adrenal gland medulla database cross reference FMA:69091
• right adrenal gland medulla label right adrenal gland medulla
• right adrenal gland medulla has exact synonym medulla of right adrenal gland { database cross reference=FMA:69091 }
• right adrenal gland medulla has obo namespace uberon
• right adrenal gland medulla SubClassOf adrenal medulla

New Class : right adrenal gland cortex

• right adrenal gland cortex has exact synonym cortex of right suprarenal gland { database cross reference=FMA:69088 }
• right adrenal gland cortex has obo namespace uberon
• right adrenal gland cortex SubClassOf part of some right adrenal gland
• right adrenal gland cortex has exact synonym cortex of right adrenal gland { database cross reference=FMA:69088 }
• right adrenal gland cortex SubClassOf adrenal cortex
• right adrenal gland cortex label right adrenal gland cortex
• right adrenal gland cortex database cross reference FMA:69088
• right adrenal gland cortex definition the thick outer layer of the adrenal gland that is in the right side of the abdomen { database cross reference=https://github.com/obophenotype/uberon/issues/1170 }
• right adrenal gland cortex has exact synonym right adrenal cortex { database cross reference=FMA:69088 }
• right adrenal gland cortex id UBERON:0035827
• right adrenal gland cortex EquivalentTo cortex and part of some right adrenal gland

New Class : left gastroepiploic artery

• left gastroepiploic artery has exact synonym arteria gastro-omentalis sinistra { database cross reference=http://en.wikipedia.org/wiki/Left_gastro-omental_artery , has synonym type=latin term }
• left gastroepiploic artery has exact synonym left gastroomental artery { database cross reference=FMA:14796 }
• left gastroepiploic artery has related synonym left gastroepiploic branch { database cross reference=http://en.wikipedia.org/wiki/Left_gastro-omental_artery }
• left gastroepiploic artery has exact synonym arteria gastroepiploica sinistra { database cross reference=http://en.wikipedia.org/wiki/Left_gastro-omental_artery , has synonym type=latin term }
• left gastroepiploic artery id UBERON:0035830
• left gastroepiploic artery SubClassOf branching part of some splenic artery
• left gastroepiploic artery has exact synonym left gastro-epiploic artery { database cross reference=FMA:14796 }
• left gastroepiploic artery has exact synonym arteria gastroomentalis sinistra { database cross reference=http://en.wikipedia.org/wiki/Left_gastro-omental_artery , has synonym type=latin term }
• left gastroepiploic artery label left gastroepiploic artery
• left gastroepiploic artery has obo namespace uberon
• left gastroepiploic artery has exact synonym left gastro-omental artery { database cross reference=FMA:14796 }
• left gastroepiploic artery database cross reference http://www.snomedbrowser.com/Codes/Details/244270001
• left gastroepiploic artery has exact synonym left inferior gastric artery { database cross reference=FMA:14796 }
• left gastroepiploic artery database cross reference FMA:14796
• left gastroepiploic artery SubClassOf gastroepiploic artery
• left gastroepiploic artery definition Artery that runs from left to right along the greater curvature of the stomach, between the layers of the greater omentum, and anastomoses with the right gastroepiploic. { database cross reference=http://en.wikipedia.org/wiki/Left_gastro-omental_artery }
• left gastroepiploic artery has related synonym left gastroepiploic artery { database cross reference=http://en.wikipedia.org/wiki/Left_gastro-omental_artery }
• left gastroepiploic artery database cross reference http://en.wikipedia.org/wiki/Left_gastro-omental_artery
• left gastroepiploic artery SubClassOf systemic artery

New Class : costal diaphragm

• costal diaphragm label costal diaphragm
• costal diaphragm definition The domain of the diaphragm that is a thin domed sheet of muscle composed of a radial array of myofibers extending laterally from the ribs and medially to a central tendon. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23586979 }
• costal diaphragm SubClassOf lateral structure
• costal diaphragm database cross reference http://www.snomedbrowser.com/Codes/Details/368048007
• costal diaphragm has exact synonym costal part of diaphragm { database cross reference=FMA:58277 }
• costal diaphragm id UBERON:0035831
• costal diaphragm SubClassOf part of some diaphragm
• costal diaphragm has exact synonym pars costalis diaphragmatis { database cross reference=FMA:TA , has synonym type=latin term }
• costal diaphragm SubClassOf attaches to some central tendon of diaphragm
• costal diaphragm has obo namespace uberon
• costal diaphragm database cross reference FMA:58277
• costal diaphragm SubClassOf mesoderm-derived structure
• costal diaphragm SubClassOf in lateral side of some diaphragm
• costal diaphragm SubClassOf organ subunit

New Class : apical region of left ventricle

• apical region of left ventricle definition Region around the apex of the cardiac left ventricle located at the bottom of the left ventricle inferior to both the mitral and aortic valve. { database cross reference=https://github.com/obophenotype/uberon/issues/1169 , database cross reference=BGEE:Ann }
• apical region of left ventricle SubClassOf part of some heart left ventricle
• apical region of left ventricle database cross reference http://www.snomedbrowser.com/Codes/Details/264843009
• apical region of left ventricle has exact synonym apical zone of left ventricle { database cross reference=FMA:225374 }
• apical region of left ventricle EquivalentTo apical region of heart ventricle and part of some heart left ventricle
• apical region of left ventricle SubClassOf apical region of heart ventricle
• apical region of left ventricle id UBERON:0035835
• apical region of left ventricle database cross reference FMA:225374
• apical region of left ventricle has obo namespace uberon
• apical region of left ventricle label apical region of left ventricle

New Class : lower esophagus mucosa

• lower esophagus mucosa see also http://purl.obolibrary.org/obo/FMA_63008
• lower esophagus mucosa id UBERON:0035834
• lower esophagus mucosa EquivalentTo mucosa and part of some lower esophagus
• lower esophagus mucosa SubClassOf esophagus mucosa
• lower esophagus mucosa has obo namespace uberon
• lower esophagus mucosa label lower esophagus mucosa
• lower esophagus mucosa SubClassOf part of some lower esophagus

New Class : lower esophagus muscularis layer

• lower esophagus muscularis layer EquivalentTo muscular coat and part of some lower esophagus
• lower esophagus muscularis layer SubClassOf muscle layer of esophagus
• lower esophagus muscularis layer label lower esophagus muscularis layer
• lower esophagus muscularis layer id UBERON:0035833
• lower esophagus muscularis layer SubClassOf part of some lower esophagus
• lower esophagus muscularis layer see also http://purl.obolibrary.org/obo/FMA_63042
• lower esophagus muscularis layer has obo namespace uberon
• lower esophagus muscularis layer has exact synonym muscle coat of lower esophagus

New Class : caval sphincter

• caval sphincter SubClassOf continuous with some crus of diaphragm
• caval sphincter present in taxon http://purl.obolibrary.org/obo/NCBITaxon_9709
• caval sphincter SubClassOf striated muscle sphincter
• caval sphincter has obo namespace uberon
• caval sphincter has exact synonym vena cava sphincter
• caval sphincter definition A striated muscle sphincter that is an extension of the diaphragm and surrounds the vena cava. { database cross reference=doi: 10.1242/jeb.056127 }
• caval sphincter label caval sphincter
• caval sphincter function notes upon stimulation of right phrenic nerve, may cause complete closure of the caval passage to the right heart
• caval sphincter SubClassOf composed primarily of some skeletal muscle tissue
• caval sphincter SubClassOf surrounds some vena cava
• caval sphincter id UBERON:0035832
• caval sphincter SubClassOf innervated by some phrenic nerve

New Class : apical region of heart ventricle

• apical region of heart ventricle SubClassOf part of some cardiac ventricle
• apical region of heart ventricle SubClassOf mesoderm-derived structure
• apical region of heart ventricle id UBERON:0035837
• apical region of heart ventricle database cross reference MA:0003017
• apical region of heart ventricle has exact synonym apical region of cardiac ventricle
• apical region of heart ventricle SubClassOf zone of organ
• apical region of heart ventricle has related synonym apex of cardiac ventricle { database cross reference=MA:0003017 }
• apical region of heart ventricle label apical region of heart ventricle
• apical region of heart ventricle has obo namespace uberon
• apical region of heart ventricle has related synonym apex of heart ventricle { database cross reference=MA:0003017 }

New Class : apical region of right ventricle

• apical region of right ventricle label apical region of right ventricle
• apical region of right ventricle SubClassOf part of some heart right ventricle
• apical region of right ventricle has exact synonym apical zone of right ventricle { database cross reference=FMA:230605 }
• apical region of right ventricle has obo namespace uberon
• apical region of right ventricle database cross reference FMA:230605
• apical region of right ventricle id UBERON:0035836
• apical region of right ventricle database cross reference http://www.snomedbrowser.com/Codes/Details/264913008
• apical region of right ventricle EquivalentTo apical region of heart ventricle and part of some heart right ventricle
• apical region of right ventricle SubClassOf apical region of heart ventricle

Changed Class objects: 411

Changes for: metaphysis of humerus

• Deleted
  • - metaphysis of humerus EquivalentTo metaphysis and part of some metaphysis
  • - metaphysis of humerus SubClassOf part of some metaphysis
• Added
  • + metaphysis of humerus EquivalentTo metaphysis and part of some humerus
  • + metaphysis of humerus SubClassOf mesoderm-derived structure
  • + metaphysis of humerus SubClassOf part of some humerus

Changes for: rostral linear nucleus

• Deleted
  • - rostral linear nucleus SubClassOf ventral tegmental nucleus
• Added
  • + rostral linear nucleus SubClassOf brainstem nucleus
  • + rostral linear nucleus SubClassOf midbrain nucleus

Changes for: paranigral nucleus

• Deleted
  • - paranigral nucleus SubClassOf ventral tegmental nucleus
• Added
  • + paranigral nucleus SubClassOf brainstem nucleus
  • + paranigral nucleus SubClassOf midbrain nucleus

Changes for: parabrachial pigmental nucleus

• Deleted
  • - parabrachial pigmental nucleus SubClassOf ventral tegmental nucleus
• Added
  • + parabrachial pigmental nucleus SubClassOf brainstem nucleus
  • + parabrachial pigmental nucleus SubClassOf midbrain nucleus

Changes for: labial region

• Deleted
  • - labial region SubClassOf ectoderm-derived structure

Changes for: posterolingual region

• Deleted
  • - posterolingual region SubClassOf ectoderm-derived structure

Changes for: lingual region

• Deleted
  • - lingual region SubClassOf ectoderm-derived structure

Changes for: chondroglossus muscle

• Deleted
  • - chondroglossus muscle SubClassOf ectoderm-derived structure

Changes for: abductor pollicis muscle

• Added
  • + abductor pollicis muscle SubClassOf forelimb muscle

Changes for: dulla

• Deleted
  • - dulla SubClassOf ectoderm-derived structure

Changes for: parietal serous membrane

• Added
  • + parietal serous membrane database cross reference MA:0002448
  • + parietal serous membrane has broad synonym cavity lining { database cross reference=MA:0002448 }

Changes for: jaw region

• Deleted
  • - jaw region SubClassOf ectoderm-derived structure

Changes for: flexor caudalis muscle

• Deleted
  • - flexor caudalis muscle SubClassOf muscle organ
• Added
  • + flexor caudalis muscle SubClassOf skeletal muscle organ

Changes for: great vessel of heart

• Added
  • + great vessel of heart database cross reference EMAPA:36460

Changes for: skin of sole of pes

• Deleted
  • - skin of sole of pes EquivalentTo zone of skin and part of some skin of pes
  • - skin of sole of pes SubClassOf part of some skin of pes
• Added
  • + skin of sole of pes EquivalentTo zone of skin and part of some plantar part of pes

Changes for: oral epithelium from ectoderm

• Added
  • + oral epithelium from ectoderm SubClassOf ecto-epithelium

Changes for: pineal recess of third ventricle

• Added
  • + pineal recess of third ventricle database cross reference EMAPA:18542

Changes for: cavity of feather shaft

• Deleted
  • - cavity of feather shaft EquivalentTo anatomical cavity and part of some feather shaft
  • - cavity of feather shaft SubClassOf part of some feather shaft
• Added
  • + cavity of feather shaft EquivalentTo anatomical cavity and luminal space of some feather shaft
  • + cavity of feather shaft SubClassOf luminal space of some feather shaft

Changes for: m. flexor indicis superficialis proprius

• Deleted
  • - m. flexor indicis superficialis proprius SubClassOf muscle organ
• Added
  • + m. flexor indicis superficialis proprius SubClassOf skeletal muscle organ

Changes for: cavity of feather follicle

• Deleted
  • - cavity of feather follicle EquivalentTo anatomical cavity and part of some feather follicle
  • - cavity of feather follicle SubClassOf part of some feather follicle
• Added
  • + cavity of feather follicle EquivalentTo anatomical cavity and luminal space of some feather follicle
  • + cavity of feather follicle SubClassOf luminal space of some feather follicle

Changes for: acinus of salivary gland

• Deleted
  • - acinus of salivary gland SubClassOf ectoderm-derived structure

Changes for: body of tongue

• Deleted
  • - body of tongue SubClassOf ectoderm-derived structure

Changes for: fold of peritoneum

• Deleted
  • - fold of peritoneum SubClassOf serous membrane
• Added
  • + fold of peritoneum SubClassOf peritoneum

Changes for: flexor hallucis brevis muscle

• Deleted
  • - flexor hallucis brevis muscle SubClassOf muscle of pes

Changes for: brachioradialis

• Deleted
  • - brachioradialis SubClassOf muscle organ
  • - brachioradialis has related synonym brachioradialis muscle { database cross reference=http://en.wikipedia.org/wiki/Brachioradialis }
• Added
  • + brachioradialis SubClassOf muscle of arm
  • + brachioradialis SubClassOf muscle of shoulder
  • + brachioradialis has exact synonym brachioradialis muscle { database cross reference=http://en.wikipedia.org/wiki/Brachioradialis }

Changes for: flexor pollicis brevis muscle

• Deleted
  • - flexor pollicis brevis muscle SubClassOf muscle organ
• Added
  • + flexor pollicis brevis muscle SubClassOf muscle of manus

Changes for: angle of oral opening

• Deleted
  • - angle of oral opening SubClassOf ectoderm-derived structure

Changes for: muscle of Aristotle’s lantern

• Deleted
  • - muscle of Aristotle’s lantern SubClassOf ectoderm-derived structure

Changes for: rectum smooth muscle tissue

• Added
  • + rectum smooth muscle tissue SubClassOf muscle tissue of terminal part of digestive tract

Changes for: lip taste bud

• Deleted
  • - lip taste bud SubClassOf ectoderm-derived structure

Changes for: lobule of mammary gland

• Added
  • + lobule of mammary gland database cross reference EMAPA:36634

Changes for: milk

• Added
  • + milk database cross reference EMAPA:36540

Changes for: iliopsoas

• Deleted
  • - iliopsoas SubClassOf has muscle antagonist some muscle of posterior compartment of thigh
• Added
  • + iliopsoas SubClassOf has muscle antagonist some muscle of posterior compartment of hindlimb stylopod

Changes for: lacrimal

• Deleted
  • - lacrimal definition Investing bone associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. { database cross reference=AAO:EJS }
• Added
  • + lacrimal definition Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. { database cross reference=AAO:EJS }

Changes for: odontoids

• Deleted
  • - odontoids SubClassOf ectoderm-derived structure

Changes for: retromolar triangle

• Deleted
  • - retromolar triangle SubClassOf ectoderm-derived structure

Changes for: posterior segment of eyeball

• Added
  • + posterior segment of eyeball database cross reference EMAPA:36595

Changes for: sensory ganglion

• Added
  • + sensory ganglion database cross reference EMAPA:36596

Changes for: anterior segment of eyeball

• Added
  • + anterior segment of eyeball database cross reference EMAPA:36594

Changes for: obsolete body membrane

• Deleted
  • - body membrane SubClassOf anatomical entity
  • - body membrane comment Not sure this is the correct designation; FMA has “membranous organ” but that doesn’t seem quite right either.
  • - body membrane database cross reference http://uri.neuinfo.org/nif/nifstd/nlx_anat_090201
  • - body membrane definition Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain. { database cross reference=NIFSTD:nlx_anat_090201 }
  • - body membrane has exact synonym body membrane { database cross reference=NIFSTD:nlx_anat_090201 , has synonym type=preferred term when talking about an instance of this class in Homo sapiens }
  • - body membrane label body membrane
• Added
  • + obsolete body membrane comment This term was inherited from the migration of NIFSTD-Anatomy to Uberon. Upon consideration the same concept is better represented by existing classes in Uberon such as “membrnous organ”. The following comment was inherited from http://uri.neuinfo.org/nif/nifstd/ Not sure this is the correct designation; FMA has “membranous organ” but that doesn’t seem quite right either.
  • + obsolete body membrane consider UBERON:0000158
  • + obsolete body membrane consider http://uri.neuinfo.org/nif/nifstd/nlx_anat_090201
  • + obsolete body membrane definition Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain[NIFSTD]. { database cross reference=NIFSTD:nlx_anat_090201 }
  • + obsolete body membrane deprecated true
  • + obsolete body membrane label obsolete body membrane

Changes for: perianal skin

• Added
  • + perianal skin SubClassOf surrounds some anus

Changes for: diencephalon

• Deleted
  • - diencephalon definition Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus[FMA]. The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). { database cross reference=http://en.wikipedia.org/wiki/Diencephalon , database cross reference=FMA:62001 , database cross reference=ZFIN:curator }
• Added
  • + diencephalon definition The division of the forebrain that develops from the foremost primary cerebral vesicle. { database cross reference=http://en.wikipedia.org/wiki/Diencephalon }

Changes for: midbrain

• Deleted
  • - midbrain definition Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct[FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]. { database cross reference=http://en.wikipedia.org/wiki/Midbrain , database cross reference=FMA:61993 , database cross reference=GO:0030901 , database cross reference=ZFIN:curator }
• Added
  • + midbrain definition The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]. { database cross reference=GO:0030901 }

Changes for: endolymph

• Added
  • + endolymph database cross reference EMAPA:36548

Changes for: perilymph

• Added
  • + perilymph database cross reference EMAPA:36549

Changes for: lip

• Deleted
  • - lip SubClassOf ectoderm-derived structure

Changes for: saliva

• Added
  • + saliva database cross reference EMAPA:36536

Changes for: sublingual duct

• Added
  • + sublingual duct database cross reference EMAPA:36564

Changes for: duct of salivary gland

• Deleted
  • - duct of salivary gland SubClassOf ectoderm-derived structure

Changes for: sublingua

• Deleted
  • - sublingua SubClassOf ectoderm-derived structure

Changes for: bony labyrinth

• Added
  • + bony labyrinth database cross reference EMAPA:36580

Changes for: secretion of lacrimal gland

• Added
  • + secretion of lacrimal gland database cross reference EMAPA:36537

Changes for: outer limiting layer of retina

• Added
  • + outer limiting layer of retina database cross reference EMAPA:36518

Changes for: jaw mesenchyme

• Deleted
  • - jaw mesenchyme SubClassOf ectoderm-derived structure

Changes for: lamprey sucker

• Deleted
  • - lamprey sucker SubClassOf ectoderm-derived structure

Changes for: sallet

• Deleted
  • - sallet SubClassOf tectorial membrane of cochlea
  • - sallet definition v=onepage&q=sallet&f=false { database cross reference=PHENOSCAPE:Alex }
• Added
  • + sallet SubClassOf ectoderm-derived structure
  • + sallet SubClassOf organ subunit
  • + sallet SubClassOf part of some tectorial membrane of cochlea
  • + sallet SubClassOf structure with developmental contribution from neural crest
  • + sallet definition A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 { database cross reference=ISBN:9780387714691 , database cross reference=PHENOSCAPE:Alex }
  • + sallet present in taxon http://purl.obolibrary.org/obo/NCBITaxon_35033 { source=ISBN:9780387714691 }
  • + sallet present in taxon http://purl.obolibrary.org/obo/NCBITaxon_8561 { source=ISBN:9780387714691 }

Changes for: inner limiting layer of retina

• Added
  • + inner limiting layer of retina database cross reference EMAPA:36519

Changes for: gas excreted from digestive tract

• Added
  • + gas excreted from digestive tract comment In mammals, mostly produced as a byproduct of bacterial fermentation in the gastrointestinal (GI) tract, especially the colon, and excreted through the rectum
  • + gas excreted from digestive tract has narrow synonym flatus { database cross reference=https://en.wikipedia.org/wiki/Flatulence , has synonym type=latin term }
  • + gas excreted from digestive tract has narrow synonym intestinal gas

Changes for: pterygomandibular raphe

• Deleted
  • - pterygomandibular raphe SubClassOf ectoderm-derived structure

Changes for: lower jaw region

• Deleted
  • - lower jaw region SubClassOf ectoderm-derived structure

Changes for: papilla of tongue

• Deleted
  • - papilla of tongue SubClassOf ectoderm-derived structure

Changes for: tongue

• Deleted
  • - tongue SubClassOf ectoderm-derived structure

Changes for: anterior cerebral vein

• Added
  • + anterior cerebral vein database cross reference EMAPA:36467

Changes for: palatine bone

• Added
  • + palatine bone database cross reference EMAPA:36619

Changes for: obsolete caudal fin

• Deleted
  • - obsolete caudal fin has exact synonym uropt�re { database cross reference=PSPUB:0000135 }
  • - obsolete caudal fin has exact synonym uropt�rygie { database cross reference=PSPUB:0000140 }
• Added
  • + obsolete caudal fin has exact synonym uroptère { database cross reference=PSPUB:0000135 }
  • + obsolete caudal fin has exact synonym uroptérygie { database cross reference=PSPUB:0000140 }

Changes for: intrinsic muscle of tongue

• Deleted
  • - intrinsic muscle of tongue SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
• Added
  • + intrinsic muscle of tongue SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: geniohyoid muscle

• Added
  • + geniohyoid muscle database cross reference EMAPA:36626

Changes for: intrinsic muscle of pes

• Added
  • + intrinsic muscle of pes SubClassOf muscle of pes

Changes for: intrinsic muscle of manus

• Added
  • + intrinsic muscle of manus SubClassOf muscle of manus

Changes for: depressor labii inferioris

• Deleted
  • - depressor labii inferioris SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: urethra muscle tissue

• Deleted
  • - urethra muscle definition A muscle structure that is part of a urethra [Automatically generated definition]. { database cross reference=OBOL:automatic }
  • - urethra muscle external ontology notes FMA class may not be equivalent { external ontology=FMA }
  • - urethra muscle has narrow synonym muscle organ of urethra { database cross reference=OBOL:automatic }
  • - urethra muscle has narrow synonym urethra muscle organ { database cross reference=OBOL:automatic }
  • - urethra muscle label urethra muscle
• Added
  • + urethra muscle tissue definition Any muscle tissue that is part of the urethra. { database cross reference=UBERON:cjm }
  • + urethra muscle tissue label urethra muscle tissue

Changes for: mouth mucosa

• Deleted
  • - mouth mucosa SubClassOf ectoderm-derived structure

Changes for: mediastinum

• Deleted
  • - mediastinum SubClassOf thoracic cavity
  • - mediastinum definition A central thoracic cavity surrounded by loose connective tissue that contains (where present) the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. { database cross reference=http://en.wikipedia.org/wiki/Mediastinum }
  • - mediastinum taxon notes In humans, the mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm { source=WP }
• Added
  • + mediastinum SubClassOf anatomical cavity
  • + mediastinum SubClassOf part of some thoracic cavity
  • + mediastinum SubClassOf surrounded by some mediastinal pleura
  • + mediastinum definition The central part of the thoracic cavity enclosed by the left and right pleurae. { database cross reference=http://en.wikipedia.org/wiki/Mediastinum , database cross reference=UBERON:cjm }

Changes for: lower beak

• Deleted
  • - lower beak SubClassOf ectoderm-derived structure

Changes for: oral gland

• Deleted
  • - oral gland SubClassOf ectoderm-derived structure

Changes for: pancreaticoduodenal artery

• Added
  • + pancreaticoduodenal artery database cross reference EMAPA:36529

Changes for: alveolar artery

• Deleted
  • - alveolar artery SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
• Added
  • + alveolar artery SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: mental artery

• Deleted
  • - mental artery SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
• Added
  • + mental artery SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: anterior part of tongue

• Deleted
  • - anterior part of tongue SubClassOf ectoderm-derived structure

Changes for: posterior part of tongue

• Deleted
  • - posterior part of tongue SubClassOf ectoderm-derived structure

Changes for: copula linguae

• Deleted
  • - copula linguae SubClassOf ectoderm-derived structure

Changes for: sublingual artery

• Deleted
  • - sublingual artery SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
• Added
  • + sublingual artery SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: lingual artery

• Deleted
  • - lingual artery SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: right coronary artery

• Added
  • + right coronary artery database cross reference EMAPA:36532

Changes for: left coronary artery

• Added
  • + left coronary artery database cross reference EMAPA:36531

Changes for: posterior communicating artery

• Added
  • + posterior communicating artery SubClassOf head blood vessel
  • + posterior communicating artery SubClassOf lateral structure
  • + posterior communicating artery SubClassOf mixed endoderm/mesoderm-derived structure
  • + posterior communicating artery SubClassOf structure with developmental contribution from neural crest
  • + posterior communicating artery SubClassOf systemic artery

Changes for: future tongue

• Deleted
  • - future tongue SubClassOf ectoderm-derived structure

Changes for: hypopharyngeal eminence

• Deleted
  • - hypopharyngeal eminence SubClassOf ectoderm-derived structure

Changes for: hypoglossal cord

• Deleted
  • - hypoglossal cord SubClassOf ectoderm-derived structure

Changes for: future diaphragm

• Deleted
  • - future diaphragm EquivalentTo skeletal muscle tissue and has potential to develop into some diaphragm
  • - future diaphragm SubClassOf embryonic tissue
  • - future diaphragm SubClassOf skeletal muscle tissue
• Added
  • + future diaphragm EquivalentTo presumptive structure and has potential to develop into some diaphragm
  • + future diaphragm SubClassOf developmentally induced by some pleuroperitoneal membrane
  • + future diaphragm SubClassOf develops from some head somite

Changes for: submental vein

• Deleted
  • - submental vein SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
• Added
  • + submental vein SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: orbital cavity

• Deleted
  • - orbital cavity EquivalentTo anatomical cavity and part of some orbit of skull
  • - orbital cavity SubClassOf part of some orbit of skull
• Added
  • + orbital cavity EquivalentTo anatomical cavity and luminal space of some orbit of skull
  • + orbital cavity SubClassOf luminal space of some orbit of skull

Changes for: baleen plate bristle

• Deleted
  • - baleen plate bristle SubClassOf ectoderm-derived structure
• Added
  • + baleen plate bristle SubClassOf anatomical structure

Changes for: baleen plate

• Deleted
  • - baleen plate SubClassOf ectoderm-derived structure

Changes for: nephron tubule epithelium

• Added
  • + nephron tubule epithelium database cross reference EMAPA:36524

Changes for: nose tip

• Added
  • + nose tip has related synonym pirula { database cross reference=https://www.abdn.ac.uk/bestiary/translat/84v.hti }

Changes for: lacrimal gland epithelium

• Added
  • + lacrimal gland epithelium database cross reference EMAPA:36515

Changes for: ventral mesentery

• Added
  • + ventral mesentery database cross reference http://en.wikipedia.org/wiki/Ventral_mesentery
  • + ventral mesentery definition Ventral mesentery is the part of the peritoneum closest to the navel. { database cross reference=http://en.wikipedia.org/wiki/Ventral_mesentery }
  • + ventral mesentery development notes degenerates during development except foregut portion

Changes for: urethra skeletal muscle tissue

• Deleted
  • - urethra skeletal muscle label urethra skeletal muscle
• Added
  • + urethra skeletal muscle tissue has related synonym urethra skeletal muscle { database cross reference=MA:0001690 }
  • + urethra skeletal muscle tissue label urethra skeletal muscle tissue

Changes for: lip skeletal muscle

• Deleted
  • - lip skeletal muscle SubClassOf ectoderm-derived structure

Changes for: esophagus skeletal muscle

• Added
  • + esophagus skeletal muscle database cross reference EMAPA:36523

Changes for: corticospinal tract

• Added
  • + corticospinal tract database cross reference EMAPA:36600

Changes for: salivary gland epithelium

• Deleted
  • - salivary gland epithelium SubClassOf ecto-epithelium

Changes for: anatomical cavity

• Added
  • + anatomical cavity database cross reference MA:0002447

Changes for: mediastinal lymph node

• Deleted
  • - mediastinal lymph node SubClassOf thoracic cavity element

Changes for: intramembranous bone

• Added
  • + intramembranous bone database cross reference EMAPA:36615

Changes for: rib skeletal system

• Added
  • + rib skeletal system SubClassOf mesoderm-derived structure
  • + rib skeletal system SubClassOf part of some post-cranial axial skeletal system

Changes for: gustatory epithelium of palate

• Deleted
  • - gustatory epithelium of palate SubClassOf oral epithelium from ectoderm
• Added
  • + gustatory epithelium of palate SubClassOf oral epithelium

Changes for: tongue taste bud

• Deleted
  • - tongue taste bud SubClassOf ectoderm-derived structure

Changes for: sesamoid bone

• Added
  • + sesamoid bone database cross reference EMAPA:36620

Changes for: pleural sac

• Deleted
  • - pleural sac definition Serous sac, which has as parts the pleura and the pleural cavity. Examples: There are only two canonical instances, right and left pleural sacs. { database cross reference=FMA:9690 }
• Added
  • + pleural sac EquivalentTo serous sac and has part some pleura and has part some pleural cavity
  • + pleural sac SubClassOf has part some pleura
  • + pleural sac SubClassOf has part some pleural cavity
  • + pleural sac database cross reference EHDAA2:0004737
  • + pleural sac definition A serous sac that has the pleura and the pleural cavity as parts. { database cross reference=https://github.com/obophenotype/uberon/issues/86 }
  • + pleural sac external ontology notes despite its name the class EHDAA2:0004737 is not a true cavity, it corresponds to what we call the sac { external ontology=EHDAA2 }
  • + pleural sac in subset non informative

Changes for: prostate gland secretion

• Added
  • + prostate gland secretion database cross reference EMAPA:36545

Changes for: mouth floor

• Deleted
  • - mouth floor SubClassOf ectoderm-derived structure

Changes for: inner renal medulla vasa recta

• Added
  • + inner renal medulla vasa recta database cross reference EMAPA:36559

Changes for: outer renal medulla vasa recta

• Added
  • + outer renal medulla vasa recta database cross reference EMAPA:36560

Changes for: limb joint

• Added
  • + limb joint database cross reference EMAPA:36501

Changes for: mesopodium bone

• Added
  • + mesopodium bone database cross reference EMAPA:36579

Changes for: gastrointestinal system mucosa

• Added
  • + gastrointestinal system mucosa database cross reference EMAPA:36591

Changes for: abdominal cavity

• Deleted
  • - abdominal cavity SubClassOf coelemic cavity lumen
  • - abdominal cavity SubClassOf part of some abdomen
  • - abdominal cavity definition body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron). { database cross reference=http://en.wikipedia.org/wiki/Abdominal_cavity }
• Added
  • + abdominal cavity EquivalentTo anatomical space and part of some coelemic cavity lumen and luminal space of some abdomen
  • + abdominal cavity SubClassOf anatomical space
  • + abdominal cavity SubClassOf luminal space of some abdomen
  • + abdominal cavity SubClassOf part of some abdominopelvic cavity
  • + abdominal cavity SubClassOf part of some coelemic cavity lumen
  • + abdominal cavity database cross reference EMAPA:36505
  • + abdominal cavity definition The part of the ventral body cavity that is within the abdomen proper (excluding the pelvic cavity). { database cross reference=UBERON:cjm }
  • + abdominal cavity external ontology notes in FMA this contains the pelvic cavity, but this is inconsistent with the concept of abdominopelvic cavity { external ontology=FMA }

Changes for: supraoccipital bone

• Added
  • + supraoccipital bone database cross reference EMAPA:36618

Changes for: hippocampal sulcus

• Added
  • + hippocampal sulcus database cross reference EMAPA:36471

Changes for: cavity of left ventricle

• Deleted
  • - cavity of left ventricle EquivalentTo anatomical cavity and part of some heart left ventricle
  • - cavity of left ventricle SubClassOf anatomical cavity
  • - cavity of left ventricle SubClassOf part of some heart left ventricle
• Added
  • + cavity of left ventricle EquivalentTo anatomical cavity and luminal space of some heart left ventricle
  • + cavity of left ventricle SubClassOf cavity of cardiac chamber
  • + cavity of left ventricle SubClassOf luminal space of some heart left ventricle

Changes for: cavity of left atrium

• Deleted
  • - cavity of left atrium EquivalentTo anatomical cavity and part of some left cardiac atrium
  • - cavity of left atrium SubClassOf anatomical cavity
  • - cavity of left atrium SubClassOf part of some left cardiac atrium
• Added
  • + cavity of left atrium EquivalentTo anatomical cavity and luminal space of some left cardiac atrium
  • + cavity of left atrium SubClassOf cavity of cardiac chamber
  • + cavity of left atrium SubClassOf luminal space of some left cardiac atrium

Changes for: semimembranosus muscle

• Deleted
  • - semimembranosus muscle SubClassOf part of some hindlimb

Changes for: cavity of right atrium

• Deleted
  • - cavity of right atrium EquivalentTo anatomical cavity and part of some right cardiac atrium
  • - cavity of right atrium SubClassOf anatomical cavity
  • - cavity of right atrium SubClassOf part of some right cardiac atrium
• Added
  • + cavity of right atrium EquivalentTo anatomical cavity and luminal space of some right cardiac atrium
  • + cavity of right atrium SubClassOf cavity of cardiac chamber
  • + cavity of right atrium SubClassOf luminal space of some right cardiac atrium

Changes for: cornual diverticulum

• Deleted
  • - cornual diverticulum EquivalentTo anatomical cavity and part of some frontal sinus and part of some horn
  • - cornual diverticulum SubClassOf part of some horn
• Added
  • + cornual diverticulum EquivalentTo anatomical cavity and part of some frontal sinus and luminal space of some horn
  • + cornual diverticulum SubClassOf luminal space of some horn

Changes for: lesser sac

• Deleted
  • - lesser sac SubClassOf body cavity or lining
  • - lesser sac SubClassOf part of some peritoneum
  • - lesser sac definition The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Lesser_sac }
• Added
  • + lesser sac SubClassOf organ subunit
  • + lesser sac SubClassOf part of some peritoneal sac
  • + lesser sac definition The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Lesser_sac }
  • + lesser sac development notes The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach
  • + lesser sac taxon notes In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac

Changes for: biceps femoris

• Deleted
  • - biceps femoris SubClassOf part of some hindlimb stylopod

Changes for: semitendinosus

• Deleted
  • - semitendinosus SubClassOf part of some hindlimb

Changes for: parietal peritoneum

• Deleted
  • - parietal peritoneum SubClassOf serous membrane
  • - parietal peritoneum database cross reference EMAPA:16139
  • - parietal peritoneum database cross reference MA:0000449
  • - parietal peritoneum has exact synonym peritoneal cavity lining { database cross reference=MA:0000449 }
• Added
  • + parietal peritoneum EquivalentTo parietal serous membrane and part of some peritoneum
  • + parietal peritoneum SubClassOf parietal serous membrane
  • + parietal peritoneum database cross reference EMAPA:16591
  • + parietal peritoneum has exact synonym parietal serous membrane of peritoneum { database cross reference=UBERON:cjm }
  • + parietal peritoneum has related synonym peritoneal cavity lining

Changes for: tibial nerve

• Added
  • + tibial nerve database cross reference EMAPA:36512

Changes for: rib endochondral element

• Added
  • + rib endochondral element SubClassOf mesoderm-derived structure

Changes for: tail skin

• Added
  • + tail skin database cross reference EMAPA:36502

Changes for: left lung terminal bronchiole

• Added
  • + left lung terminal bronchiole database cross reference EMAPA:36636

Changes for: right lung respiratory bronchiole

• Added
  • + right lung respiratory bronchiole database cross reference EMAPA:36637

Changes for: right lung terminal bronchiole

• Added
  • + right lung terminal bronchiole database cross reference EMAPA:36638

Changes for: left lung respiratory bronchiole

• Added
  • + left lung respiratory bronchiole database cross reference EMAPA:36635

Changes for: zona limitans intrathalamica

• Added
  • + zona limitans intrathalamica database cross reference EMAPA:36604

Changes for: retina blood vessel

• Added
  • + retina blood vessel database cross reference EMAPA:36520

Changes for: corneal blood vessel

• Added
  • + corneal blood vessel database cross reference EMAPA:36611

Changes for: leg blood vessel

• Added
  • + leg blood vessel database cross reference EMAPA:36500

Changes for: limb blood vessel

• Added
  • + limb blood vessel database cross reference EMAPA:36598

Changes for: upper lip protuberances

• Deleted
  • - upper lip protuberances SubClassOf ectoderm-derived structure

Changes for: dermis connective tissue

• Added
  • + dermis connective tissue database cross reference EMAPA:36509

Changes for: bile canaliculus

• Added
  • + bile canaliculus database cross reference EMAPA:36534

Changes for: lunge feeding organ

• Deleted
  • - lunge feeding organ SubClassOf ectoderm-derived structure

Changes for: lunge feeding vibrissa

• Deleted
  • - lunge feeding vibrissa SubClassOf ectoderm-derived structure

Changes for: lunge feeding organ papilla

• Deleted
  • - lunge feeding organ papilla SubClassOf ectoderm-derived structure

Changes for: gastroepiploic artery

• Deleted
  • - gastroepiploic artery definition Abdominal artery that follows the curvature of the stomach. The right gasteroepiploic artery is frequently used in coronary artery bypass grafting, myocardial revascularization, and other vascular reconstruction. { database cross reference=MESH:A07.231.114.379 }
• Added
  • + gastroepiploic artery SubClassOf abdomen blood vessel
  • + gastroepiploic artery SubClassOf part of some abdomen
  • + gastroepiploic artery SubClassOf supplies some greater omentum
  • + gastroepiploic artery SubClassOf supplies some stomach
  • + gastroepiploic artery database cross reference http://en.wikipedia.org/wiki/Gastroepiploic_artery
  • + gastroepiploic artery definition One of two (right and left) arteries along the greater curvature of the stomach that supply blood to the greater omentum and stomach. { database cross reference=NCIT:C52857 }

Changes for: transversus abdominis muscle

• Deleted
  • - transversus abdominis muscle SubClassOf develops from some body-wall mesenchyme
  • - transversus abdominis muscle definition The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Transversus_abdominis_muscle }
• Added
  • + transversus abdominis muscle EquivalentTo skeletal muscle organ and part of some anterior abdominal wall and immediately deep to some abdominal internal oblique muscle
  • + transversus abdominis muscle SubClassOf immediately deep to some abdominal internal oblique muscle
  • + transversus abdominis muscle SubClassOf innervated by some intercostal nerve
  • + transversus abdominis muscle definition The lateral abdominal wall muscle that is deep to the internal oblique. { database cross reference=ISBN:9781435464339 , database cross reference=UBERON:cjm }

Changes for: duodenal gland

• Added
  • + duodenal gland database cross reference EMAPA:36522

Changes for: epicardial fat

• Deleted
  • - epicardial fat EquivalentTo adipose tissue and part of some epicardium
  • - epicardial fat SubClassOf adipose tissue
  • - epicardial fat SubClassOf part of some epicardium
  • - epicardial fat definition A adipose tissue that is part of a epicardium. { database cross reference=OBOL:automatic }
• Added
  • + epicardial fat EquivalentTo adipose tissue and adjacent to some epicardium and adjacent to some visceral serous pericardium and surrounds some heart
  • + epicardial fat SubClassOf adjacent to some epicardium
  • + epicardial fat SubClassOf adjacent to some visceral serous pericardium
  • + epicardial fat SubClassOf pericardial fat
  • + epicardial fat SubClassOf surrounds some heart
  • + epicardial fat database cross reference http://www.snomedbrowser.com/Codes/Details/42267001
  • + epicardial fat definition Visceral intrapericardial fat contiguous with the myocardial surface. { database cross reference=http://dx.doi.org/10.5935/abc.20130138 }
  • + epicardial fat has exact synonym epicardial adipose tissue
  • + epicardial fat has exact synonym pericardial adipose tissue

Changes for: serosa of stomach

• Deleted
  • - serosa of stomach SubClassOf stomach region

Changes for: uterine spiral artery

• Added
  • + uterine spiral artery database cross reference EMAPA:36612

Changes for: mesenchyme of sublingual gland

• Deleted
  • - mesenchyme of sublingual gland SubClassOf ectoderm-derived structure

Changes for: abdominal fat pad

• Added
  • + abdominal fat pad database cross reference EMAPA:36499

Changes for: mesenchyme of tongue

• Deleted
  • - mesenchyme of tongue SubClassOf ectoderm-derived structure

Changes for: myocoele

• Deleted
  • - myocoele SubClassOf part of some myotome
• Added
  • + myocoele EquivalentTo anatomical cavity and luminal space of some myotome
  • + myocoele SubClassOf luminal space of some myotome

Changes for: thymoid

• Deleted
  • - thymoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
  • - thymoid SubClassOf neural crest-derived structure
  • - thymoid SubClassOf part of some branchial basket
• Added
  • + thymoid SubClassOf located in some branchial basket
  • + thymoid SubClassOf mixed endoderm/mesoderm-derived structure
  • + thymoid SubClassOf part of some chordate pharynx

Changes for: abdominal mammary gland

• Added
  • + abdominal mammary gland database cross reference EMAPA:36507

Changes for: head blood vessel

• Added
  • + head blood vessel database cross reference EMAPA:36610

Changes for: trunk bone

• Added
  • + trunk bone database cross reference EMAPA:36583

Changes for: trabecula carnea cardiac muscle tissue

• Added
  • + trabecula carnea cardiac muscle tissue database cross reference EMAPA:36573

Changes for: costochondral joint

• Added
  • + costochondral joint database cross reference EMAPA:36490

Changes for: diaphragm

• Deleted
  • - diaphragm SubClassOf mesoderm-derived structure
  • - diaphragm SubClassOf thoracic segment organ
  • - diaphragm comment Comparative anatomy and evolution)
• Added
  • + diaphragm SubClassOf thoracic segment muscle
  • + diaphragm development notes originate from the cervical somites, likely C3-C5[PMID:23586979]
  • + diaphragm function notes barrier between thoracic and abdominal cavities; stop gastric contents from refluxing into the oesophagus
  • + diaphragm function notes breathing control
  • + diaphragm taxon notes The existence of some membrane separating the pharynx from the stomach can be traced widely among the chordates. Thus amphioxus possesses an atrium by which water exits the pharynx, which has been argued (and disputed) to be homologous to structures in ascidians and hagfishes.[3]
  • + diaphragm taxon notes Comparative anatomy and evolution)

Changes for: scale circulus

• Deleted
  • - circulus has exact synonym cr�tule { database cross reference=PSPUB:0000149 }
  • - circulus label circulus
• Added
  • + scale circulus has exact synonym crétule { database cross reference=PSPUB:0000149 }
  • + scale circulus label scale circulus

Changes for: tectorial membrane of cochlea

• Added
  • + tectorial membrane of cochlea taxon notes in some squamate lineages, the tectorial membrane may not cover the whole cochlear duct/papilla. In some lineages, the tectorial membrane is divided into units called sallets[ISBN:9780387714691]

Changes for: corpora quadrigemina

• Added
  • + corpora quadrigemina database cross reference EMAPA:36556

Changes for: anterior limb of parapophysis 4

• Deleted
  • - anterior limb of parapophysis 4 has exact synonym M�llerian ramus { database cross reference=TAO:0002044 }
• Added
  • + anterior limb of parapophysis 4 has exact synonym Müllerian ramus { database cross reference=TAO:0002044 }

Changes for: crus of diaphragm

• Deleted
  • - crus of diaphragm SubClassOf organ part
  • - crus of diaphragm definition The crura of the diaphragm are tendinous structures that extend inferiorly from the diaphragm to attach to the vertebral column. { database cross reference=http://en.wikipedia.org/wiki/Crus_of_diaphragm }
• Added
  • + crus of diaphragm SubClassOf attaches to some central tendon of diaphragm
  • + crus of diaphragm SubClassOf intersects midsagittal plane of some diaphragm
  • + crus of diaphragm SubClassOf organ subunit
  • + crus of diaphragm comment Classification notes: May be considered an external sphincter[PMID:8224664]
  • + crus of diaphragm database cross reference VHOG:0001546
  • + crus of diaphragm definition The domain of the diaphragm that is located dorsally and attaches to the vertebrae and surrounds the esophagus and aorta. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23586979 }
  • + crus of diaphragm has exact synonym crural diaphragm { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23586979 }

Changes for: cartilaginous joint

• Added
  • + cartilaginous joint database cross reference EMAPA:36581

Changes for: spiral organ of cochlea

• Added
  • + spiral organ of cochlea has related synonym auditory papilla { database cross reference=ISBN:9780387714691 , has synonym type=taxonomic disambiguation }
  • + spiral organ of cochlea has related synonym auditory papillae { database cross reference=ISBN:9780387714691 , has synonym type=plural term }
  • + spiral organ of cochlea taxon notes in basal early lizards, organized into 3 tonotopically organized areas, the outer areas lack a tectorial membrane[ISBN:9780387714691]

Changes for: rib

• Deleted
  • - rib SubClassOf mesoderm-derived structure
  • - rib definition An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body. { database cross reference=http://en.wikipedia.org/wiki/Rib , database cross reference=ZFIN:curator }
• Added
  • + rib definition An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. { database cross reference=http://en.wikipedia.org/wiki/Rib , database cross reference=ZFIN:curator }
  • + rib function notes They protect and support internal organs and enable lungs to expand by expanding the chest.
  • + rib taxon notes In most vertebrates, ribs surround the chest. In some species, especially snakes, ribs may provide support and protection for the entire body

Changes for: intraorbital lacrimal gland

• Added
  • + intraorbital lacrimal gland database cross reference EMAPA:36578

Changes for: exorbital lacrimal gland

• Added
  • + exorbital lacrimal gland database cross reference EMAPA:36577

Changes for: thoracic cavity

• Deleted
  • - thoracic cavity SubClassOf part of some thoracic segment of trunk
  • - thoracic cavity definition Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]. { database cross reference=http://en.wikipedia.org/wiki/Thoracic_cavity , database cross reference=FMA:7565 }
  • - thoracic cavity has related synonym cavitas thoracis { database cross reference=http://en.wikipedia.org/wiki/Thoracic_cavity , has synonym type=latin term }
• Added
  • + thoracic cavity EquivalentTo anatomical space and part of some coelemic cavity lumen and luminal space of some thoracic segment of trunk
  • + thoracic cavity SubClassOf luminal space of some thoracic segment of trunk
  • + thoracic cavity SubClassOf part of some coelemic cavity lumen
  • + thoracic cavity database cross reference EMAPA:36497
  • + thoracic cavity definition The part of the coelemic cavity lumen that is enclosed by the walls of the thorax. { database cross reference=http://en.wikipedia.org/wiki/Thoracic_cavity , database cross reference=UBERON:cjm }
  • + thoracic cavity has exact synonym cavitas thoracis { database cross reference=http://en.wikipedia.org/wiki/Thoracic_cavity , has synonym type=latin term }
  • + thoracic cavity has exact synonym thoracic lumen
  • + thoracic cavity taxon notes In many species, the diaphragm separates thoracic and abdominal cavities

Changes for: visceral peritoneum

• Deleted
  • - visceral peritoneum SubClassOf serous membrane
• Added
  • + visceral peritoneum EquivalentTo visceral serous membrane and part of some peritoneum
  • + visceral peritoneum SubClassOf visceral serous membrane
  • + visceral peritoneum has exact synonym visceral serous membrane of peritoneum { database cross reference=UBERON:cjm }

Changes for: peritoneal cavity

• Deleted
  • - peritoneal cavity EquivalentTo anatomical cavity and part of some peritoneum and adjacent to some visceral peritoneum and adjacent to some parietal peritoneum
  • - peritoneal cavity SubClassOf anatomical cavity
  • - peritoneal cavity SubClassOf part of some peritoneum
  • - peritoneal cavity database cross reference EMAPA:16139
  • - peritoneal cavity database cross reference EMAPA:16886
  • - peritoneal cavity database cross reference EMAPA:18461
  • - peritoneal cavity definition Anatomical cavity bounded by visceral and parietal peritoneum { database cross reference=http://en.wikipedia.org/wiki/Peritoneal_cavity , database cross reference=http://orcid.org/0000-0002-6601-2165 }
• Added
  • + peritoneal cavity EquivalentTo anatomical cavity and adjacent to some visceral peritoneum and adjacent to some parietal peritoneum and luminal space of some peritoneal sac
  • + peritoneal cavity SubClassOf luminal space of some peritoneal sac
  • + peritoneal cavity SubClassOf part of some peritoneal sac
  • + peritoneal cavity SubClassOf serous cavity
  • + peritoneal cavity database cross reference EMAPA:16138
  • + peritoneal cavity definition Anatomical cavity bounded by visceral and parietal peritoneum { database cross reference=http://en.wikipedia.org/wiki/Peritoneal_cavity , database cross reference=http://orcid.org/0000-0002-6601-2165 , database cross reference=https://github.com/obophenotype/uberon/issues/86 }

Changes for: inferior recess of lesser sac

• Deleted
  • - inferior recess of lesser sac SubClassOf body cavity or lining
• Added
  • + inferior recess of lesser sac SubClassOf anatomical cavity

Changes for: strand of pelage hair

• Added
  • + strand of pelage hair database cross reference EMAPA:36485

Changes for: superior recess of lesser sac

• Deleted
  • - superior recess of lesser sac SubClassOf body cavity or lining
• Added
  • + superior recess of lesser sac SubClassOf anatomical cavity

Changes for: lingual septum

• Deleted
  • - lingual septum SubClassOf ectoderm-derived structure

Changes for: strand of awl hair

• Added
  • + strand of awl hair database cross reference EMAPA:36639

Changes for: strand of auchene hair

• Added
  • + strand of auchene hair database cross reference EMAPA:36527

Changes for: strand of zigzag hair

• Added
  • + strand of zigzag hair database cross reference EMAPA:36640

Changes for: strand of guard hair

• Added
  • + strand of guard hair database cross reference EMAPA:36528

Changes for: arrector muscle

• Deleted
  • - arrector muscle SubClassOf muscle organ
• Added
  • + arrector muscle SubClassOf skeletal muscle organ

Changes for: buccal papilla

• Deleted
  • - buccal papilla SubClassOf ectoderm-derived structure

Changes for: intermediolateral nucleus

• Added
  • + intermediolateral nucleus database cross reference EMAPA:36565

Changes for: substantia gelatinosa

• Added
  • + substantia gelatinosa database cross reference EMAPA:36510

Changes for: nucleus prepositus

• Added
  • + nucleus prepositus database cross reference EMAPA:36622

Changes for: habenulo-interpeduncular tract

• Added
  • + habenulo-interpeduncular tract database cross reference EMAPA:36606

Changes for: parvocellular oculomotor nucleus

• Deleted
  • - parvocellular oculomotor nucleus SubClassOf part of some oculomotor nuclear complex
  • - parvocellular oculomotor nucleus has exact synonym Edinger-Westphal nucleus
  • - parvocellular oculomotor nucleus has exact synonym accessory oculomotor nucleus
  • - parvocellular oculomotor nucleus has exact synonym oculomotor nucleus, parvocellular part
• Added
  • + parvocellular oculomotor nucleus SubClassOf part of some midbrain tegmentum
  • + parvocellular oculomotor nucleus external ontology notes NIFSTD places this in oculomotor nuclear complex but this conflicts with disjointness axioms from MBA, as well as location described in Wikipedia, and is not supported in any other ontology { external ontology=NIF }
  • + parvocellular oculomotor nucleus function notes The Edinger-Westphal nucleus supplies preganglionic parasympathetic fibers to the eye, constricting the pupil, accommodating the lens, and convergence of the eyes. It has also been implicated in the mirroring of pupil size in sad facial expressions[WP]
  • + parvocellular oculomotor nucleus has broad synonym EW { database cross reference=HBA:9449 , has synonym type=abbreviation }
  • + parvocellular oculomotor nucleus has exact synonym Edinger-Westphal nucleus { database cross reference=http://en.wikipedia.org/wiki/Edinger-westphal_nucleus }
  • + parvocellular oculomotor nucleus has exact synonym accessory oculomotor nucleus { database cross reference=http://en.wikipedia.org/wiki/Edinger-westphal_nucleus }
  • + parvocellular oculomotor nucleus has related synonym oculomotor nucleus, parvocellular part { database cross reference=NIFSTD:birnlex_822 , has synonym type=indicates that a synonym is used in an inconsistent or confusing way, typically between species }
  • + parvocellular oculomotor nucleus location notes The paired nuclei are posterior to the main motor nucleus (oculomotor nucleus) and anterolateral to the cerebral aqueduct in the rostral midbrain at the level of the superior colliculus. It is the most rostral of the parasympathetic nuclei in the brain stem.[WP]

Changes for: nerve fasciculus

• Added
  • + nerve fasciculus database cross reference EMAPA:36605

Changes for: musculotendinous bundle

• Deleted
  • - musculotendinous bundle SubClassOf muscle organ
• Added
  • + musculotendinous bundle SubClassOf skeletal muscle tissue

Changes for: chin

• Deleted
  • - chin SubClassOf ectoderm-derived structure

Changes for: humeral facet on the ulna

• Deleted
  • - humeral facet on the ulna. label humeral facet on the ulna.
• Added
  • + humeral facet on the ulna label humeral facet on the ulna

Changes for: urine

• Added
  • + urine database cross reference EMAPA:36554

Changes for: parotid main excretory duct

• Added
  • + parotid main excretory duct database cross reference EMAPA:36563

Changes for: pericardial cavity

• Deleted
  • - pericardial cavity EquivalentTo coelemic cavity lumen and part of some pericardial sac and surrounded by some serous pericardium
  • - pericardial cavity definition Cavity of serous sac surrounded by serous pericardium. { database cross reference=FMA:11350 }
• Added
  • + pericardial cavity EquivalentTo anatomical cavity and luminal space of some pericardial sac
  • + pericardial cavity SubClassOf contains some pericardial fluid
  • + pericardial cavity SubClassOf luminal space of some pericardial sac
  • + pericardial cavity SubClassOf serous cavity
  • + pericardial cavity definition A potential space between the visceral and parietal layers of the pericardium. { database cross reference=https://en.wikipedia.org/wiki/Pericardium }
  • + pericardial cavity external ontology notes check ZFA, should actually be thoracic cavity. Note that Hyman defines the cavity as the space between the heart and the sac (but defines the sac as parietal) { external ontology=ZFA }

Changes for: bony vertebral centrum

• Added
  • + bony vertebral centrum database cross reference EMAPA:36588

Changes for: feather vane

• Deleted
  • - feather vane SubClassOf branching part of some feather rachis
• Added
  • + feather vane SubClassOf connected to some feather rachis

Changes for: Aristotle’s lantern

• Deleted
  • - Aristotle’s lantern SubClassOf ectoderm-derived structure

Changes for: pterygoid bone

• Added
  • + pterygoid bone database cross reference EMAPA:36617

Changes for: pelvic cavity

• Deleted
  • - pelvic cavity EquivalentTo anatomical cavity and luminal space of some pelvic region of trunk
  • - pelvic cavity SubClassOf part of some abdominal cavity
  • - pelvic cavity definition The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded ‘house’. It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness. { database cross reference=http://en.wikipedia.org/wiki/Pelvic_cavity }
• Added
  • + pelvic cavity EquivalentTo anatomical cavity and part of some coelemic cavity lumen and luminal space of some pelvic region of trunk
  • + pelvic cavity SubClassOf part of some abdominopelvic cavity
  • + pelvic cavity SubClassOf part of some coelemic cavity lumen
  • + pelvic cavity definition The part of the ventral body cavity that is within the pelvis. { database cross reference=UBERON:cjm }

Changes for: cranial cavity

• Deleted
  • - cranial cavity definition The cranial cavity, or intracranial space, is the space formed inside the skull. The brain occupies the cranial cavity, which is lined by the meninges and which contains cerebrospinal fluid to cushion blows. Eight fused cranial bones together form the cranial cavity: the frontal, occipital, sphenoid and ethmoid bones, and two each of the parietal and temporal bones. The capacity of an adult human cranial cavity is 1,200-1,700 cm. { database cross reference=http://en.wikipedia.org/wiki/Cranial_cavity }
• Added
  • + cranial cavity definition Anatomical cavity that is the lumen of the skull and contains the brain. { database cross reference=UBERON:cjm }

Changes for: saphenous nerve

• Added
  • + saphenous nerve database cross reference EMAPA:36625

Changes for: mandibular process mesenchyme from head mesenchyme

• Deleted
  • - mandibular process mesenchyme from head mesenchyme SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
• Added
  • + mandibular process mesenchyme from head mesenchyme SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: prostate duct

• Added
  • + prostate duct database cross reference EMAPA:36568

Changes for: cochlear labyrinth

• Added
  • + cochlear labyrinth database cross reference EMAPA:36569

Changes for: obsolete median fin

• Deleted
  • - obsolete median fin has exact synonym p�rissopt�rygie { database cross reference=PSPUB:0000140 }
• Added
  • + obsolete median fin has exact synonym périssoptérygie { database cross reference=PSPUB:0000140 }

Changes for: arch of centrum of vertebra

• Added
  • + arch of centrum of vertebra database cross reference EMAPA:36614

Changes for: dermal layer of tongue

• Deleted
  • - dermal layer of tongue SubClassOf ectoderm-derived structure

Changes for: pyramidal layer of CA2

• Added
  • + pyramidal layer of CA2 database cross reference EMAPA:36480

Changes for: parietal pleura

• Deleted
  • - parietal pleura SubClassOf parietal serous membrane
  • - parietal pleura SubClassOf pleura
  • - parietal pleura definition the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax. { database cross reference=http://en.wikipedia.org/wiki/Parietal_pleura }
• Added
  • + parietal pleura EquivalentTo organ component layer and part of some pleura and adjacent to some thoracic cavity
  • + parietal pleura SubClassOf adjacent to some thoracic cavity
  • + parietal pleura SubClassOf mixed endoderm/mesoderm-derived structure
  • + parietal pleura SubClassOf organ component layer
  • + parietal pleura comment the part of the pleura external to the visceral pleura. It lines the inner surface of the chest wall, covers the diaphragm, and is reflected over the structures occupying the middle of the thorax
  • + parietal pleura definition The outer serous membrane of the pulmonary pleural. { database cross reference=https://en.wikipedia.org/wiki/Pulmonary_pleurae , database cross reference=UBERON:cjm }

Changes for: visceral pleura

• Deleted
  • - visceral pleura SubClassOf parietal serous membrane
  • - visceral pleura SubClassOf pleura
  • - visceral pleura comment See comments for pleura
  • - visceral pleura database cross reference http://en.wikipedia.org/wiki/Visceral_pleura
  • - visceral pleura definition Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung.[FMA] { database cross reference=http://en.wikipedia.org/wiki/Visceral_pleura , database cross reference=FMA:FMA }
  • - visceral pleura has exact synonym pulmonary pleura
• Added
  • + visceral pleura EquivalentTo organ component layer and part of some pleura and adjacent to some lung
  • + visceral pleura SubClassOf adjacent to some lung
  • + visceral pleura SubClassOf mixed endoderm/mesoderm-derived structure
  • + visceral pleura SubClassOf visceral serous membrane
  • + visceral pleura definition The inner serous membrane of the pulmonary pleural. The visceral pleura lines the lungs. { database cross reference=https://en.wikipedia.org/wiki/Pulmonary_pleurae , database cross reference=UBERON:cjm }
  • + visceral pleura external ontology notes FMA treats this as part of the lungs { external ontology=FMA }
  • + visceral pleura has exact synonym pulmonary visceral pleura
  • + visceral pleura has related synonym pulmonary pleura { database cross reference=FMA:9734 , has synonym type=indicates that a synonym is used in an inconsistent or confusing way, typically between species }

Changes for: pleural cavity

• Deleted
  • - pleural cavity EquivalentTo coelemic cavity lumen and part of some pleural sac
  • - pleural cavity SubClassOf coelemic cavity lumen
  • - pleural cavity SubClassOf part of some pleural sac
  • - pleural cavity definition Cavity of serous sac surropunded by the pleura.[FMA] { database cross reference=http://en.wikipedia.org/wiki/Pleural_cavity , database cross reference=FMA:FMA }
  • - pleural cavity external ontology notes the EHDAA2 class is not quite equivalent. See https://github.com/obophenotype/uberon/issues/86 { external ontology=EHDAA2 }
  • - pleural cavity has related synonym cavitas pleurallis { database cross reference=http://en.wikipedia.org/wiki/Pleural_cavity , has synonym type=latin term }
• Added
  • + pleural cavity EquivalentTo anatomical cavity and luminal space of some pleural sac
  • + pleural cavity SubClassOf adjacent to some parietal pleura
  • + pleural cavity SubClassOf adjacent to some visceral pleura
  • + pleural cavity SubClassOf luminal space of some pleural sac
  • + pleural cavity SubClassOf serous cavity
  • + pleural cavity definition The fluid-filled cavity that lies between the visceral and parietal pleurae. { database cross reference=https://en.wikipedia.org/wiki/Pleural_cavity , database cross reference=https://github.com/obophenotype/uberon/issues/86 }
  • + pleural cavity external ontology notes the EHDAA2 class of the same is not equivalent. See https://github.com/obophenotype/uberon/issues/86 { external ontology=EHDAA2 }
  • + pleural cavity function notes The contraction of the diaphragm creates a negative pressure within the pleural cavity which forces the lungs to expand resulting in passive exhalation and active inhalation. This breathing process can be made forceful through the contraction of the external intercostal muscles which forces the rib cage to expand and add to the negative pressure in the pleural cavity causing the lungs to fill with air. The fluid in the cavity provides lubrication and cushioning
  • + pleural cavity has exact synonym cavitas pleuralis { database cross reference=http://en.wikipedia.org/wiki/Pleural_cavity , has synonym type=latin term }
  • + pleural cavity has related synonym cavitum pleuralae { database cross reference=http://en.wikipedia.org/wiki/Pleural_cavity , has synonym type=latin term }
  • + pleural cavity has related synonym cavitum pleurale { database cross reference=http://en.wikipedia.org/wiki/Pleural_cavity , has synonym type=latin term }

Changes for: parietal serous pericardium

• Deleted
  • - parietal serous pericardium definition Parietal serous membrane which is part of the serous membrane. { database cross reference=http://orcid.org/0000-0002-6601-2165 }
• Added
  • + parietal serous pericardium definition Parietal serous membrane which is part of the pericardium and forms the outer layer of the pericardial sac. { database cross reference=http://orcid.org/0000-0002-6601-2165 }
  • + parietal serous pericardium has related synonym pericardial sac { database cross reference=http://dx.doi.org/10.5962/bhl.title.1013 , has synonym type=indicates that a synonym is used in an inconsistent or confusing way, typically between species }

Changes for: pericardium

• Deleted
  • - pericardium SubClassOf cavity lining
  • - pericardium SubClassOf squamous epithelium
• Added
  • + pericardium SubClassOf multi-tissue structure
  • + pericardium external ontology notes In GO the concept of pericardium is developmental implicitly epithelial, but here it represents a multi-tissue structure encompassing the sac (epithelium plus connective) and cavity { external ontology=FMA }
  • + pericardium external ontology notes this class denotes a combination of fibrous PC + PC sac (itself a combination of cavity, epithelium and connective tissue). Many sources use the term ‘pericardium’ to denote either just the serous membrane (ZFA) or the epithelium (GO) { external ontology=ZFA }

Changes for: pericardial sac

• Deleted
  • - pericardial sac definition a double-walled sac containing the heart and the roots of the great vessels. { database cross reference=http://en.wikipedia.org/wiki/Pericardium }
• Added
  • + pericardial sac definition a double-walled sac containing the heart and the roots of the great vessels. { database cross reference=http://en.wikipedia.org/wiki/Pericardium , database cross reference=https://github.com/obophenotype/uberon/issues/86 }

Changes for: oral epithelium

• Deleted
  • - oral epithelium SubClassOf ecto-epithelium

Changes for: visceral serous pericardium

• Deleted
  • - visceral serous pericardium has related synonym lamina visceralis pericardii serosi { database cross reference=http://en.wikipedia.org/wiki/Epicardium , has synonym type=latin term }
• Added
  • + visceral serous pericardium SubClassOf has part some epicardium
  • + visceral serous pericardium has exact synonym lamina visceralis pericardii serosi { database cross reference=http://en.wikipedia.org/wiki/Epicardium , has synonym type=latin term }

Changes for: ventral tegmental nucleus

• Deleted
  • - ventral tegmental nucleus EquivalentTo nucleus of brain and part of some ventral tegmental area
  • - ventral tegmental nucleus SubClassOf part of some ventral tegmental area
• Added
  • + ventral tegmental nucleus SubClassOf part of some midbrain tegmentum

Changes for: anterior abdominal wall muscle

• Added
  • + anterior abdominal wall muscle SubClassOf develops from some body-wall mesenchyme
  • + anterior abdominal wall muscle has exact synonym ventral abdominal wall muscle { database cross reference=UBERON:cjm }

Changes for: muscle of posterior compartment of hindlimb stylopod

• Deleted
  • - hamstring muscle SubClassOf muscle organ
  • - hamstring muscle definition In human anatomy, the hamstring refers to one of the three posterior thigh muscles, or to the tendons that make up the borders of the space behind the knee. In modern anatomical contexts, however, they usually refer to the posterior thigh muscles, or the tendons of the semitendinosus, the semimembranosus and the biceps femoris. In quadrupeds, it refers to the single large tendon found behind the knee or comparable area. [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Hamstring }
  • - hamstring muscle has exact synonym hamstring muscles
  • - hamstring muscle has exact synonym hamstring muscles set
  • - hamstring muscle has exact synonym hamstrings
  • - hamstring muscle label hamstring muscle
• Added
  • + muscle of posterior compartment of hindlimb stylopod SubClassOf hindlimb stylopod muscle
  • + muscle of posterior compartment of hindlimb stylopod SubClassOf part of some hindlimb stylopod
  • + muscle of posterior compartment of hindlimb stylopod database cross reference FMA:22427
  • + muscle of posterior compartment of hindlimb stylopod database cross reference http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh
  • + muscle of posterior compartment of hindlimb stylopod definition Any of the posterior thigh muscles. [WP,modified]. { database cross reference=http://en.wikipedia.org/wiki/Hamstring }
  • + muscle of posterior compartment of hindlimb stylopod has alternative id UBERON:0008538
  • + muscle of posterior compartment of hindlimb stylopod has exact synonym hamstring muscle { database cross reference=MA:0002312 }
  • + muscle of posterior compartment of hindlimb stylopod has exact synonym muscle of posterior compartment of thigh { database cross reference=FMA:22427 }
  • + muscle of posterior compartment of hindlimb stylopod has exact synonym posterior femoral muscle { database cross reference=FMA:22427 }
  • + muscle of posterior compartment of hindlimb stylopod has related synonym muscularis compartimentum femoris posterius { database cross reference=http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh , has synonym type=latin term }
  • + muscle of posterior compartment of hindlimb stylopod has related synonym posterior fascial compartment of thigh { database cross reference=http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh }
  • + muscle of posterior compartment of hindlimb stylopod has related synonym posterior femoral muscles { database cross reference=http://en.wikipedia.org/wiki/Posterior_compartment_of_thigh }
  • + muscle of posterior compartment of hindlimb stylopod label muscle of posterior compartment of hindlimb stylopod

Changes for: zygomatic arch

• Added
  • + zygomatic arch database cross reference EMAPA:36570

Changes for: dorsum of tongue

• Deleted
  • - dorsum of tongue SubClassOf ectoderm-derived structure

Changes for: umbilical blood vessel

• Added
  • + umbilical blood vessel database cross reference EMAPA:36493

Changes for: perineal muscle

• Added
  • + perineal muscle database cross reference EMAPA:36629

Changes for: Brodmann (1909) area 9

• Added
  • + Brodmann (1909) area 9 SubClassOf part of some dorsolateral prefrontal cortex

Changes for: fibrous pericardium

• Deleted
  • - fibrous pericardium structure notes most superficial part of pericardium; continuous with the outer adventitial layer of the neighboring great blood vessels. [Wikipedia:Fibrous_pericardium]
• Added
  • + fibrous pericardium SubClassOf continuous with some parietal serous pericardium
  • + fibrous pericardium structure notes most superficial part of pericardium; continuous with the outer adventitial layer of the neighboring great blood vessels. [Wikipedia:Pericardium]

Changes for: perineum

• Added
  • + perineum database cross reference EMAPA:36628

Changes for: serous pericardium

• Deleted
  • - serous pericardium definition Serous membrane which is divided into parietal and visceral pericardium. { database cross reference=http://en.wikipedia.org/wiki/Serous_pericardium , database cross reference=http://orcid.org/0000-0002-6601-2165 }
• Added
  • + serous pericardium definition Serous membrane which is divided into parietal and visceral serous pericardium. { database cross reference=http://en.wikipedia.org/wiki/Serous_pericardium , database cross reference=http://orcid.org/0000-0002-6601-2165 }

Changes for: peritoneum

• Deleted
  • - peritoneum SubClassOf located in some abdominal cavity
• Added
  • + peritoneum EquivalentTo serous membrane and part of some peritoneal sac
  • + peritoneum SubClassOf part of some peritoneal sac
  • + peritoneum database cross reference MA:0000449
  • + peritoneum external ontology notes todo: check MA/EMAPA. { external ontology=MA }

Changes for: otocyst lumen

• Deleted
  • - otocyst lumen EquivalentTo anatomical cavity and part of some ear vesicle
  • - otocyst lumen SubClassOf part of some ear vesicle
• Added
  • + otocyst lumen EquivalentTo anatomical cavity and luminal space of some ear vesicle
  • + otocyst lumen SubClassOf luminal space of some ear vesicle

Changes for: choroid plexus epithelium

• Added
  • + choroid plexus epithelium database cross reference EMAPA:36608

Changes for: caudalipuboischiotibialis

• Deleted
  • - caudalipuboischiotibialis SubClassOf muscle organ
• Added
  • + caudalipuboischiotibialis SubClassOf skeletal muscle organ

Changes for: nasal mucus

• Added
  • + nasal mucus database cross reference EMAPA:36552

Changes for: nucleus K of ventral tegmentum

• Deleted
  • - nucleus K of ventral tegmentum SubClassOf ventral tegmental nucleus
• Added
  • + nucleus K of ventral tegmentum SubClassOf brainstem nucleus
  • + nucleus K of ventral tegmentum SubClassOf midbrain nucleus

Changes for: nucleus H of ventral tegmentum

• Deleted
  • - nucleus H of ventral tegmentum SubClassOf ventral tegmental nucleus
• Added
  • + nucleus H of ventral tegmentum SubClassOf brainstem nucleus
  • + nucleus H of ventral tegmentum SubClassOf midbrain nucleus

Changes for: epicardium

• Deleted
  • - epicardium SubClassOf heart layer
  • - epicardium SubClassOf serous membrane
  • - epicardium definition a serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart. { database cross reference=http://orcid.org/0000-0002-6601-2165 }
  • - epicardium has exact synonym visceral serous pericardium of heart
  • - epicardium has related synonym lamina visceralis pericardii serosi { database cross reference=http://en.wikipedia.org/wiki/Epicardium , has synonym type=latin term }
• Added
  • + epicardium SubClassOf mesoderm-derived structure
  • + epicardium SubClassOf multi-tissue structure
  • + epicardium definition a region of the serous membrane that forms the innermost layer of the pericardium and the outer surface of the heart. { database cross reference=http://orcid.org/0000-0002-6601-2165 }
  • + epicardium has exact synonym visceral serous pericardium of heart { database cross reference=FMA:9461 }

Changes for: coelemic cavity lumen

• Deleted
  • - coelemic cavity lumen SubClassOf body cavity or lining
  • - coelemic cavity lumen SubClassOf develops from some body cavity precursor
  • - coelemic cavity lumen database cross reference MA:0002447
  • - coelemic cavity lumen has narrow synonym ventral body cavity
  • - coelemic cavity lumen has related synonym body cavity { database cross reference=BTO:0001707 }
• Added
  • + coelemic cavity lumen SubClassOf luminal space of some coelom
  • + coelemic cavity lumen SubClassOf transformation of some future coelemic cavity lumen
  • + coelemic cavity lumen has broad synonym body cavity { database cross reference=BTO:0001707 }
  • + coelemic cavity lumen has exact synonym main body cavity
  • + coelemic cavity lumen has narrow synonym ventral body cavity { database cross reference=NCBITaxon:7742 }

Changes for: median lingual swelling epithelium

• Deleted
  • - median lingual swelling epithelium SubClassOf ecto-epithelium

Changes for: mesenchyme of sublingual gland primordium

• Deleted
  • - mesenchyme of sublingual gland primordium SubClassOf ectoderm-derived structure

Changes for: lateral lingual swelling epithelium

• Deleted
  • - lateral lingual swelling epithelium SubClassOf ecto-epithelium

Changes for: intraembryonic coelom

• Deleted
  • - intraembryonic coelom SubClassOf body cavity precursor
  • - intraembryonic coelom definition the part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom { database cross reference=MGI:anna , database cross reference=MP:0012187 }
• Added
  • + intraembryonic coelom SubClassOf embryonic structure
  • + intraembryonic coelom SubClassOf mesoderm-derived structure
  • + intraembryonic coelom SubClassOf part of some coelom
  • + intraembryonic coelom definition The part of the coelom in the embryo between the somatopleuric and splanchnopleuric mesoderm; the principal body cavities of the trunk (thoracic, abdominal, and pelvic) arise from this embryonic part of the coelom { database cross reference=MGI:anna , database cross reference=MP:0012187 }

Changes for: future coelemic cavity lumen

• Deleted
  • - body cavity precursor label body cavity precursor
• Added
  • + future coelemic cavity lumen SubClassOf existence ends during some organogenesis stage
  • + future coelemic cavity lumen SubClassOf existence starts during some gastrula stage
  • + future coelemic cavity lumen has related synonym body cavity precursor
  • + future coelemic cavity lumen label future coelemic cavity lumen

Changes for: extraembryonic coelomic cavity

• Deleted
  • - extraembryonic coelom SubClassOf body cavity precursor
  • - extraembryonic coelom label extraembryonic coelom
• Added
  • + extraembryonic coelomic cavity SubClassOf anatomical space
  • + extraembryonic coelomic cavity SubClassOf develops from some future coelemic cavity lumen
  • + extraembryonic coelomic cavity has related synonym extraembryonic celom { database cross reference=FMA:63943 }
  • + extraembryonic coelomic cavity label extraembryonic coelomic cavity

Changes for: coat of hair

• Added
  • + coat of hair database cross reference EMAPA:36485

Changes for: abductor hallucis muscle

• Deleted
  • - abductor hallucis muscle SubClassOf muscle organ
• Added
  • + abductor hallucis muscle SubClassOf muscle of pes

Changes for: abductor pollicis brevis muscle

• Added
  • + abductor pollicis brevis muscle SubClassOf muscle of manus

Changes for: sputum

• Added
  • + sputum database cross reference EMAPA:36553

Changes for: ceratoglossus

• Deleted
  • - ceratoglossus SubClassOf ectoderm-derived structure

Changes for: flexor pollicis longus muscle

• Deleted
  • - flexor pollicis longus muscle definition A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. This muscle is unique to humans, being ‘either rudimentary or absent’ in other primates. { database cross reference=http://en.wikipedia.org/wiki/Flexor_pollicis_longus_muscle }
• Added
  • + flexor pollicis longus muscle SubClassOf part of some forelimb zeugopod
  • + flexor pollicis longus muscle definition A muscle in the forearm and hand that flexes the thumb. It lies in the same plane as the flexor digitorum profundus. { database cross reference=http://en.wikipedia.org/wiki/Flexor_pollicis_longus_muscle }

Changes for: future diencephalon

• Deleted
  • - future diencephalon definition A multi-tissue structure that has the potential to develop into a diencephalon. { database cross reference=OBOL:automatic }
• Added
  • + future diencephalon definition The foremost region of the future forebrain that develops into the diencephalon. { database cross reference=https://en.wikipedia.org/wiki/Diencephalon , database cross reference=UBERON:cjm }

Changes for: longitudinal hypochordal

• Deleted
  • - longitudinal hypochordal SubClassOf muscle organ
• Added
  • + longitudinal hypochordal SubClassOf skeletal muscle organ

Changes for: infraorbital 1

• Deleted
  • - infraorbital 1 definition Infraorbital that is the first (anteriormost) bone of the infraorbital series. { database cross reference=ZFIN:curator }
• Added
  • + infraorbital 1 definition Infraorbital in fishes that is the first (anteriormost) bone of the infraorbital series. { database cross reference=ZFIN:curator }

Changes for: lateral ethmoid bone

• Deleted
  • - lateral ethmoid bone has exact synonym parethmo�de { database cross reference=PSPUB:0000141 }
  • - lateral ethmoid bone has exact synonym pleurethmo�de { database cross reference=PSPUB:0000134 }
  • - lateral ethmoid bone has exact synonym �thmo�de lat�ral { database cross reference=PSPUB:0000164 }
• Added
  • + lateral ethmoid bone has exact synonym parethmoïde { database cross reference=PSPUB:0000141 }
  • + lateral ethmoid bone has exact synonym pleurethmoïde { database cross reference=PSPUB:0000134 }
  • + lateral ethmoid bone has exact synonym éthmoïde latéral { database cross reference=PSPUB:0000164 }

Changes for: lingual swellings

• Deleted
  • - lingual swellings SubClassOf ectoderm-derived structure

Changes for: infracarinalis

• Deleted
  • - infracarinalis SubClassOf mesoderm-derived structure
  • - infracarinalis SubClassOf muscle organ
  • - infracarinalis SubClassOf trunk region element
• Added
  • + infracarinalis SubClassOf skeletal muscle of trunk

Changes for: supracarinalis

• Deleted
  • - supracarinalis SubClassOf mesoderm-derived structure
  • - supracarinalis SubClassOf muscle organ
  • - supracarinalis SubClassOf trunk region element
• Added
  • + supracarinalis SubClassOf skeletal muscle of trunk

Changes for: superficial lateralis (teleost)

• Deleted
  • - superficial lateralis SubClassOf mesoderm-derived structure
  • - superficial lateralis SubClassOf muscle organ
  • - superficial lateralis SubClassOf trunk region element
  • - superficial lateralis label superficial lateralis
• Added
  • + superficial lateralis (teleost) SubClassOf skeletal muscle of trunk
  • + superficial lateralis (teleost) label superficial lateralis (teleost)

Changes for: rib pre-cartilage condensation

• Deleted
  • - rib pre-cartilage condensation SubClassOf mesoderm-derived structure

Changes for: rib cartilage element

• Deleted
  • - rib cartilage element SubClassOf mesoderm-derived structure

Changes for: epicentral bone

• Deleted
  • - epicentral bone has exact synonym di�pipleural { database cross reference=PSPUB:0000131 }
• Added
  • + epicentral bone has exact synonym diépipleural { database cross reference=PSPUB:0000131 }

Changes for: lingual tonsil

• Deleted
  • - lingual tonsil SubClassOf ectoderm-derived structure

Changes for: Brodmann (1909) area 24

• Deleted
  • - Brodmann (1909) area 24 SubClassOf part of some cerebral cortex
  • - Brodmann (1909) area 24 definition . { database cross reference=NIFSTD:birnlex_1755 }
• Added
  • + Brodmann (1909) area 24 SubClassOf part of some anterior cingulate cortex
  • + Brodmann (1909) area 24 definition . { database cross reference=https://github.com/obophenotype/uberon/issues/1161 , database cross reference=NIFSTD:birnlex_1755 }

Changes for: epaxialis

• Deleted
  • - epaxialis SubClassOf mesoderm-derived structure
  • - epaxialis SubClassOf muscle organ
  • - epaxialis SubClassOf trunk region element
• Added
  • + epaxialis SubClassOf skeletal muscle of trunk

Changes for: hair follicle placode

• Added
  • + hair follicle placode database cross reference EMAPA:36479

Changes for: hypaxialis

• Deleted
  • - hypaxialis SubClassOf mesoderm-derived structure
  • - hypaxialis SubClassOf muscle organ
  • - hypaxialis SubClassOf trunk region element
• Added
  • + hypaxialis SubClassOf skeletal muscle of trunk

Changes for: gill raker

• Deleted
  • - gill raker has exact synonym branchioct�nie { database cross reference=PSPUB:0000133 }
• Added
  • + gill raker has exact synonym branchiocténie { database cross reference=PSPUB:0000133 }

Changes for: epipleural

• Deleted
  • - epipleural has exact synonym pleuro�de { database cross reference=PSPUB:0000153 }
  • - epipleural has exact synonym �pipleural { database cross reference=PSPUB:0000164 }
  • - epipleural has exact synonym �pipleure { database cross reference=PSPUB:0000133 }
• Added
  • + epipleural has exact synonym pleuroïde { database cross reference=PSPUB:0000153 }
  • + epipleural has exact synonym épipleural { database cross reference=PSPUB:0000164 }
  • + epipleural has exact synonym épipleure { database cross reference=PSPUB:0000133 }

Changes for: baroreceptor

• Added
  • + baroreceptor database cross reference EMAPA:36597

Changes for: serosa of infundibulum of uterine tube

• Deleted
  • - serosa of infundibulum of uterine tube SubClassOf heart layer

Changes for: branchiostegal ray

• Added
  • + branchiostegal ray SubClassOf part of some gill membrane

Changes for: superficial pelvic abductor

• Added
  • + superficial pelvic abductor SubClassOf pelvic appendage muscle

Changes for: postcleithrum

• Deleted
  • - postcleithrum has exact synonym m�tacleithrum { database cross reference=PSPUB:0000131 }
  • - postcleithrum has exact synonym m�taclithrum { database cross reference=PSPUB:0000131 }
• Added
  • + postcleithrum has exact synonym métacleithrum { database cross reference=PSPUB:0000131 }
  • + postcleithrum has exact synonym métaclithrum { database cross reference=PSPUB:0000131 }

Changes for: proepicardium

• Deleted
  • - proepicardium definition An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary] { database cross reference=http://en.wiktionary.org/wiki/proepicardium , database cross reference=GO:0003342 }
• Added
  • + proepicardium definition An embryonic group of progenitor cells that forms from an outpouching of the septum transversum near the venous pole of the heart and gives rise to the epicardium { database cross reference=http://en.wiktionary.org/wiki/proepicardium , database cross reference=GO:0003342 }

Changes for: dorsal arrector

• Added
  • + dorsal arrector SubClassOf pectoral appendage muscle

Changes for: coracoradialis

• Deleted
  • - coracoradialis SubClassOf muscle organ
• Added
  • + coracoradialis SubClassOf pectoral appendage muscle

Changes for: urethra smooth muscle layer

• Deleted
  • - urethra smooth muscle layer has exact synonym involuntary muscle of urethra { database cross reference=OBOL:automatic }
  • - urethra smooth muscle layer has exact synonym non-striated muscle of urethra { database cross reference=OBOL:automatic }
  • - urethra smooth muscle layer has exact synonym urethra involuntary muscle { database cross reference=OBOL:automatic }
  • - urethra smooth muscle layer has exact synonym urethra non-striated muscle { database cross reference=OBOL:automatic }
• Added
  • + urethra smooth muscle layer database cross reference EMAPA:36630

Changes for: mentalis muscle

• Deleted
  • - mentalis muscle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: skin of body

• Deleted
  • - skin of body definition Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body.[FMA]. { database cross reference=FMA:7163 }
  • - skin of body external ontology notes Note that FMA uses ‘skin’ for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin { external ontology=FMA }
• Added
  • + skin of body definition The organ covering the body that consists of the dermis and epidermis. { database cross reference=UBERON:cjm }
  • + skin of body external ontology notes MA uses the term skin to refer to what is called here: zone of skin { external ontology=FMA }

Changes for: viscus

• Added
  • + viscus database cross reference EMAPA:16245

Changes for: hair shaft

• Added
  • + hair shaft database cross reference EMAPA:36498

Changes for: interradialis

• Deleted
  • - interradialis SubClassOf muscle organ
• Added
  • + interradialis SubClassOf skeletal muscle organ

Changes for: intermuscular bone

• Deleted
  • - intermuscular bone has exact synonym m�tamyoste { database cross reference=PSPUB:0000147 }
  • - intermuscular bone has exact synonym m�taxymyoste { database cross reference=PSPUB:0000153 }
• Added
  • + intermuscular bone has exact synonym métamyoste { database cross reference=PSPUB:0000147 }
  • + intermuscular bone has exact synonym métaxymyoste { database cross reference=PSPUB:0000153 }

Changes for: chin ventral margin

• Deleted
  • - chin ventral margin SubClassOf ectoderm-derived structure

Changes for: labial commissure

• Deleted
  • - labial commissure SubClassOf ectoderm-derived structure

Changes for: tongue intermolar eminence

• Deleted
  • - tongue intermolar eminence SubClassOf ectoderm-derived structure

Changes for: supracleithrum

• Deleted
  • - supracleithrum has exact synonym �piclithrum { database cross reference=PSPUB:0000132 }
• Added
  • + supracleithrum has exact synonym épiclithrum { database cross reference=PSPUB:0000132 }

Changes for: communicating artery

• Added
  • + communicating artery SubClassOf artery

Changes for: ventral ectodermal ridge

• Added
  • + ventral ectodermal ridge database cross reference EMAPA:36491

Changes for: pelvic abductor profundus

• Added
  • + pelvic abductor profundus SubClassOf pelvic appendage muscle

Changes for: nipple

• Added
  • + nipple database cross reference EMAPA:36508

Changes for: outflow tract pericardium

• Deleted
  • - outflow tract pericardium SubClassOf heart layer
  • - outflow tract pericardium SubClassOf meso-epithelium
• Added
  • + outflow tract pericardium SubClassOf mesoderm-derived structure

Changes for: joint of rib

• Added
  • + joint of rib SubClassOf mesoderm-derived structure

Changes for: mammary gland alveolus

• Added
  • + mammary gland alveolus database cross reference EMAPA:36566

Changes for: epithelium of lower jaw

• Deleted
  • - epithelium of lower jaw SubClassOf ecto-epithelium

Changes for: vitelline blood vessel

• Added
  • + vitelline blood vessel database cross reference EMAPA:36494

Changes for: serous fluid

• Deleted
  • - serous fluid EquivalentTo transduate and located in some serous sac
  • - serous fluid SubClassOf transduate
  • - serous fluid definition Transudate contained in a serous sac. { database cross reference=FMA:20932 }
• Added
  • + serous fluid EquivalentTo bodily fluid and located in some serous sac and produced by some serous gland
  • + serous fluid SubClassOf bodily fluid
  • + serous fluid SubClassOf bodily secretion
  • + serous fluid SubClassOf produced by some serous gland
  • + serous fluid database cross reference http://en.wikipedia.org/wiki/Serous_fluid
  • + serous fluid definition Any fluid produced by a serous gland. { database cross reference=UBERON:cjm }
  • + serous fluid external ontology notes the FMA def is Transudate contained in a serous sac { external ontology=FMA }
  • + serous fluid has exact synonym serous gland fluid

Changes for: zygote stage

• Added
  • + zygote stage database cross reference EMAPA:16033

Changes for: oral opening

• Deleted
  • - oral opening SubClassOf ectoderm-derived structure

Changes for: mouth

• Deleted
  • - mouth SubClassOf develops from some stomodeum
  • - mouth SubClassOf ectodermal part of digestive tract
• Added
  • + mouth SubClassOf develops from some future mouth
  • + mouth SubClassOf subdivision of digestive tract

Changes for: bone of reproductive organ

• Deleted
  • - bone of reproductive structure EquivalentTo bone element and part of some reproductive structure
  • - bone of reproductive structure SubClassOf part of some reproductive structure
  • - bone of reproductive structure definition A bone that is part of a reproductive structure. { database cross reference=OBOL:automatic }
  • - bone of reproductive structure label bone of reproductive structure
• Added
  • + bone of reproductive organ EquivalentTo bone element and part of some reproductive organ
  • + bone of reproductive organ SubClassOf part of some reproductive organ
  • + bone of reproductive organ definition A bone that is part of a reproductive organ. { database cross reference=https://github.com/obophenotype/uberon/issues/1158 , database cross reference=OBOL:automatic }
  • + bone of reproductive organ label bone of reproductive organ

Changes for: anal canal epithelium

• Added
  • + anal canal epithelium database cross reference EMAPA:18835

Changes for: muscle tissue of terminal part of digestive tract

• Deleted
  • - muscle of terminal part of digestive tract EquivalentTo muscle structure and part of some terminal part of digestive tract
  • - muscle of terminal part of digestive tract SubClassOf muscle structure
  • - muscle of terminal part of digestive tract definition Any muscle structure of the distalmost portion of the digestive tract. { database cross reference=http://orcid.org/0000-0002-6601-2165 }
  • - muscle of terminal part of digestive tract label muscle of terminal part of digestive tract
• Added
  • + muscle tissue of terminal part of digestive tract EquivalentTo muscle tissue and part of some terminal part of digestive tract
  • + muscle tissue of terminal part of digestive tract SubClassOf muscle tissue
  • + muscle tissue of terminal part of digestive tract definition Any muscle tissue of the distalmost portion of the digestive tract. { database cross reference=http://orcid.org/0000-0002-6601-2165 }
  • + muscle tissue of terminal part of digestive tract label muscle tissue of terminal part of digestive tract

Changes for: mesentery of heart

• Deleted
  • - mesentery of heart SubClassOf heart layer

Changes for: hemal spine

• Deleted
  • - hemal spine has exact synonym h�macanthe { database cross reference=PSPUB:0000143 }
  • - hemal spine has exact synonym �pine h�male { database cross reference=PSPUB:0000164 }
• Added
  • + hemal spine has exact synonym hémacanthe { database cross reference=PSPUB:0000143 }
  • + hemal spine has exact synonym épine hémale { database cross reference=PSPUB:0000164 }

Changes for: mesentery of stomach

• Deleted
  • - mesentery of stomach SubClassOf stomach region

Changes for: presphenoid bone

• Added
  • + presphenoid bone database cross reference EMAPA:36616

Changes for: duct of epididymis

• Added
  • + duct of epididymis database cross reference EMAPA:36525

Changes for: pulmonary surfactant

• Added
  • + pulmonary surfactant database cross reference EMAPA:36551

Changes for: epithelium of duct of salivary gland

• Added
  • + epithelium of duct of salivary gland SubClassOf ecto-epithelium

Changes for: epithelium of tongue

• Deleted
  • - epithelium of tongue SubClassOf ecto-epithelium

Changes for: mesenchyme of lower jaw

• Deleted
  • - mesenchyme of lower jaw SubClassOf ectoderm-derived structure

Changes for: musculature of perineum

• Added
  • + musculature of perineum database cross reference EMAPA:36629

Changes for: obsolete body cavity or lining

• Deleted
  • - body cavity or lining EquivalentTo coelemic cavity lumen or cavity lining
  • - body cavity or lining SubClassOf anatomical entity
  • - body cavity or lining curator notes See notes for ‘cavity lining’
  • - body cavity or lining database cross reference EMAPA:16060
  • - body cavity or lining database cross reference MA:0000005
  • - body cavity or lining editor note this class may be merged into ‘serous sac’
  • - body cavity or lining label body cavity or lining
• Added
  • + obsolete body cavity or lining deprecated true
  • + obsolete body cavity or lining label obsolete body cavity or lining
  • + obsolete body cavity or lining term replaced by UBERON:0005906

Changes for: obsolete cavity lining

• Deleted
  • - cavity lining SubClassOf body cavity or lining
  • - cavity lining SubClassOf organ component layer
  • - cavity lining database cross reference MA:0002448
  • - cavity lining editor note consider merging with serous membrane
  • - cavity lining external ontology notes in MA this groups pericardium, pleura and periotoneal cavity lining { external ontology=MA }
  • - cavity lining label cavity lining
• Added
  • + obsolete cavity lining deprecated true
  • + obsolete cavity lining external ontology notes This class was originally created to mirror the MA class of the same name; in MA this groups pericardium, pleura and periotoneal cavity lining and is better represented using concepts like serous membrane { external ontology=MA }
  • + obsolete cavity lining label obsolete cavity lining
  • + obsolete cavity lining term replaced by UBERON:0000042

Changes for: tibial artery

• Added
  • + tibial artery database cross reference EMAPA:36530

Changes for: synovial cavity of joint

• Deleted
  • - synovial cavity of joint EquivalentTo anatomical cavity and part of some synovial joint
  • - synovial cavity of joint SubClassOf part of some synovial joint
• Added
  • + synovial cavity of joint EquivalentTo anatomical cavity and luminal space of some synovial joint
  • + synovial cavity of joint SubClassOf luminal space of some synovial joint

Changes for: right kidney

• Added
  • + right kidney database cross reference EMAPA:36590

Changes for: left kidney

• Added
  • + left kidney database cross reference EMAPA:36589

Changes for: stria medullaris

• Added
  • + stria medullaris database cross reference EMAPA:36607

Changes for: actinotrichium

• Deleted
  • - actinotrichium comment Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): ‘Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; G�raudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (G�raudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (G�raudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).’
• Added
  • + actinotrichium comment Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): ‘Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; Géraudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (Géraudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (Géraudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).’

Changes for: pre-Botzinger complex

• Added
  • + pre-Botzinger complex database cross reference EMAPA:36557

Changes for: obsolete anal fin

• Deleted
  • - obsolete anal fin has exact synonym proctopt�re { database cross reference=PSPUB:0000136 }
  • - obsolete anal fin has exact synonym proctopt�rygie { database cross reference=PAPUB:0000142 , database cross reference=PSPUB:0000140 }
• Added
  • + obsolete anal fin has exact synonym proctoptère { database cross reference=PSPUB:0000136 }
  • + obsolete anal fin has exact synonym proctoptérygie { database cross reference=PAPUB:0000142 , database cross reference=PSPUB:0000140 }

Changes for: ventral intermandibularis anterior

• Deleted
  • - ventral intermandibularis anterior SubClassOf muscle organ
• Added
  • + ventral intermandibularis anterior SubClassOf skeletal muscle organ

Changes for: Peyer’s patch epithelium

• Added
  • + Peyer’s patch epithelium database cross reference EMAPA:36506

Changes for: bulbourethral gland secretion

• Added
  • + bulbourethral gland secretion database cross reference EMAPA:36544

Changes for: venous system smooth muscle

• Added
  • + venous system smooth muscle database cross reference EMAPA:36613

Changes for: arterial system smooth muscle

• Added
  • + arterial system smooth muscle database cross reference EMAPA:36503

Changes for: mandible condylar process

• Added
  • + mandible condylar process database cross reference EMAPA:36572

Changes for: serous membrane

• Deleted
  • - serous membrane SubClassOf cavity lining
• Added
  • + serous membrane SubClassOf multi-tissue structure

Changes for: ventral intermandibularis posterior

• Deleted
  • - ventral intermandibularis posterior SubClassOf muscle organ
• Added
  • + ventral intermandibularis posterior SubClassOf skeletal muscle organ

Changes for: levator auris longus muscle

• Added
  • + levator auris longus muscle database cross reference EMAPA:36627

Changes for: macula lutea

• Added
  • + macula lutea database cross reference EMAPA:36516

Changes for: vena cava sinus

• Deleted
  • - vena cava sinus SubClassOf cavity of right atrium
• Added
  • + vena cava sinus SubClassOf anatomical cavity

Changes for: insect labrum

• Deleted
  • - insect labrum SubClassOf ectoderm-derived structure

Changes for: serous sac

• Added
  • + serous sac database cross reference EMAPA:16060
  • + serous sac database cross reference MA:0000005

Changes for: nerve innervating pinna

• Added
  • + nerve innervating pinna database cross reference EMAPA:36513

Changes for: fibular nerve

• Added
  • + fibular nerve database cross reference EMAPA:36511

Changes for: ala of nose

• Deleted
  • - ala of nose definition The lateral surface of the external nose ends below in a rounded eminence, the wing of the nose. It is elevated by the Levator labii superioris alaeque nasi muscle[WP]. the tissue comprising the lateral boundary of the nose, inferiorly, surrounding the naris[EoM]. { database cross reference=http://en.wikipedia.org/wiki/Ala_of_nose , database cross reference=http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full }
• Added
  • + ala of nose definition The lateral surface parts of the external nose, inferiorly, surrounding the naris[EoM]. { database cross reference=http://en.wikipedia.org/wiki/Ala_of_nose , database cross reference=http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.32600/full }

Changes for: mandibular process mesenchyme

• Deleted
  • - mandibular process mesenchyme SubClassOf ectoderm-derived structure

Changes for: lip epithelium

• Deleted
  • - lip epithelium SubClassOf ecto-epithelium

Changes for: coelomic epithelium

• Deleted
  • - coelomic epithelium SubClassOf embryonic tissue

Changes for: gonad germinal epithelium

• Deleted
  • - gonad germinal epithelium SubClassOf embryonic tissue

Changes for: camptotrichium

• Deleted
  • - camptotrichium comment From Witten & Huysseune (2007): ‘Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G�raudie and Meunier 1982).’
  • - camptotrichium definition Fin ray found in dipnoans that are composed of a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G�raudie and Meunier 1982) { database cross reference=PHENOSCAPE:pm , database cross reference=http://purl.obolibrary.org/obo/uberon/tracker/129 }
• Added
  • + camptotrichium comment From Witten & Huysseune (2007): ‘Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (Géraudie and Meunier 1982).’
  • + camptotrichium definition Fin ray found in dipnoans that are composed of a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (Géraudie and Meunier 1982) { database cross reference=PHENOSCAPE:pm , database cross reference=http://purl.obolibrary.org/obo/uberon/tracker/129 }

Changes for: tongue muscle

• Deleted
  • - tongue muscle SubClassOf ectoderm-derived structure

Changes for: ulnar sesamoid bone

• Added
  • + ulnar sesamoid bone database cross reference EMAPA:36621

Changes for: dermal papilla

• Added
  • + dermal papilla database cross reference EMAPA:36484

Changes for: caudal fin

• Deleted
  • - caudal fin has exact synonym uropt�re { database cross reference=PSPUB:0000135 }
  • - caudal fin has exact synonym uropt�rygie { database cross reference=PSPUB:0000140 }
• Added
  • + caudal fin has exact synonym uroptère { database cross reference=PSPUB:0000135 }
  • + caudal fin has exact synonym uroptérygie { database cross reference=PSPUB:0000140 }

Changes for: median fin

• Deleted
  • - median fin has exact synonym p�rissopt�rygie { database cross reference=PSPUB:0000140 }
• Added
  • + median fin has exact synonym périssoptérygie { database cross reference=PSPUB:0000140 }

Changes for: anal fin

• Deleted
  • - anal fin has exact synonym proctopt�re { database cross reference=PSPUB:0000136 }
  • - anal fin has exact synonym proctopt�rygie { database cross reference=PAPUB:0000142 , database cross reference=PSPUB:0000140 }
• Added
  • + anal fin has exact synonym proctoptère { database cross reference=PSPUB:0000136 }
  • + anal fin has exact synonym proctoptérygie { database cross reference=PAPUB:0000142 , database cross reference=PSPUB:0000140 }

Changes for: peritoneal mesentery

• Deleted
  • - peritoneal mesentery definition A double layer composed of peritoneum that attaches the visceral organs to the body wall. { database cross reference=ZFIN:curator }
• Added
  • + peritoneal mesentery SubClassOf peritoneum
  • + peritoneal mesentery definition Mesentery that is located in the peritoneum. { database cross reference=UBERON:cjm }

Changes for: bodily secretion

• Added
  • + bodily secretion database cross reference EMAPA:36535

Changes for: ventral mesogastrium

• Deleted
  • - ventral mesogastrium SubClassOf part of some mesentery of stomach
  • - ventral mesogastrium database cross reference http://en.wikipedia.org/wiki/Ventral_mesentery
  • - ventral mesogastrium definition Ventral mesentery is the part of the peritoneum closest to the navel. { database cross reference=http://en.wikipedia.org/wiki/Ventral_mesentery }
  • - ventral mesogastrium has related synonym ventral mesentery { database cross reference=http://en.wikipedia.org/wiki/Ventral_mesentery }
• Added
  • + ventral mesogastrium definition Portion of ventral mesentery closest to the stomach. { database cross reference=http://en.wikipedia.org/wiki/Ventral_mesentery }
  • + ventral mesogastrium has related synonym foregut ventral mesentery { database cross reference=http://en.wikipedia.org/wiki/Ventral_mesentery }

Changes for: secondary palatal shelf epithelium

• Added
  • + secondary palatal shelf epithelium SubClassOf ecto-epithelium

Changes for: primary palate epithelium

• Added
  • + primary palate epithelium SubClassOf ecto-epithelium

Changes for: peritoneal cavity mesothelium

• Added
  • + peritoneal cavity mesothelium external ontology notes we believe that this corresponds to EMAPA:16139 based on synonyms and parenthood { external ontology=EMAPA }
  • + peritoneal cavity mesothelium has broad synonym peritoneum { database cross reference=EMAPA:16139 , has synonym type=indicates that a synonym is used in an inconsistent or confusing way, typically between species }
  • + peritoneal cavity mesothelium has exact synonym peritoneal mesothelium { database cross reference=EMAPA:16139 }

Changes for: foramen cecum of tongue

• Deleted
  • - foramen cecum of tongue SubClassOf ectoderm-derived structure

Changes for: dorsal pelvic arrector

• Added
  • + dorsal pelvic arrector SubClassOf pelvic appendage muscle

Changes for: epural

• Deleted
  • - epural has exact synonym epiural apophysis { database cross reference=TAO:0000660 }
  • - epural has exact synonym �phural { database cross reference=PSPUB:0000138 }
  • - epural has exact synonym �pural { database cross reference=PSPUB:0000164 }
• Added
  • + epural has exact synonym epiural apophysis { database cross reference=TAO:0000660 }
  • + epural has exact synonym éphural { database cross reference=PSPUB:0000138 }
  • + epural has exact synonym épural { database cross reference=PSPUB:0000164 }

Changes for: superficial abductor

• Added
  • + superficial abductor SubClassOf pectoral appendage muscle

Changes for: sublingual caruncle

• Deleted
  • - sublingual caruncle SubClassOf ectoderm-derived structure

Changes for: mandibular symphysis

• Deleted
  • - mandibular symphysis SubClassOf ectoderm-derived structure

Changes for: alveolar canal

• Deleted
  • - alveolar canal SubClassOf ectoderm-derived structure

Changes for: abductor profundus

• Added
  • + abductor profundus SubClassOf pectoral appendage muscle

Changes for: jaw epithelium

• Deleted
  • - jaw epithelium SubClassOf ecto-epithelium

Changes for: abdominal oblique muscle

• Added
  • + abdominal oblique muscle SubClassOf part of some anterior abdominal wall
  • + abdominal oblique muscle definition Either the external or internal abdominal oblique muscles { database cross reference=UBERON:cjm }

Changes for: lower back

• Added
  • + lower back database cross reference EMAPA:36623

Changes for: otolymph

• Added
  • + otolymph database cross reference EMAPA:36547

Changes for: ventral arrector

• Added
  • + ventral arrector SubClassOf pectoral appendage muscle

Changes for: interosseous muscle of autopod

• Deleted
  • - interosseous muscle of autopod SubClassOf muscle organ
  • - interosseous muscle of autopod SubClassOf part of some autopod region
• Added
  • + interosseous muscle of autopod SubClassOf limb muscle
  • + interosseous muscle of autopod SubClassOf part of some metapodium region

Changes for: ventral pelvic arrector

• Added
  • + ventral pelvic arrector SubClassOf pelvic appendage muscle

Changes for: gingival epithelial attachment

• Deleted
  • - gingival epithelial attachment SubClassOf ectoderm-derived structure

Changes for: male reproductive system fluid/secretion

• Added
  • + male reproductive system fluid/secretion database cross reference EMAPA:36541

Changes for: respiratory system fluid/secretion

• Added
  • + respiratory system fluid/secretion database cross reference EMAPA:36550

Changes for: seminal fluid

• Added
  • + seminal fluid database cross reference EMAPA:36543

Changes for: mammary gland fluid/secretion

• Added
  • + mammary gland fluid/secretion database cross reference EMAPA:36538

Changes for: aortic sac

• Added
  • + aortic sac database cross reference EMAPA:36461

Changes for: greater sac cavity

• Deleted
  • - greater sac cavity database cross reference http://en.wikipedia.org/wiki/Greater_sac

Changes for: abdominal internal oblique muscle

• Deleted
  • - abdominal internal oblique muscle definition The internal oblique muscle (of the abdomen) is the intermediate muscle of the abdomen, lying just underneath the external oblique and just above (superficial to) the transverse abdominal muscle. { database cross reference=http://en.wikipedia.org/wiki/Abdominal_internal_oblique_muscle }
• Added
  • + abdominal internal oblique muscle EquivalentTo skeletal muscle organ and part of some anterior abdominal wall and immediately deep to some abdominal external oblique muscle and immediately superficial to some transversus abdominis muscle
  • + abdominal internal oblique muscle SubClassOf immediately deep to some abdominal external oblique muscle
  • + abdominal internal oblique muscle SubClassOf immediately superficial to some transversus abdominis muscle
  • + abdominal internal oblique muscle SubClassOf part of some anterior abdominal wall
  • + abdominal internal oblique muscle definition The lateral abdominal wall muscle that is deep to the external oblique and superficial to the transversus. { database cross reference=ISBN:9781435464339 , database cross reference=UBERON:cjm }

Changes for: intrinsic muscle

• Deleted
  • - intrinsic muscle SubClassOf muscle organ
• Added
  • + intrinsic muscle SubClassOf skeletal muscle organ

Changes for: greater sac

• Deleted
  • - greater sac SubClassOf mesoderm-derived structure
  • - greater sac SubClassOf part of some peritoneum
• Added
  • + greater sac SubClassOf part of some peritoneal sac
  • + greater sac database cross reference http://en.wikipedia.org/wiki/Greater_sac

Changes for: abdominal external oblique muscle

• Deleted
  • - abdominal external oblique muscle SubClassOf develops from some external oblique pre-muscle mass
  • - abdominal external oblique muscle definition The external oblique muscle (of the abdomen) (also external abdominal oblique muscle) is the largest and the most superficial (outermost) of the three flat muscles of the lateral anterior abdomen. { database cross reference=http://en.wikipedia.org/wiki/Abdominal_external_oblique_muscle }
• Added
  • + abdominal external oblique muscle EquivalentTo skeletal muscle organ and part of some anterior abdominal wall and immediately superficial to some abdominal internal oblique muscle
  • + abdominal external oblique muscle SubClassOf immediately superficial to some abdominal internal oblique muscle
  • + abdominal external oblique muscle SubClassOf part of some anterior abdominal wall
  • + abdominal external oblique muscle SubClassOf transformation of some external oblique pre-muscle mass
  • + abdominal external oblique muscle definition The lateral abdominal wall muscle that is the most superficial, immediately superficial to the internal oblique. { database cross reference=ISBN:9781435464339 , database cross reference=UBERON:cjm }

Changes for: perirenal fat

• Added
  • + perirenal fat database cross reference EMAPA:36495

Changes for: philtrum

• Deleted
  • - philtrum SubClassOf ectoderm-derived structure

Changes for: ventral striatum

• Added
  • + ventral striatum database cross reference EMAPA:36576

Changes for: dorsal striatum

• Added
  • + dorsal striatum database cross reference EMAPA:36575

Changes for: diaphysis proper

• Deleted
  • - diaphysis proper comment The MA class is placed here because we assume it means diaphysis proper, because in MA epiphysis is not part of MA:0002803
  • - diaphysis proper database cross reference EMAPA:35505
• Added
  • + diaphysis proper external ontology notes The MA class is associated with EMAPA:35505 but we associate this with the more precise concept of diaphyseal plate { external ontology=MA }

Changes for: abductor muscle

• Deleted
  • - abductor muscle SubClassOf composed primarily of some skeletal muscle tissue
  • - abductor muscle SubClassOf muscle organ
• Added
  • + abductor muscle SubClassOf skeletal muscle organ

Changes for: oral lamina propria

• Deleted
  • - oral lamina propria SubClassOf ectoderm-derived structure

Changes for: pilosebaceous unit

• Added
  • + pilosebaceous unit database cross reference EMAPA:36582

Changes for: bulbus cordis myocardium

• Added
  • + bulbus cordis myocardium database cross reference EMAPA:36488

Changes for: vibrissa outer root sheath

• Added
  • + vibrissa outer root sheath database cross reference EMAPA:36478

Changes for: vibrissa inner root sheath

• Added
  • + vibrissa inner root sheath database cross reference EMAPA:36477

Changes for: stomatodeum gland

• Added
  • + stomatodeum gland editor note check this

Changes for: peritubular capillary

• Added
  • + peritubular capillary database cross reference EMAPA:36558

Changes for: costotransverse joint

• Deleted
  • - costotransverse joint SubClassOf mesoderm-derived structure

Changes for: coelom

• Deleted
  • - coelom SubClassOf embryonic structure
  • - coelom SubClassOf part of some embryo
  • - coelom definition The structure that contains the coelemic cavity. { database cross reference=http://en.wikipedia.org/wiki/Body_cavity , database cross reference=http://en.wikipedia.org/wiki/Coelom }
• Added
  • + coelom definition The aggregate of the coelemic cavity lumen plus the membranes that line the lumen. { database cross reference=http://en.wikipedia.org/wiki/Body_cavity , database cross reference=http://en.wikipedia.org/wiki/Coelom , database cross reference=UBERON:cjm }
  • + coelom has narrow synonym enterocoelom { database cross reference=NCBITaxon:33511 }
  • + coelom has narrow synonym haemocoelom
  • + coelom has narrow synonym schizocoelom

Changes for: anterior communicating artery

• Added
  • + anterior communicating artery SubClassOf branch of anterior cerebral artery

Changes for: stomodeum

• Deleted
  • - stomodeum SubClassOf part of some presumptive gut
• Added
  • + stomodeum SubClassOf part of some future mouth

Changes for: alisphenoid bone

• Added
  • + alisphenoid bone database cross reference EMAPA:36567

Changes for: endoderm

• Deleted
  • - endoderm has related synonym entoderm
• Added
  • + endoderm has related synonym entoderm { database cross reference=http://dx.doi.org/10.5962/bhl.title.1013 , has synonym type=A historic synonym, no longer encouraged }

Changes for: hypural musculature

• Deleted
  • - hypural musculature SubClassOf muscle organ
• Added
  • + hypural musculature SubClassOf skeletal muscle organ

Changes for: pleura

• Deleted
  • - pleura EquivalentTo serous membrane and part of some pleural sac
  • - pleura SubClassOf surrounds some pleural cavity
  • - pleura definition the serous membrane surrounding the lungs and lining the walls of the pleural cavity { database cross reference=ISBN:0-683-40008-8 , database cross reference=MP:0010820 }
  • - pleura external ontology notes In MA, is_a cavity lining. In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term ‘pleura’ is best used for the mesothelial lining (thus excluding connective tissue). See https://github.com/obophenotype/uberon/issues/86
  • - pleura has related synonym pleural tissue { database cross reference=BTO:0001791 }
• Added
  • + pleura EquivalentTo serous membrane and part of some pleural sac and has part some parietal pleura and has part some visceral pleura
  • + pleura SubClassOf develops from some lateral plate mesoderm
  • + pleura SubClassOf has part some parietal pleura
  • + pleura SubClassOf has part some visceral pleura
  • + pleura definition The invaginated serous membrane that surrounds the lungs (the visceral portion) and lines the walls of the pleural cavity (parietal portion). { database cross reference=https://en.wikipedia.org/wiki/Pulmonary_pleurae , database cross reference=ISBN:0-683-40008-8 , database cross reference=MP:0010820 , database cross reference=UBERON:cjm }
  • + pleura external ontology notes In MA, is_a cavity lining (which we equate to parietal). In FMA, is_a (viscous) serous membrane (which includes mesothelium plus connective tissue). Note the MA structure should probably be associated with the mesothelium of pleura in FMA. JB/EHDAA2 argues the term ‘pleura’ is best used for the mesothelial lining (thus excluding connective tissue). See https://github.com/obophenotype/uberon/issues/86
  • + pleura has related synonym pleural tissue { database cross reference=C12469 , database cross reference=BTO:0001791 }

Changes for: choroid plexus stroma

• Added
  • + choroid plexus stroma database cross reference EMAPA:36609

Changes for: mammalian vulva

• Added
  • + mammalian vulva database cross reference EMAPA:36631

Changes for: thoracic mammary gland

• Added
  • + thoracic mammary gland database cross reference EMAPA:36633

Changes for: trachea gland

• Added
  • + trachea gland database cross reference EMAPA:36574

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 0