2014-12-09 release

Refactoring of ocular glands, incorporation of new CARO classes, and various improvements in reproductive, skeletal and integumental branches
2014-12-09 release image

Summary

This release sees improvements in the representation of the so-called ocular glands. These have previously been the subject of confusion, especially distinction between Harderian and nictitans glands (both of which are associated with the nictitating membrane). Uberon previously followed the BTO scheme of classifying the Harderian as a lacrimal gland - this has been modified, and the two are now disjoint (although they most likely share a common phylogenetic origin). We also made general improvements to the lacrimal system (pictured). The Mammalian Phenotype (MP) ontology developers did most of the groundwork here (but note the representation in Uberon works for all tetrapods in which these glands are present).

Various new requests for new neuroanatomical classes or synonyms prompted a review of cell layers, and improvement on the CUMBO definition, and alignment with the cell layer category from Neurolex. Integration with Allen atlases is ongoing. The next release will see a switch to a new ID scheme.

The NSF Phenotype RCN sponsored a meeting to create a new version of CARO. Some classes from the pre-release have been incorporated in. More details coming soon.

The Phenoscape project added multiple new classes in the skeletal system.

Ontology Diff Report

  • reproductive system
    • endometrium refactor
    • Fixes to ovarian follicle, subtypes and layers.
    • NT: mesentery of ileum
    • NT: placenta blood vessel
    • NT: reproductive system fluid/secretion.
  • development
    • Using anlage/field as genus for all developmental fields
    • NT: lung field
    • additional classes and synonyms to align with GO development hierarchy
  • neuro
    • NTs for nlx cell layers
    • updating NIFSTD/nlx xrefs and metadata, rewiring away from broken pages to replacements
    • Requests from Russ Poldrack and Trish Whetzel
    • pineal recess. MGI:cs. Fixes issue 613
    • multiple Allen xref related commits and NTs
  • ocular glands issue 614
    • lacrimal, harderian and nictitans glands changes
    • medial ocular gland additions based on ISBN:1118473523 and comments from Cindy and Ann.
    • NT tear film
    • Adopting Siskai scheme for classification based on composition of flid
    • Using PMID:7559104.
  • CARO/upper
    • NT: integumental surface. Issue issue 617
    • NT: morphological boundary (CARO)
    • NT: anatomical boundary (CARO)
    • Added notes to organ. See https://github.com/obophenotype/caro/issues/4
    • Added notes on possible obsoletion of anatomical cluster - See https://github.com/obophenotype/caro/issues/3
    • changing lung alveolar systems to be system parts
    • Added note that anatomical group may be obsoleted. See https://github.com/obophenotype/caro/issues/2
  • integument
    • minor changes to hair
    • NT: integumental system gland. Fixes issue 612
    • skin gland syns
  • External AOs
    • FMA alignment. Capitalizing liberkuhn
    • mp alignment; lacrimal X
    • additional alignment. Issue issue 609
    • Aligning syns with xao, zfa, bto, fma, ma
    • Sourcing defs from MP
    • minor changes to arthro-specific classes
  • Skeletal system and ext
    • reclassifying ceratobranchials II-IV as ceratobranchial series
    • reclassifying astragulaus-calcaneum unit as subdivision of skeleton
    • reclassifying pit organ as a organ
    • reclassifying os basale as a bone
    • Added parasymphysial plate, lateral parasymphysial foramen, mesial parasymphysial foramen, anterior supraorbital. PHENOSCAPE:ad
    • added median postrostral bone, postrostral bone, fronto-ethmoidal shield and shagreen tooth field. PHENOSCAPE:ad
    • added coronoid fang, posterior coronoid bone and anterior coronoid bone. PHENOSCAPE:ad
    • added posterior stalk and posterior stem of interclavicle as exact synonyms for parasternal procress. Added the terms pre and post coronoid bone. PHENOSCAPE:ad
  • Other

Original Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-11-01/uberon.owl

New Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-12-09/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 128

New Class : outer layer of endometrium

New Class : basal layer of endometrium

New Class : posterior cingulate cortex

New Class : medial orbital frontal cortex

New Class : parietal serous membrane

New Class : visceral serous membrane

New Class : mesentery of ileum

New Class : placenta blood vessel

New Class : lung field

New Class : male mammary gland duct

New Class : corticopontine fibers

New Class : nucleus of pudendal nerve

New Class : strand of hair on external ear

New Class : splenic flexure of colon

New Class : hepatic flexure of colon

New Class : lacrimal papilla

New Class : colic flexure

New Class : corticobulbar tract

New Class : lacrimal lake

New Class : epithelium of crypt of Lieberkuhn of small intestine

New Class : epithelium of crypt of Lieberkuhn of large intestine

New Class : secretion of Harderian gland

New Class : tear film

New Class : surface of eyeball

New Class : pineal recess of third ventricle

New Class : lacrimal gland bud

New Class : strand of tylotrich hair

New Class : secretion of nictitans gland

New Class : splenic arteriole

New Class : reproductive system fluid/secretion

New Class : inferior palpebral branch of infra-orbital nerve

New Class : palpebral branch of infra-orbital nerve

New Class : morphological boundary

New Class : integumental surface

New Class : lower eyelid nerve

New Class : upper eyelid nerve

New Class : peduncle of thalamus

New Class : anterior thalamic peduncle

New Class : peduncle of diencephalon

New Class : medial longitudinal stria

New Class : secondary visual cortex

New Class : retrohippocampal region

New Class : forebrain ipsilateral fiber tracts

New Class : cerebral nerve fasciculus

New Class : anterior orbital gyrus

New Class : posterior thalamic peduncle

New Class : superior longitudinal fasciculus

New Class : inferior thalamic peduncle

New Class : superior thalamic peduncle

New Class : endolemniscal nucleus

New Class : radiation of neuraxis

New Class : precentral sulcus

New Class : subcallosal fasciculus

New Class : subthalamic fasciculus

New Class : ventral thalamic fasciculus

New Class : auditory radiation

New Class : optic radiation

New Class : planum temporale

New Class : radiation of cerebral hemisphere

New Class : entorhinal cortex layer 4

New Class : dorsal cochlear nucleus pyramidal cell layer

New Class : entorhinal cortex layer 3

New Class : molecular layer of dorsal cochlear nucleus

New Class : entorhinal cortex layer 5

New Class : entorhinal cortex layer 6

New Class : superior colliculus stratum zonale

New Class : primary motor cortex layer 6

New Class : primary motor cortex layer 5

New Class : olfactory cortex layer 2

New Class : olfactory cortex layer 1

New Class : lateral geniculate nucleus parvocellular layer

New Class : piriform cortex layer 2a

New Class : piriform cortex layer 2b

New Class : dentate gyrus granule cell layer outer blade

New Class : dentate gyrus granule cell layer inner blade

New Class : dentate gyrus molecular layer inner

New Class : dentate gyrus molecular layer middle

New Class : entorhinal cortex layer 1

New Class : entorhinal cortex layer 2

New Class : long ciliary nerve

New Class : nasociliary nerve

New Class : short ciliary nerve

New Class : nervous system cell part layer

New Class : posterior amygdaloid nucleus

New Class : meibum

New Class : epifascicular nucleus

New Class : exocrine gland of integumental system

New Class : root of olfactory nerve

New Class : ventrolateral nucleus of solitary tract

New Class : glossopharyngeal nerve root

New Class : occipital sulcus

New Class : sensory organ epithelium

New Class : nose epithelium

New Class : epithelium of external nose

New Class : septohypothalamic nucleus

New Class : palpebral lobe of lacrimal gland

New Class : intraorbital lacrimal gland

New Class : exorbital lacrimal gland

New Class : lobe of lacrimal gland

New Class : orbital lobe of lacrimal gland

New Class : precordial region

New Class : commissure of telencephalon

New Class : caudal intralaminar nuclear group

New Class : accessory olfactory bulb external plexiform layer

New Class : rhombomere 10

New Class : rhombomere 11

New Class : rhombomere 9

New Class : white matter of pontine tegmentum

New Class : white matter of pons

New Class : white matter of metencephalon

New Class : accessory olfactory bulb internal plexiform layer

New Class : postcoronoid bone

New Class : precoronoid bone

New Class : posterior coronoid bone

New Class : anterior coronoid bone

New Class : shagreen tooth field

New Class : coronoid fang

New Class : lateral parasymphysial foramen

New Class : mesial parasymphysial foramen

New Class : parasymphysial plate

New Class : fronto-ethmoidal shield

New Class : surangular pit line

New Class : anterior supraorbital bone

New Class : postrostral bone

New Class : median postrostral bone

New Class : bona-fide anatomical boundary

New Class : auricular blood vessel

New Class : accessory XI nerve nucleus

Changed Class objects: 772

Changes for: base of crypt of Lieberkuhn of large intestine

Changes for: wall of crypt of Lieberkuhn

Changes for: base of crypt of Lieberkuhn of small intestine

Changes for: wall of crypt of Lieberkuhn of large intestine

Changes for: wall of crypt of Lieberkuhn of small intestine

Changes for: base of crypt of Lieberkuhn

Changes for: lumen of esophagus

Changes for: anatomical conduit space

Changes for: jaw region

Changes for: cervical cavity

Changes for: upper jaw opening

Changes for: lower jaw opening

Changes for: manual digit 5 plus metapodial segment

Changes for: manual digit 4 plus metapodial segment

Changes for: manual digit 3 plus metapodial segment

Changes for: manual digit 2 plus metapodial segment

Changes for: pedal digit 5 plus metapodial segment

Changes for: pedal digit 4 plus metapodial segment

Changes for: pedal digit 1 plus metapodial segment

Changes for: pedal digit 3 plus metapodial segment

Changes for: pedal digit 2 plus metapodial segment

Changes for: pedal digit plus metapodial segment

Changes for: manual digit 1 plus metapodial segment

Changes for: lumen of atrioventricular canal

Changes for: acinus of lacrimal gland

Changes for: mesorchium

Changes for: left pelvic girdle region

Changes for: right pelvic girdle region

Changes for: flexor hallucis brevis muscle

Changes for: flexor pollicis brevis muscle

Changes for: mammary gland

Changes for: epithelium of crypt of Lieberkuhn

Changes for: habenula

Changes for: ventral lateral nucleus

Changes for: Verson’s gland

Changes for: adductor muscle of hip

Changes for: Ammon’s horn

Changes for: medial habenular nucleus

Changes for: lamina propria of esophagus

Changes for: iliopsoas

Changes for: reticular layer of dermis

Changes for: papillary layer of dermis

Changes for: crypt of Lieberkuhn of large intestine

Changes for: central nervous system cell part cluster

Changes for: root of vagus nerve

Changes for: lumen of hemipenial sheath

Changes for: gland of Zeis

Changes for: lacrimal gland

Changes for: tarsal gland

Changes for: conjunctiva

Changes for: pedal acropodium region

Changes for: acropodium region

Changes for: manual acropodium region

Changes for: urachal lumen

Changes for: perianal skin

Changes for: metencephalon

Changes for: rhombomere

Changes for: midbrain

Changes for: appendicular skeletal system

Changes for: island of Calleja

Changes for: medial septal nucleus

  • Deleted
    • - medial septal nucleus external definition A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies[BTO:0002446, Dorlands_Medical_Dictionary:MerckSource]. { source=BTO:0002446, Dorlands_Medical_Dictionary:MerckSource }
  • Added
    • + medial septal nucleus external definition A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies. { source=BTO:0002446 }

Changes for: fibrous membrane of synovial tendon sheath

Changes for: sebum

  • Deleted
    • - sebum function notes sebum produced by tarsal glands prevents evaporation of the eye’s tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight[WP]

Changes for: lacrimal drainage system

Changes for: semicircular canal

Changes for: femoral gland

Changes for: nasal cartilage

Changes for: sebaceous gland

Changes for: sweat gland

Changes for: secretion of lacrimal gland

Changes for: mucosa of larynx

Changes for: outer nuclear layer of retina

Changes for: pigmented layer of retina

Changes for: inner plexiform layer of retina

Changes for: ganglionic layer of retina

Changes for: nerve fiber layer of retina

Changes for: outer plexiform layer of retina

Changes for: inner nuclear layer of retina

Changes for: oviduct mucosal fold

Changes for: ceratobranchials II–IV

Changes for: cloacal epithelium

Changes for: infra-orbital nerve

Changes for: posterior superior alveolar nerve

Changes for: cloacal lumen

Changes for: lumen of terminal part of digestive tract

Changes for: lacrimal apparatus

Changes for: lacrimal canaliculus

Changes for: mammary duct

Changes for: eyelid

Changes for: lower jaw region

Changes for: oculomotor nuclear complex

Changes for: spinal nucleus of trigeminal nerve

Changes for: upper jaw region

Changes for: pudendal nerve

Changes for: neurocranium

Changes for: cavity of pharynx

Changes for: tibialis posterior

Changes for: orbit of skull

Changes for: epithelium of gonad

Changes for: lumen of intestine

Changes for: anterior nucleus of hypothalamus

Changes for: oculomotor nerve root

Changes for: superior medullary velum

Changes for: posterior parahippocampal gyrus

Changes for: accessory olfactory bulb granule cell layer

Changes for: lower part of vagina

Changes for: facial muscle

Changes for: os basale

Changes for: temporalis muscle

Changes for: extrastriate cortex

Changes for: non-connected functional system

Changes for: sinusoidal space

Changes for: prostate bud

Changes for: hindlimb zeugopod

Changes for: forelimb stylopod

Changes for: vestibular nerve

Changes for: lingual nerve

Changes for: basal nucleus of telencephalon

Changes for: sphincter pupillae

Changes for: dilatator pupillae

Changes for: auricular artery

Changes for: cortical arch of kidney

Changes for: acoustico-facial VII-VIII ganglion complex

Changes for: ampullary gland

Changes for: alveolar wall

Changes for: trochlear nerve

Changes for: abducens nerve

Changes for: network of trabecular spaces in bone tissue

Changes for: cardiovascular system endothelium

Changes for: mammillary peduncle

Changes for: paraaortic lymph node

Changes for: vestibulocochlear nerve root

Changes for: medial dorsal nucleus of thalamus

Changes for: intralaminar nuclear group

Changes for: lateral nuclear group of thalamus

Changes for: lamina of septum pellucidum

Changes for: endometrium epithelium

Changes for: rectal lumen

Changes for: kidney epithelium

Changes for: lacrimal gland epithelium

Changes for: pulmonary alveolus epithelium

Changes for: embryonic cloacal lumen

Changes for: lumen of nutrient foramen

Changes for: pedal digitopodium region

Changes for: manual digitopodium region

Changes for: digitopodium region

Changes for: prehallux

Changes for: oviduct epithelium

Changes for: renal venous blood vessel

Changes for: amiculum of dentate nucleus

Changes for: superior precentral sulcus

Changes for: neuraxis cavity

Changes for: cranial placode

Changes for: paired fin

Changes for: submandibular lymph node

Changes for: corpus luteum

Changes for: distal tarsal bone 1

Changes for: distal tarsal bone 3

Changes for: distal tarsal bone 2

Changes for: cuboid bone

Changes for: precentral fissure of cerebellum

Changes for: rib skeletal system

Changes for: carpal bone

Changes for: pectoral girdle region

Changes for: cardiac ganglion

Changes for: ascending aorta

Changes for: placental cotyledon

Changes for: deltoid

Changes for: infraspinatus muscle

Changes for: paracentral sulcus

Changes for: principal sensory nucleus of trigeminal nerve

Changes for: ventral posterior nucleus of thalamus

Changes for: pedal digit 5

Changes for: perianal sebaceous gland

Changes for: endometrium glandular epithelium

Changes for: visceral yolk sac cavity

Changes for: abductor pollicis longus

Changes for: flexor digitorum profundus

Changes for: skin mucous gland

Changes for: pronator teres

Changes for: metacarpal bone of digit 5

Changes for: metacarpal bone of digit 4

Changes for: metacarpal bone of digit 3

Changes for: metacarpal bone of digit 2

Changes for: biceps brachii

Changes for: triceps brachii

Changes for: stomodeal lumen

Changes for: kidney arterial blood vessel

Changes for: metacarpal bone of digit 1

Changes for: larynx submucosa

Changes for: posterior nasal aperture

Changes for: metatarsal bone of digit 4

Changes for: kidney pelvis urothelium

Changes for: metatarsal bone of digit 5

Changes for: respiratory system mucosa

Changes for: metatarsal bone of digit 1

Changes for: metatarsal bone of digit 2

Changes for: metatarsal bone of digit 3

Changes for: root of trochlear nerve

Changes for: triangular part of inferior frontal gyrus

Changes for: orbital part of inferior frontal gyrus

Changes for: pectoral appendage

Changes for: piriform cortex

Changes for: cochlear nerve

Changes for: cervical mucosa

Changes for: cervical gland

Changes for: thyroid follicular lumen

Changes for: male urethral meatus

Changes for: urinary bladder vasculature

Changes for: paired limb/fin

Changes for: pelvic appendage

Changes for: dorsal thalamus

Changes for: white matter of midbrain

Changes for: lamina of gray matter of spinal cord

Changes for: cortical amygdaloid nucleus

Changes for: gastrocnemius

Changes for: fibularis longus

Changes for: soleus muscle

Changes for: tibialis anterior

Changes for: central nervous system gray matter layer

Changes for: central nervous system white matter layer

Changes for: pit organ

Changes for: lacrimal sac

Changes for: biceps femoris

Changes for: semitendinosus

Changes for: rectus femoris

Changes for: gluteus maximus

Changes for: iliacus muscle

Changes for: cavity of right ventricle

Changes for: stomach fundus lumen

Changes for: ovarian follicle

Changes for: cumulus oophorus

Changes for: germinal epithelium of ovary

Changes for: vagus X nerve trunk

Changes for: cavum septum pellucidum

Changes for: prostate field

Changes for: urogenital sinus lumen

Changes for: metapodium region

Changes for: tarsal skeleton

Changes for: secondary heart field

Changes for: lung blood vessel

Changes for: lunate sulcus

Changes for: intralingual sulcus

Changes for: main bronchus blood vessel

Changes for: posterior calcarine sulcus

Changes for: transverse occipital sulcus

Changes for: anterior occipital sulcus

Changes for: dentate gyrus polymorphic layer

Changes for: trapezoid body

Changes for: tectopontine tract

Changes for: ventral posteromedial nucleus of thalamus

Changes for: intermediate acoustic stria

Changes for: rostral intralaminar nuclear group

Changes for: adductor pollicis muscle

Changes for: preolivary nucleus

Changes for: larynx connective tissue

Changes for: anconeus muscle

Changes for: bronchus connective tissue

Changes for: main bronchus connective tissue

Changes for: lateral dorsal nucleus

Changes for: opercular part of inferior frontal gyrus

Changes for: medial superior olivary nucleus

Changes for: decussation of trochlear nerve

Changes for: root of abducens nerve

Changes for: ventral nuclear group

Changes for: anterior transverse temporal gyrus

Changes for: lateral superior olivary nucleus

Changes for: inferior precentral sulcus

Changes for: anterior cingulate gyrus

Changes for: penicillar arteriole

Changes for: endometrium

Changes for: proximal convoluted tubule

Changes for: strand of wool

Changes for: ischium

Changes for: ilium

Changes for: pelvic girdle region

Changes for: lumbar spinal cord

Changes for: dorsal acoustic stria

Changes for: trigone of urinary bladder

Changes for: muscularis mucosae of intestine

Changes for: crypt of Lieberkuhn of small intestine

Changes for: lunge feeding vibrissa

Changes for: anus

Changes for: collecting duct of renal tubule

Changes for: adrenal gland X zone

Changes for: Peyer’s patch

Changes for: sulcus of brain

Changes for: rostral root of abducens nerve

Changes for: root of optic nerve

Changes for: caudal root of abducens nerve

Changes for: helicine branch of uterine artery

Changes for: helicine artery of penis

Changes for: uterine spiral artery

Changes for: lumen of Rathke’s pouch

Changes for: helicine artery

Changes for: iris nerve

Changes for: eyelid nerve

Changes for: medial gland of ocular region

Changes for: lateral gland of orbital region

Changes for: lumen of oropharynx

Changes for: Harderian gland duct

Changes for: gland of ocular region

Changes for: bladder lumen

Changes for: ophthalmotemporal branch of external ophthalmic artery

Changes for: conjunctival space

Changes for: lumen of primary bronchus

Changes for: bronchial lumen

Changes for: lumen of tertiary bronchus

Changes for: lumen of secondary bronchus

Changes for: lumen of parabronchus

Changes for: pinna hair

Changes for: mesenchyme of submandibular gland

Changes for: nodosal placode

Changes for: vestibulocochlear ganglion

Changes for: vestibular ganglion

Changes for: heart blood vessel

Changes for: diffuse reticular nucleus

Changes for: small intestine Peyer’s patch

Changes for: Grueneberg ganglion

Changes for: nictitans gland

Changes for: latissimus dorsi muscle

Changes for: left lobe of liver

Changes for: right lobe of liver

Changes for: spinal cord

Changes for: serratus dorsalis superior muscle

Changes for: serratus ventralis

Changes for: serratus dorsalis inferior muscle

Changes for: olfactory tract

Changes for: parathyroid gland

Changes for: bare area of liver

Changes for: mammillary body

Changes for: vermiform appendix

Changes for: gustatory nucleus

Changes for: right crus of diaphragm

Changes for: nerve root

  • Deleted
    • - nerve root external ontology notes this ontology enforces strict part-disjointness between the CNS and PNS which poses challenges for modeling roots of nerves in a way that is consistent with other ontologies. Sometimes the root may be modeled as being entirely part of the brain or spinal cord, in other cases, part of the (peripheral) nerve. We make nerve root continuous_with nerve to avoid inconsistencies. FMA has segment of nerve with subtypes: segment of sympathetic trunk, nerve root, nerve rootlet, nerve root proper { external ontology=FMA }
  • Added
    • + nerve root database cross reference FMA:82524
    • + nerve root external ontology notes this ontology enforces strict part-disjointness between the CNS and PNS which poses challenges for modeling roots of nerves in a way that is consistent with other ontologies. Sometimes the root may be modeled as being entirely part of the brain or spinal cord, in other cases, part of the (peripheral) nerve. We make nerve root continuous_with nerve to avoid inconsistencies. FMA has segment of nerve with subtypes: segment of sympathetic trunk, nerve root, nerve rootlet, nerve root proper. FMA also has ‘central zone of nerve’ which is the parent of cranial nerve tracts { external ontology=FMA }

Changes for: P3 area of pallium (Myxiniformes)

Changes for: P2 area of pallium (Myxiniformes)

Changes for: P5 area of pallium (Myxiniformes)

Changes for: P4 area of pallium (Myxiniformes)

Changes for: strand of guard hair

Changes for: principal inferior olivary nucleus

Changes for: distal segment of rib

Changes for: gigantocellular nucleus

  • Deleted
    • - gigantocellular nucleus definition The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Gigantocellular_nucleus }
    • - gigantocellular nucleus editor note This class was created automatically from a combination of ontologies
  • Added

Changes for: middle cerebellar peduncle

Changes for: interpositus nucleus

Changes for: atrioventricular valve

Changes for: nerve fasciculus

Changes for: esophagus

Changes for: pole of lens

Changes for: primordium

Changes for: corpus cardiacum

Changes for: arthropod neurohemal organ

Changes for: limb

Changes for: Malpighian tubule

Changes for: hindlimb

Changes for: forelimb

Changes for: corpus allatum

Changes for: eye surface region

Changes for: spleen central arteriole

Changes for: brainstem white matter

Changes for: intersomitic vessel

Changes for: lumen of urethra

Changes for: proximal segment of rib

Changes for: lumen of laryngopharynx

Changes for: pelvic cavity

Changes for: adenohypophysis

Changes for: cranial cavity

Changes for: stylopod

Changes for: intercerebral commissure

Changes for: autopod region

Changes for: zeugopod

Changes for: uterine artery

Changes for: nictitating membrane lamina

Changes for: glossopharyngeal-vagus IX-X preganglion complex

Changes for: white matter lamina of cerebellum

Changes for: parietal pleura

Changes for: visceral pleura

Changes for: white matter lamina of cerebral hemisphere

Changes for: white matter lamina of neuraxis

Changes for: white matter lamina of diencephalon

Changes for: parietal serous pericardium

Changes for: pericardium

Changes for: pericardial sac

Changes for: layer of hippocampal field

Changes for: basal ganglion

Changes for: visceral serous pericardium

Changes for: striatum

Changes for: lens fiber

Changes for: inferior cervical ganglion

Changes for: lenticular fasciculus

Changes for: endometrial gland

Changes for: decidua

Changes for: internal thoracic artery

Changes for: hamstring muscle

Changes for: mesocardium

Changes for: glossopharyngeal-vagus IX-X ganglion complex

Changes for: lacrimal punctum

Changes for: muscle of abdomen

Changes for: trapezius muscle

Changes for: forelimb zeugopod

Changes for: pes

Changes for: pancreas primordium

Changes for: dorsal pancreatic bud

Changes for: fibrous pericardium

Changes for: serous pericardium

Changes for: atrioventricular node

Changes for: atrioventricular bundle

Changes for: stomach lumen

Changes for: bulbo-urethral gland

Changes for: nictitating membrane

Changes for: manus

Changes for: nasolacrimal duct

Changes for: pharyngotympanic tube

Changes for: Brodmann (1909) area 43

Changes for: temporal sulcus

Changes for: astragalus-calcaneum unit

Changes for: layer of neocortex

Changes for: layer of hippocampus

Changes for: layer of dentate gyrus

Changes for: endometrial stroma

Changes for: lamina propria of bronchus

Changes for: neural crest

Changes for: frontal sulcus

Changes for: epicardium

Changes for: hippocampus fimbria

Changes for: white matter of cerebellum

Changes for: accessory nerve root

Changes for: pleuroperitoneal canal lumen

Changes for: median lingual swelling epithelium

Changes for: mesenchyme of submandibular gland primordium

Changes for: associated mesenchyme of main bronchus

Changes for: lumen of central canal of spinal cord

Changes for: sesamoid cartilage

Changes for: lumen of lymphatic vessel

Changes for: lumen of blood vessel

Changes for: fasciculus aberans

Changes for: paraurethral gland

Changes for: psoas muscle

Changes for: abductor pollicis brevis muscle

Changes for: mammary ridge

Changes for: flexor pollicis longus muscle

Changes for: diencephalic part of interventricular foramen

Changes for: carpus cartilage element

Changes for: rhombic lip

Changes for: carpus pre-cartilage condensation

Changes for: cervical sinus of His

Changes for: glossopharyngeal IX preganglion

Changes for: humerus cartilage element

Changes for: humerus pre-cartilage condensation

Changes for: facio-acoustic VII-VIII preganglion complex

Changes for: femur pre-cartilage condensation

Changes for: male genital tubercle

Changes for: nasolacrimal groove

Changes for: infundibular recess of 3rd ventricle

Changes for: ischial cartilage element

Changes for: lens pit

Changes for: pubic pre-cartilage condensation

Changes for: granulosa cell layer

Changes for: multi cell part structure

Changes for: submandibular gland primordium

Changes for: metanephric cap

Changes for: lateral entorhinal cortex

Changes for: 4 cell stage

Changes for: 2 cell stage

Changes for: 8 cell stage

Changes for: ventrolateral sulcus of medulla oblongata

Changes for: tarsal gland acinus

Changes for: olfactory bulb layer

Changes for: dorsal accessory inferior olivary nucleus

Changes for: cochlear canal

Changes for: joint space of elbow

Changes for: muscle structure

Changes for: superior colliculus superficial gray layer

Changes for: dorsal nerve cord

Changes for: hemolymphoid system gland

Changes for: rectal diverticulum

Changes for: cerebellum vermis lobule III

Changes for: cerebellum vermis lobule IV

Changes for: cerebellum vermis lobule IX

Changes for: cerebellum vermis lobule V

Changes for: cerebellum vermis lobule VI

Changes for: accessory olfactory bulb

Changes for: tympanic cavity

Changes for: anatomical conduit

Changes for: optic vesicle

Changes for: chorionic villus

Changes for: lumen of hindgut

Changes for: lumen of midgut

Changes for: lumen of colon

Changes for: lumen of anal canal

Changes for: short head of biceps brachii

Changes for: long head of biceps brachii

Changes for: pericardial visceral mesothelium

Changes for: pericardial parietal mesothelium

Changes for: mesothelium of serous pericardium

Changes for: chordo neural hinge

Changes for: hadjikhani et al. (1998) visuotopic area V2d

Changes for: Brodmann (1909) area 18

Changes for: dorsal pes interosseous muscle

Changes for: annulus fibrosus

Changes for: olfactory bulb mitral cell layer

Changes for: Harderian gland

Changes for: labyrinthine layer blood vessel

Changes for: primary heart field

Changes for: cerebellar layer

Changes for: cardiogenic plate

Changes for: orbitofrontal cortex

Changes for: pelvic adductor profundus

Changes for: bronchus smooth muscle

Changes for: intestine smooth muscle

Changes for: urinary bladder smooth muscle

Changes for: cardiac septum

Changes for: lateral crico-arytenoid

Changes for: posterior crico-arytenoid

Changes for: viscus

Changes for: atrioventricular canal

Changes for: heart right ventricle

Changes for: vagal X nerve trunk

Changes for: future trigeminal ganglion

Changes for: gluteus minimus

Changes for: collection of hair on external ear

Changes for: Zymbal’s gland

Changes for: strand of vibrissa hair

Changes for: ureteric bud tip

Changes for: superficial pelvic adductor

Changes for: heel

Changes for: brainstem nucleus

Changes for: distal early tubule

Changes for: forebrain ventricular layer

Changes for: cerebellum

Changes for: stratum basale of epidermis

Changes for: occipital lobe

Changes for: gray matter

Changes for: skin muscle

Changes for: trabecular network of bone

Changes for: epithelium of mammary gland

Changes for: ectoplacental cavity

Changes for: amniotic mesoderm

Changes for: neural lobe of neurohypophysis

Changes for: pharyngeal gill precursor

Changes for: fin

Changes for: extensor pollicis longus muscle

Changes for: ear epithelium

Changes for: flexor digitorum superficialis

Changes for: supinator muscle

Changes for: medial preoptic region

Changes for: apical ectodermal ridge

Changes for: liver blood vessel

Changes for: obsolete subparabrachial nucleus

Changes for: cranial or facial muscle