/releases/2014-04-10/uberon

Chris Mungall

/releases/2014-04-10/uberon

Commencing pharyngeal arch improvements. Improved mammalian alignments. Multiple nervous system improvements

Overview

alignment
- addition of terms from latest EMAPA/FMA alignment
upper
- reclassifying ‘organ parts’ as more specific
- new rel: contributes to morphology of
  - Added contributes_to_morphology_of relations by abduction from MP/HP
- added logical defs using output_of for substances
- made vestibulococchlear system parallel division by function: i.e. VC = V+C
nervous system
- lamina of gray matter of spinal cord - layers i-X
- white matter, grey matter and tracts patterns applied consistently
- sulci and gyri all have correct superclass
- cranial nerve fixes
- added taxon constraints for XI and XII
- phrenic nerve: added relationships
pharyngeal arches
- pharyngeal definitions
- PA def fixes. ZFA:yb - Fixes issue #415
muscoluoskeletal
- NT: epicondyle of humerus (grouping)
- NT: Added ‘parasphenoid flange’ [NI]
- NTs for palmaris longus and its tendon. Addresses #414
- NT: foramen spinosum
- notes on taxon constr for limbs
- split vertebral centrum into cartil. and bony subclasses. Addresses issue #382
other
- NTs: posterior and anterior fornix of vagina
- added image for gastric mucosa
- NTs: dental plaques and subtypes parietal cortex

Ontology Diff Report

Original Ontology

IRI: http://purl.obolibrary.org/obo/uberon.owl
VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-03-28/uberon.owl

New Ontology

IRI: http://purl.obolibrary.org/obo/uberon.owl
VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-04-10/uberon.owl

Report for classes

Class objects lost from source: 4

Class objects new in target: 77

New Class : dental plaque

dental plaque id UBERON:0016482
dental plaque has related synonym plaque { database cross reference=UBERON:cjm }
dental plaque database cross reference http://en.wikipedia.org/wiki/Dental_plaque
dental plaque definition A soft, thin film of food debris, mucin, and dead epithelial cells deposited on the teeth, providing the medium for the growth of various bacteria. The main inorganic components are calcium and phosphorus, with small amounts of magnesium, potassium, and sodium; the organic matrix consists of polysaccharides, proteins, carbohydrates, lipids, and other components. Plaque plays an important etiologic role in the development of dental caries and periodontal and gingival diseases and provides the base for the development of materia alba; calcified plaque forms dental calculus. { database cross reference=BTO:0000338 , database cross reference=Dorlands_Medical_Dictionary:MerckSource }
dental plaque has related synonym bacterial plaque { database cross reference=BTO:0000338 }
dental plaque SubClassOf adjacent to some calcareous tooth
dental plaque database cross reference MESH:A12.300.300
dental plaque label dental plaque
dental plaque database cross reference BTO:0000338
dental plaque has obo namespace uberon
dental plaque SubClassOf portion of organism substance
dental plaque SubClassOf part of some mouth

New Class : superficial cerebral vein

superficial cerebral vein has obo namespace uberon
superficial cerebral vein id UBERON:0016559
superficial cerebral vein label superficial cerebral vein
superficial cerebral vein database cross reference FMA:50982
superficial cerebral vein has exact synonym cortical cerebral vein { database cross reference=FMA:50982 }
superficial cerebral vein SubClassOf cerebral vein

New Class : stria of telencephalon

stria of telencephalon has obo namespace uberon
stria of telencephalon EquivalentTo stria of neuraxis and part of some telencephalon
stria of telencephalon id UBERON:0016555
stria of telencephalon label stria of telencephalon
stria of telencephalon has exact synonym telencephalon stria { database cross reference=FMA:67950 }
stria of telencephalon SubClassOf part of some telencephalon
stria of telencephalon SubClassOf white matter of telencephalon
stria of telencephalon SubClassOf stria of neuraxis
stria of telencephalon database cross reference FMA:67950

New Class : white matter of midbrain

white matter of midbrain database cross reference FMA:83936
white matter of midbrain SubClassOf part of some midbrain
white matter of midbrain label white matter of midbrain
white matter of midbrain has obo namespace uberon
white matter of midbrain EquivalentTo white matter and part of some midbrain
white matter of midbrain id UBERON:0016554
white matter of midbrain SubClassOf brain white matter

New Class : respiratory system mucus

respiratory system mucus definition Any mucus produced by a mucosae of the respiratory system. This includes the mucus produced in the nasal cavity (nasal mucus) and mucus produced in the respiratory tract (phlegm). { database cross reference=Respiratory system , database cross reference=UBERON:cjm }
respiratory system mucus SubClassOf mucus
respiratory system mucus id UBERON:0016553
respiratory system mucus has obo namespace uberon
respiratory system mucus EquivalentTo mucus and produced by some respiratory system mucosa
respiratory system mucus SubClassOf produced by some respiratory system mucosa
respiratory system mucus label respiratory system mucus

New Class : phlegm

phlegm has obo namespace uberon
phlegm SubClassOf produced by some respiratory tract
phlegm definition mucus produced in the respiratory tract. { database cross reference=UBERON:cjm }
phlegm database cross reference ncithesaurus:Phlegm
phlegm SubClassOf mucus
phlegm label phlegm
phlegm id UBERON:0016552
phlegm EquivalentTo mucus and produced by some respiratory tract
phlegm database cross reference http://linkedlifedata.com/resource/umls/id/C0225378

New Class : subdivision of spinal cord ventral column

subdivision of spinal cord ventral column has obo namespace uberon
subdivision of spinal cord ventral column SubClassOf spinal cord column
subdivision of spinal cord ventral column SubClassOf part of some spinal cord ventral column
subdivision of spinal cord ventral column id UBERON:0016551
subdivision of spinal cord ventral column in subset non informative
subdivision of spinal cord ventral column label subdivision of spinal cord ventral column

New Class : spinal cord column

spinal cord column SubClassOf central nervous system cell part cluster
spinal cord column has obo namespace uberon
spinal cord column id UBERON:0016550
spinal cord column SubClassOf part of some spinal cord
spinal cord column label spinal cord column

New Class : gelatinous layer of statoconial membrane

gelatinous layer of statoconial membrane database cross reference FMA:75588
gelatinous layer of statoconial membrane SubClassOf part of some statoconial membrane
gelatinous layer of statoconial membrane SubClassOf ectoderm-derived structure
gelatinous layer of statoconial membrane id UBERON:0016568
gelatinous layer of statoconial membrane label gelatinous layer of statoconial membrane
gelatinous layer of statoconial membrane has obo namespace uberon
gelatinous layer of statoconial membrane SubClassOf structure with developmental contribution from neural crest
gelatinous layer of statoconial membrane SubClassOf acellular anatomical structure

New Class : statoconial membrane

statoconial membrane label statoconial membrane
statoconial membrane database cross reference FMA:75570
statoconial membrane has narrow synonym otolith membrane
statoconial membrane id UBERON:0016567
statoconial membrane SubClassOf bounding layer of some otolith organ
statoconial membrane SubClassOf part of some vestibular labyrinth
statoconial membrane SubClassOf structure with developmental contribution from neural crest
statoconial membrane SubClassOf acellular membrane
statoconial membrane has obo namespace uberon
statoconial membrane definition An acellular membrane in the vestibular labyrinth that is composed of the otoconial layer, gelatinous layer, and a subcupular meshwork. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/2482728 , database cross reference=UBERON:cjm }
statoconial membrane SubClassOf ectoderm-derived structure
statoconial membrane has exact synonym otoconial-statoconial membrane { database cross reference=ISBN:1565939948 }

New Class : subcupular meshwork of statoconial membrane

subcupular meshwork of statoconial membrane SubClassOf adjacent to some epithelium
subcupular meshwork of statoconial membrane SubClassOf adjacent to some otolithic part of statoconial membrane
subcupular meshwork of statoconial membrane definition An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other. { database cross reference=ISBN:1565939948 }
subcupular meshwork of statoconial membrane SubClassOf ectoderm-derived structure
subcupular meshwork of statoconial membrane SubClassOf acellular anatomical structure
subcupular meshwork of statoconial membrane id UBERON:0016569
subcupular meshwork of statoconial membrane SubClassOf part of some statoconial membrane
subcupular meshwork of statoconial membrane SubClassOf structure with developmental contribution from neural crest
subcupular meshwork of statoconial membrane has obo namespace uberon
subcupular meshwork of statoconial membrane EquivalentTo acellular anatomical structure and part of some statoconial membrane and adjacent to some epithelium and adjacent to some otolithic part of statoconial membrane
subcupular meshwork of statoconial membrane label subcupular meshwork of statoconial membrane

New Class : deep cerebral vein

deep cerebral vein has obo namespace uberon
deep cerebral vein database cross reference FMA:50989
deep cerebral vein label deep cerebral vein
deep cerebral vein id UBERON:0016564
deep cerebral vein SubClassOf cerebral vein

New Class : pit

pit id UBERON:0016566
pit label pit
pit definition An roughly circular indentation in a surface. { database cross reference=AEO:0000204 , database cross reference=AEO:JB }
pit has obo namespace uberon
pit SubClassOf anatomical surface
pit database cross reference AEO:0000204

New Class : cerebral blood vessel

cerebral blood vessel SubClassOf brain blood vessel
cerebral blood vessel SubClassOf structure with developmental contribution from neural crest
cerebral blood vessel EquivalentTo blood vessel and part of some cerebellum
cerebral blood vessel SubClassOf part of some vasculature of brain
cerebral blood vessel SubClassOf part of some cerebellum
cerebral blood vessel has obo namespace uberon
cerebral blood vessel label cerebral blood vessel
cerebral blood vessel id UBERON:0016565

New Class : lamina VI of gray matter of spinal cord

lamina VI of gray matter of spinal cord has exact synonym spinal lamina VI { database cross reference=FMA:68867 }
lamina VI of gray matter of spinal cord has obo namespace uberon
lamina VI of gray matter of spinal cord SubClassOf part of some dorsal horn of spinal cord
lamina VI of gray matter of spinal cord label lamina VI of gray matter of spinal cord
lamina VI of gray matter of spinal cord database cross reference FMA:68867
lamina VI of gray matter of spinal cord database cross reference NeuroNames:1699
lamina VI of gray matter of spinal cord has related synonym lamina VI { database cross reference=NeuroNames:1699 }
lamina VI of gray matter of spinal cord has related synonym lamina VI { database cross reference=NeuroNames:1699 , has synonym type=latin term }
lamina VI of gray matter of spinal cord has related synonym Rexed’s lamina VI { database cross reference=NeuroNames:1699 }
lamina VI of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord
lamina VI of gray matter of spinal cord has related synonym lamina spinalis VI { database cross reference=NeuroNames:1699 , has synonym type=latin term }
lamina VI of gray matter of spinal cord has related synonym lamina 6 { database cross reference=NeuroNames:1699 , has synonym type=latin term }
lamina VI of gray matter of spinal cord has related synonym base of the dorsal horn { database cross reference=NeuroNames:1699 }
lamina VI of gray matter of spinal cord id UBERON:0016577
lamina VI of gray matter of spinal cord has exact synonym rexed lamina VI { database cross reference=FMA:68867 }

New Class : lamina V of gray matter of spinal cord

lamina V of gray matter of spinal cord database cross reference FMA:68866
lamina V of gray matter of spinal cord has related synonym Rexed’s lamina V { database cross reference=NeuroNames:1698 }
lamina V of gray matter of spinal cord label lamina V of gray matter of spinal cord
lamina V of gray matter of spinal cord has obo namespace uberon
lamina V of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord
lamina V of gray matter of spinal cord has related synonym lamina spinalis V { database cross reference=NeuroNames:1698 , has synonym type=latin term }
lamina V of gray matter of spinal cord SubClassOf part of some nucleus proprius of spinal cord
lamina V of gray matter of spinal cord database cross reference NeuroNames:1698
lamina V of gray matter of spinal cord has related synonym neck of the dorsal horn { database cross reference=NeuroNames:1698 }
lamina V of gray matter of spinal cord has exact synonym spinal lamina V { database cross reference=FMA:68866 }
lamina V of gray matter of spinal cord has related synonym lamina V { database cross reference=NeuroNames:1698 }
lamina V of gray matter of spinal cord id UBERON:0016576
lamina V of gray matter of spinal cord has related synonym lamina 5 { database cross reference=NeuroNames:1698 }
lamina V of gray matter of spinal cord has exact synonym rexed lamina V { database cross reference=FMA:68866 }

New Class : lamina IV of gray matter of spinal cord

lamina IV of gray matter of spinal cord has related synonym Rexed’s lamina IV { database cross reference=NeuroNames:1696 }
lamina IV of gray matter of spinal cord database cross reference FMA:68865
lamina IV of gray matter of spinal cord has exact synonym spinal lamina IV { database cross reference=FMA:68865 }
lamina IV of gray matter of spinal cord SubClassOf part of some nucleus proprius of spinal cord
lamina IV of gray matter of spinal cord database cross reference NeuroNames:1696
lamina IV of gray matter of spinal cord has exact synonym rexed lamina IV { database cross reference=FMA:68865 }
lamina IV of gray matter of spinal cord has related synonym lamina IV@it { database cross reference=NeuroNames:1696 }
lamina IV of gray matter of spinal cord has obo namespace uberon
lamina IV of gray matter of spinal cord has related synonym lamina IV@es { database cross reference=NeuroNames:1696 }
lamina IV of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord
lamina IV of gray matter of spinal cord has related synonym lamina 4 { database cross reference=NeuroNames:1696 }
lamina IV of gray matter of spinal cord id UBERON:0016575
lamina IV of gray matter of spinal cord has related synonym lamina IV { database cross reference=NeuroNames:1696 }
lamina IV of gray matter of spinal cord has related synonym lamina spinalis IV { database cross reference=NeuroNames:1696 , has synonym type=latin term }
lamina IV of gray matter of spinal cord label lamina IV of gray matter of spinal cord

New Class : lamina III of gray matter of spinal cord

lamina III of gray matter of spinal cord has related synonym lamina spinalis III { database cross reference=NeuroNames:1695 , has synonym type=latin term }
lamina III of gray matter of spinal cord id UBERON:0016574
lamina III of gray matter of spinal cord has related synonym lamina 3 { database cross reference=NeuroNames:1695 }
lamina III of gray matter of spinal cord has exact synonym rexed lamina III { database cross reference=FMA:68864 }
lamina III of gray matter of spinal cord has related synonym Rexed’s lamina III { database cross reference=NeuroNames:1695 }
lamina III of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord
lamina III of gray matter of spinal cord has exact synonym spinal lamina III { database cross reference=FMA:68864 }
lamina III of gray matter of spinal cord has related synonym lamina III { database cross reference=NeuroNames:1695 }
lamina III of gray matter of spinal cord has obo namespace uberon
lamina III of gray matter of spinal cord label lamina III of gray matter of spinal cord
lamina III of gray matter of spinal cord database cross reference FMA:68864
lamina III of gray matter of spinal cord SubClassOf part of some nucleus proprius of spinal cord
lamina III of gray matter of spinal cord database cross reference NeuroNames:1695

New Class : lamina VIII of gray matter of spinal cord

lamina VIII of gray matter of spinal cord database cross reference FMA:68869
lamina VIII of gray matter of spinal cord has related synonym lamina spinalis { database cross reference=NeuroNames:1701 , has synonym type=latin term }
lamina VIII of gray matter of spinal cord has related synonym lamina VIII { database cross reference=NeuroNames:1701 }
lamina VIII of gray matter of spinal cord has related synonym Rexed’s lamina VIII { database cross reference=NeuroNames:1701 }
lamina VIII of gray matter of spinal cord has obo namespace uberon
lamina VIII of gray matter of spinal cord SubClassOf part of some ventral horn of spinal cord
lamina VIII of gray matter of spinal cord has exact synonym spinal lamina VIII { database cross reference=FMA:68869 }
lamina VIII of gray matter of spinal cord has related synonym lamina 8 { database cross reference=NeuroNames:1701 , has synonym type=latin term }
lamina VIII of gray matter of spinal cord has exact synonym rexed lamina VIII { database cross reference=FMA:68869 }
lamina VIII of gray matter of spinal cord database cross reference NeuroNames:1701
lamina VIII of gray matter of spinal cord id UBERON:0016579
lamina VIII of gray matter of spinal cord label lamina VIII of gray matter of spinal cord
lamina VIII of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord

New Class : lamina VII of gray matter of spinal cord

lamina VII of gray matter of spinal cord has related synonym lamina spinalis VII { database cross reference=NeuroNames:1700 , has synonym type=latin term }
lamina VII of gray matter of spinal cord has related synonym lamina VII { database cross reference=NeuroNames:1700 , has synonym type=latin term }
lamina VII of gray matter of spinal cord has related synonym Rexed’s lamina VII { database cross reference=NeuroNames:1700 }
lamina VII of gray matter of spinal cord has related synonym lamina 7 { database cross reference=NeuroNames:1700 , has synonym type=latin term }
lamina VII of gray matter of spinal cord id UBERON:0016578
lamina VII of gray matter of spinal cord database cross reference FMA:68868
lamina VII of gray matter of spinal cord database cross reference NeuroNames:1700
lamina VII of gray matter of spinal cord has exact synonym rexed lamina VII { database cross reference=FMA:68868 }
lamina VII of gray matter of spinal cord has exact synonym spinal lamina VII { database cross reference=FMA:68868 }
lamina VII of gray matter of spinal cord has obo namespace uberon
lamina VII of gray matter of spinal cord has related synonym lamina VII { database cross reference=NeuroNames:1700 }
lamina VII of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord
lamina VII of gray matter of spinal cord label lamina VII of gray matter of spinal cord

New Class : obsolete lamina II of gray matter of spinal cord

obsolete lamina II of gray matter of spinal cord term replaced by UBERON:0002181
obsolete lamina II of gray matter of spinal cord label obsolete lamina II of gray matter of spinal cord
obsolete lamina II of gray matter of spinal cord id UBERON:0016573
obsolete lamina II of gray matter of spinal cord deprecated true
obsolete lamina II of gray matter of spinal cord has obo namespace uberon

New Class : lamina of gray matter of spinal cord

lamina of gray matter of spinal cord database cross reference FMA:68861
lamina of gray matter of spinal cord has exact synonym rexed lamina { database cross reference=FMA:68861 }
lamina of gray matter of spinal cord SubClassOf central nervous system cell part cluster
lamina of gray matter of spinal cord has obo namespace uberon
lamina of gray matter of spinal cord database cross reference http://neurolex.org/wiki/Category:Rexed_spinal_cord_parcellation_scheme_region
lamina of gray matter of spinal cord id UBERON:0016570
lamina of gray matter of spinal cord database cross reference http://en.wikipedia.org/wiki/Rexed_laminae
lamina of gray matter of spinal cord SubClassOf part of some gray matter of spinal cord
lamina of gray matter of spinal cord label lamina of gray matter of spinal cord

New Class : lamina IX of gray matter of spinal cord

lamina IX of gray matter of spinal cord has exact synonym rexed lamina IX { database cross reference=FMA:68870 }
lamina IX of gray matter of spinal cord id UBERON:0016580
lamina IX of gray matter of spinal cord database cross reference FMA:68870
lamina IX of gray matter of spinal cord label lamina IX of gray matter of spinal cord
lamina IX of gray matter of spinal cord SubClassOf part of some ventral horn of spinal cord
lamina IX of gray matter of spinal cord has exact synonym spinal lamina IX { database cross reference=FMA:68870 }
lamina IX of gray matter of spinal cord has obo namespace uberon
lamina IX of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord

New Class : cavity of left ventricle

cavity of left ventricle has obo namespace uberon
cavity of left ventricle SubClassOf part of some heart left ventricle
cavity of left ventricle definition Cavity of ventricle which is surrounded by the wall of left ventricle and is continuous with the lumen of the aorta. { database cross reference=FMA:9466 }
cavity of left ventricle has exact synonym left ventricular cavity { database cross reference=FMA:FMA }
cavity of left ventricle label cavity of left ventricle
cavity of left ventricle database cross reference EMAPA:26038
cavity of left ventricle database cross reference FMA:9466
cavity of left ventricle EquivalentTo anatomical cavity and part of some heart left ventricle
cavity of left ventricle SubClassOf anatomical cavity
cavity of left ventricle id UBERON:0016514

New Class : muscular layer of prostatic urethra

muscular layer of prostatic urethra database cross reference EMAPA:30956
muscular layer of prostatic urethra SubClassOf male anatomical structure
muscular layer of prostatic urethra id UBERON:0016515
muscular layer of prostatic urethra has obo namespace uberon
muscular layer of prostatic urethra SubClassOf part of some prostatic urethra
muscular layer of prostatic urethra has exact synonym muscle layer of prostatic part of urethra { database cross reference=FMA:FMA }
muscular layer of prostatic urethra has exact synonym muscle layer of prostatic urethra { database cross reference=FMA:FMA }
muscular layer of prostatic urethra database cross reference FMA:19699
muscular layer of prostatic urethra has exact synonym muscular coat of prostatic urethra { database cross reference=FMA:FMA }
muscular layer of prostatic urethra SubClassOf reproductive structure
muscular layer of prostatic urethra SubClassOf urinary system structure
muscular layer of prostatic urethra EquivalentTo muscle layer and part of some prostatic urethra
muscular layer of prostatic urethra has exact synonym muscle layer of prostatic urethra { database cross reference=EMAPA:30956 }
muscular layer of prostatic urethra SubClassOf muscle layer
muscular layer of prostatic urethra label muscular layer of prostatic urethra

New Class : lumen of duodenum

lumen of duodenum id UBERON:0016512
lumen of duodenum database cross reference EMAPA:19080
lumen of duodenum database cross reference FMA:14589
lumen of duodenum has exact synonym doudenal lumen { database cross reference=FMA:FMA }
lumen of duodenum SubClassOf part of some duodenum
lumen of duodenum has obo namespace uberon
lumen of duodenum label lumen of duodenum
lumen of duodenum EquivalentTo anatomical space and part of some duodenum
lumen of duodenum has exact synonym duodenal lumen { database cross reference=FMA:FMA }
lumen of duodenum SubClassOf anatomical space

New Class : cavity of left atrium

cavity of left atrium database cross reference EMAPA:26011
cavity of left atrium label cavity of left atrium
cavity of left atrium has obo namespace uberon
cavity of left atrium SubClassOf anatomical cavity
cavity of left atrium has exact synonym left atrium lumen { database cross reference=EMAPA:26011 }
cavity of left atrium database cross reference FMA:9465
cavity of left atrium id UBERON:0016513
cavity of left atrium definition Cavity of atrium which is surrounded by the wall of left atrium and is continuous with the lumen of the pulmonary vein. { database cross reference=FMA:9465 }
cavity of left atrium EquivalentTo anatomical cavity and part of some left cardiac atrium
cavity of left atrium SubClassOf part of some left cardiac atrium
cavity of left atrium has exact synonym left atrial cavity { database cross reference=FMA:FMA }

New Class : epithelium of male urethra

epithelium of male urethra database cross reference EMAPA:30467
epithelium of male urethra SubClassOf male anatomical structure
epithelium of male urethra id UBERON:0016510
epithelium of male urethra SubClassOf epithelium of urethra
epithelium of male urethra SubClassOf part of some male urethra
epithelium of male urethra has obo namespace uberon
epithelium of male urethra label epithelium of male urethra
epithelium of male urethra has exact synonym urethral epithelium of male { database cross reference=EMAPA:30467 }
epithelium of male urethra EquivalentTo epithelium and part of some male urethra
epithelium of male urethra has exact synonym male urethral epithelium { database cross reference=FMA:FMA }
epithelium of male urethra database cross reference FMA:19684

New Class : lamina propria of fundus of stomach

lamina propria of fundus of stomach id UBERON:0016511
lamina propria of fundus of stomach SubClassOf gastrointestinal system lamina propria
lamina propria of fundus of stomach has exact synonym lamina propria mucosae of fundus of stomach { database cross reference=FMA:FMA }
lamina propria of fundus of stomach database cross reference EMAPA:27163
lamina propria of fundus of stomach SubClassOf stomach region
lamina propria of fundus of stomach has obo namespace uberon
lamina propria of fundus of stomach SubClassOf part of some mucosa of fundus of stomach
lamina propria of fundus of stomach database cross reference FMA:17500
lamina propria of fundus of stomach database cross reference EMAPA:27423
lamina propria of fundus of stomach label lamina propria of fundus of stomach
lamina propria of fundus of stomach EquivalentTo lamina propria and part of some mucosa of fundus of stomach

New Class : muscularis mucosae of jejunum

muscularis mucosae of jejunum has obo namespace uberon
muscularis mucosae of jejunum database cross reference EMAPA:27121
muscularis mucosae of jejunum label muscularis mucosae of jejunum
muscularis mucosae of jejunum SubClassOf muscularis mucosae of small intestine
muscularis mucosae of jejunum EquivalentTo muscularis mucosa and part of some jejunum
muscularis mucosae of jejunum id UBERON:0016519
muscularis mucosae of jejunum database cross reference FMA:15063
muscularis mucosae of jejunum database cross reference EMAPA:27371
muscularis mucosae of jejunum SubClassOf part of some jejunal mucosa
muscularis mucosae of jejunum SubClassOf part of some jejunum

New Class : lumen of jejunum

lumen of jejunum has exact synonym jejunum lumen { database cross reference=FMA:FMA }
lumen of jejunum has exact synonym jejunal lumen { database cross reference=FMA:FMA }
lumen of jejunum database cross reference EMAPA:18729
lumen of jejunum SubClassOf anatomical space
lumen of jejunum SubClassOf part of some jejunum
lumen of jejunum database cross reference EMAPA:18935
lumen of jejunum EquivalentTo anatomical space and part of some jejunum
lumen of jejunum label lumen of jejunum
lumen of jejunum database cross reference FMA:14590
lumen of jejunum has obo namespace uberon
lumen of jejunum id UBERON:0016517

New Class : lamina propria of prostatic urethra

lamina propria of prostatic urethra has exact synonym lamina propria of prostatic part of urethra { database cross reference=FMA:FMA }
lamina propria of prostatic urethra has obo namespace uberon
lamina propria of prostatic urethra EquivalentTo lamina propria and part of some prostatic urethra
lamina propria of prostatic urethra has exact synonym lamina propria of prostatic urethra { database cross reference=EMAPA:32303 }
lamina propria of prostatic urethra SubClassOf lamina propria of urethra
lamina propria of prostatic urethra database cross reference FMA:19693
lamina propria of prostatic urethra id UBERON:0016516
lamina propria of prostatic urethra database cross reference EMAPA:32303
lamina propria of prostatic urethra SubClassOf reproductive structure
lamina propria of prostatic urethra label lamina propria of prostatic urethra
lamina propria of prostatic urethra SubClassOf part of some prostatic urethra
lamina propria of prostatic urethra SubClassOf male anatomical structure

New Class : muscle layer of spongiose part of urethra

muscle layer of spongiose part of urethra SubClassOf part of some spongiose part of urethra
muscle layer of spongiose part of urethra has exact synonym muscular layer of spongy urethra { database cross reference=FMA:FMA }
muscle layer of spongiose part of urethra has exact synonym muscle layer of penile urethra { database cross reference=FMA:FMA }
muscle layer of spongiose part of urethra id UBERON:0016524
muscle layer of spongiose part of urethra database cross reference EMAPA:30950
muscle layer of spongiose part of urethra EquivalentTo muscle layer and part of some spongiose part of urethra
muscle layer of spongiose part of urethra has exact synonym muscle layer of spongy urethra { database cross reference=FMA:FMA }
muscle layer of spongiose part of urethra SubClassOf muscle layer
muscle layer of spongiose part of urethra has exact synonym muscular coat of spongy urethra { database cross reference=FMA:FMA }
muscle layer of spongiose part of urethra label muscle layer of spongiose part of urethra
muscle layer of spongiose part of urethra database cross reference FMA:19701
muscle layer of spongiose part of urethra has exact synonym muscle layer of penile urethra { database cross reference=EMAPA:30950 }
muscle layer of spongiose part of urethra SubClassOf urinary system structure
muscle layer of spongiose part of urethra SubClassOf male anatomical structure
muscle layer of spongiose part of urethra has obo namespace uberon
muscle layer of spongiose part of urethra SubClassOf reproductive structure

New Class : frontal lobe

frontal lobe id UBERON:0016525
frontal lobe database cross reference http://linkedlifedata.com/resource/umls/id/C0016733
frontal lobe has obo namespace uberon
frontal lobe database cross reference UMLS:C0016733 { source=ncithesaurus:Frontal_Lobe }
frontal lobe database cross reference OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA
frontal lobe has exact synonym lobi frontales { database cross reference=NeuroNames:56 , has synonym type=latin term }
frontal lobe database cross reference http://www.snomedbrowser.com/Codes/Details/180920004
frontal lobe database cross reference CALOHA:TS-0389
frontal lobe database cross reference ncithesaurus:Frontal_Lobe
frontal lobe database cross reference UMLS:C1268977 { source=NIF_GrossAnatomy:birnlex_928 }
frontal lobe database cross reference NIF_GrossAnatomy:birnlex_928
frontal lobe database cross reference NeuroNames:56 { source=NIF_GrossAnatomy:birnlex_928 }
frontal lobe has exact synonym lobus frontalis { database cross reference=http://en.wikipedia.org/wiki/Frontal_lobe , has synonym type=latin term }
frontal lobe SubClassOf adjacent to some temporal lobe
frontal lobe database cross reference http://linkedlifedata.com/resource/umls/id/C1268977
frontal lobe database cross reference UMLS:C0016733 { source=NIF_GrossAnatomy:birnlex_928 }
frontal lobe database cross reference BM:Tel-Cx-FR
frontal lobe has broad synonym frontal region { database cross reference=FMA:61824 }
frontal lobe SubClassOf lobe of cerebral hemisphere
frontal lobe in subset efo slim
frontal lobe database cross reference FMA:61824
frontal lobe has broad synonym regio frontalis { database cross reference=FMA:61824 , database cross reference=FMA:TA , has synonym type=latin term }
frontal lobe has narrow synonym frontal cortex { database cross reference=FMA:61824 }
frontal lobe database cross reference BAMS:Frontal_lobe
frontal lobe database cross reference EV:0100167
frontal lobe definition Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border. { database cross reference=FMA:61824 }
frontal lobe has broad synonym regio frontalis { database cross reference=FMA:TA , has synonym type=latin term }
frontal lobe database cross reference MESH:A08.186.211.730.885.213.270
frontal lobe SubClassOf contributes to morphology of some telencephalon
frontal lobe database cross reference EFO:0000913
frontal lobe comment Editor note: Many species don’t have lobes but they do have frontal cortex. Lobe isn’t a really well defined term though [MM]
frontal lobe label frontal lobe
frontal lobe database cross reference MAT:0000505
frontal lobe SubClassOf adjacent to some parietal lobe

New Class : lobe of cerebral hemisphere

lobe of cerebral hemisphere database cross reference FMA:61823
lobe of cerebral hemisphere has obo namespace uberon
lobe of cerebral hemisphere has related synonym segment of cerebral cortex { database cross reference=NIF_GrossAnatomy:birnlex_922 }
lobe of cerebral hemisphere id UBERON:0016526
lobe of cerebral hemisphere SubClassOf structure with developmental contribution from neural crest
lobe of cerebral hemisphere has exact synonym cerebral hemisphere lobe { database cross reference=FMA:61823 }
lobe of cerebral hemisphere has related synonym lobes of the brain { database cross reference=NIF_GrossAnatomy:birnlex_922 }
lobe of cerebral hemisphere SubClassOf ectoderm-derived structure
lobe of cerebral hemisphere label lobe of cerebral hemisphere
lobe of cerebral hemisphere has exact synonym lobe of cerebral cortex { database cross reference=NIF_GrossAnatomy:birnlex_922 }
lobe of cerebral hemisphere SubClassOf organ part
lobe of cerebral hemisphere database cross reference NIF_GrossAnatomy:birnlex_922
lobe of cerebral hemisphere has related synonym regional organ part of cerebral cortex { database cross reference=FMA:68603 }
lobe of cerebral hemisphere comment We use the term lobe broadly as a rough regional area, encompassing homologous regions in smooth-brained mammals. We subdivide the lobes into white matter and neocortical parts.
lobe of cerebral hemisphere has exact synonym lobe parts of cerebral cortex { database cross reference=NIF_GrossAnatomy:birnlex_922 }
lobe of cerebral hemisphere has related synonym cerebral cortical segment { database cross reference=FMA:68603 }
lobe of cerebral hemisphere definition Subdivision of telencephalon which is one of a number of subdivisions of each hemisphere separated by both real landmarks (sulci and fissures) and arbitrary boundaries[FMA,modified]. { database cross reference=FMA:61823 }
lobe of cerebral hemisphere SubClassOf part of some cerebral hemisphere

New Class : epithelium of female urethra

epithelium of female urethra label epithelium of female urethra
epithelium of female urethra id UBERON:0016520
epithelium of female urethra database cross reference FMA:19774
epithelium of female urethra has obo namespace uberon
epithelium of female urethra has exact synonym female urethral epithelium { database cross reference=FMA:FMA }
epithelium of female urethra EquivalentTo epithelium and part of some female urethra
epithelium of female urethra database cross reference EMAPA:30470
epithelium of female urethra has exact synonym urethral epithelium of female { database cross reference=EMAPA:30470 }
epithelium of female urethra SubClassOf epithelium of urethra
epithelium of female urethra SubClassOf part of some female urethra
epithelium of female urethra SubClassOf female anatomical structure

New Class : cavity of right atrium

cavity of right atrium database cross reference EMAPA:26020
cavity of right atrium database cross reference FMA:11359
cavity of right atrium has exact synonym right atrial cavity { database cross reference=FMA:FMA }
cavity of right atrium has obo namespace uberon
cavity of right atrium EquivalentTo anatomical cavity and part of some right cardiac atrium
cavity of right atrium label cavity of right atrium
cavity of right atrium SubClassOf anatomical cavity
cavity of right atrium id UBERON:0016522
cavity of right atrium definition Cavity of atrium which is surrounded by the wall of right atrium and is continuous with the lumen of superior vena cava and inferior vena cava. { database cross reference=FMA:11359 }
cavity of right atrium SubClassOf part of some right cardiac atrium

New Class : white matter of frontal lobe

white matter of frontal lobe SubClassOf part of some frontal lobe
white matter of frontal lobe label white matter of frontal lobe
white matter of frontal lobe database cross reference http://www.snomedbrowser.com/Codes/Details/362331002
white matter of frontal lobe database cross reference FMA:256178
white matter of frontal lobe has obo namespace uberon
white matter of frontal lobe has exact synonym frontal lobe white matter
white matter of frontal lobe id UBERON:0016528
white matter of frontal lobe EquivalentTo white matter of cerebral lobe and part of some frontal lobe
white matter of frontal lobe SubClassOf white matter of cerebral lobe

New Class : white matter of cerebral lobe

white matter of cerebral lobe SubClassOf cerebral hemisphere white matter
white matter of cerebral lobe SubClassOf part of some lobe of cerebral hemisphere
white matter of cerebral lobe SubClassOf deep to some cortex of cerebral lobe
white matter of cerebral lobe label white matter of cerebral lobe
white matter of cerebral lobe database cross reference FMA:256176
white matter of cerebral lobe has obo namespace uberon
white matter of cerebral lobe id UBERON:0016527
white matter of cerebral lobe EquivalentTo cerebral hemisphere white matter and part of some lobe of cerebral hemisphere

New Class : cortex of cerebral lobe

cortex of cerebral lobe SubClassOf part of some lobe of cerebral hemisphere
cortex of cerebral lobe EquivalentTo cerebral hemisphere grey matter and part of some lobe of cerebral hemisphere
cortex of cerebral lobe SubClassOf part of some neocortex
cortex of cerebral lobe SubClassOf cerebral hemisphere grey matter
cortex of cerebral lobe has exact synonym cortex of cerebral hemisphere lobe { database cross reference=FMA:242197 }
cortex of cerebral lobe id UBERON:0016529
cortex of cerebral lobe database cross reference FMA:242197
cortex of cerebral lobe has exact synonym cortex of lobe of cerebral hemisphere { database cross reference=FMA:242197 }
cortex of cerebral lobe label cortex of cerebral lobe
cortex of cerebral lobe has related synonym neocortical part of cerebral hemisphere
cortex of cerebral lobe has obo namespace uberon

New Class : cortex of parietal lobe

cortex of parietal lobe id UBERON:0016530
cortex of parietal lobe has obo namespace uberon
cortex of parietal lobe database cross reference FMA:242203
cortex of parietal lobe SubClassOf part of some parietal lobe
cortex of parietal lobe EquivalentTo cerebral hemisphere grey matter and part of some parietal lobe
cortex of parietal lobe database cross reference http://www.snomedbrowser.com/Codes/Details/369217001
cortex of parietal lobe label cortex of parietal lobe
cortex of parietal lobe has exact synonym parietal lobe cortex { database cross reference=FMA:242203 }
cortex of parietal lobe SubClassOf cortex of cerebral lobe

New Class : white matter of parietal lobe

white matter of parietal lobe SubClassOf white matter of cerebral lobe
white matter of parietal lobe label white matter of parietal lobe
white matter of parietal lobe EquivalentTo white matter of cerebral lobe and part of some parietal lobe
white matter of parietal lobe database cross reference http://www.snomedbrowser.com/Codes/Details/369200008
white matter of parietal lobe has obo namespace uberon
white matter of parietal lobe database cross reference FMA:256184
white matter of parietal lobe SubClassOf part of some parietal lobe
white matter of parietal lobe id UBERON:0016531

New Class : white matter of limbic lobe

white matter of limbic lobe EquivalentTo white matter of cerebral lobe and part of some limbic lobe
white matter of limbic lobe SubClassOf white matter of cerebral lobe
white matter of limbic lobe id UBERON:0016536
white matter of limbic lobe has obo namespace uberon
white matter of limbic lobe label white matter of limbic lobe
white matter of limbic lobe SubClassOf part of some limbic lobe
white matter of limbic lobe database cross reference FMA:261091

New Class : white matter of temporal lobe

white matter of temporal lobe database cross reference http://www.snomedbrowser.com/Codes/Details/362344007
white matter of temporal lobe EquivalentTo white matter of cerebral lobe and part of some temporal lobe
white matter of temporal lobe id UBERON:0016534
white matter of temporal lobe SubClassOf part of some temporal lobe
white matter of temporal lobe database cross reference FMA:256186
white matter of temporal lobe SubClassOf white matter of cerebral lobe
white matter of temporal lobe has obo namespace uberon
white matter of temporal lobe label white matter of temporal lobe

New Class : white matter of occipital lobe

white matter of occipital lobe SubClassOf white matter of cerebral lobe
white matter of occipital lobe database cross reference http://www.snomedbrowser.com/Codes/Details/362339000
white matter of occipital lobe has obo namespace uberon
white matter of occipital lobe id UBERON:0016535
white matter of occipital lobe database cross reference FMA:256188
white matter of occipital lobe SubClassOf part of some occipital lobe
white matter of occipital lobe label white matter of occipital lobe
white matter of occipital lobe EquivalentTo white matter of cerebral lobe and part of some occipital lobe

New Class : cortex of temporal lobe

cortex of temporal lobe has obo namespace uberon
cortex of temporal lobe EquivalentTo cerebral hemisphere grey matter and part of some temporal lobe
cortex of temporal lobe SubClassOf cortex of cerebral lobe
cortex of temporal lobe has exact synonym temporal lobe cortex { database cross reference=FMA:242201 }
cortex of temporal lobe id UBERON:0016538
cortex of temporal lobe SubClassOf part of some temporal lobe
cortex of temporal lobe label cortex of temporal lobe
cortex of temporal lobe database cross reference FMA:242201

New Class : cortex of occipital lobe

cortex of occipital lobe id UBERON:0016540
cortex of occipital lobe SubClassOf part of some occipital lobe
cortex of occipital lobe SubClassOf cortex of cerebral lobe
cortex of occipital lobe label cortex of occipital lobe
cortex of occipital lobe has obo namespace uberon
cortex of occipital lobe has exact synonym occipital lobe cortex { database cross reference=FMA:242205 }
cortex of occipital lobe EquivalentTo cerebral hemisphere grey matter and part of some occipital lobe
cortex of occipital lobe database cross reference FMA:242205

New Class : cortex of limbic lobe

cortex of limbic lobe database cross reference FMA:242234
cortex of limbic lobe EquivalentTo cerebral hemisphere grey matter and part of some limbic lobe
cortex of limbic lobe SubClassOf cortex of cerebral lobe
cortex of limbic lobe label cortex of limbic lobe
cortex of limbic lobe has exact synonym limbic lobe cortex { database cross reference=FMA:242234 }
cortex of limbic lobe SubClassOf part of some limbic lobe
cortex of limbic lobe id UBERON:0016542
cortex of limbic lobe has obo namespace uberon

New Class : pharyngeal ectoderm

pharyngeal ectoderm id UBERON:0016545
pharyngeal ectoderm SubClassOf embryonic tissue
pharyngeal ectoderm SubClassOf unilaminar epithelium
pharyngeal ectoderm database cross reference TAO:0001379
pharyngeal ectoderm SubClassOf part of some chordate pharynx
pharyngeal ectoderm has alternative id UBERON:2001379
pharyngeal ectoderm EquivalentTo unilaminar epithelium and part of some external ectoderm and part of some chordate pharynx
pharyngeal ectoderm definition The external part of the developing pharynx that is made of ectoderm. During vertebrate development, pockets form in pharyngeal ectoderm between the pharyngeal arches. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23020903 , database cross reference=UBERON:cjm }
pharyngeal ectoderm has obo namespace uberon
pharyngeal ectoderm SubClassOf part of some external ectoderm
pharyngeal ectoderm database cross reference ZFA:0001379
pharyngeal ectoderm SubClassOf pharyngeal epithelium
pharyngeal ectoderm label pharyngeal ectoderm

New Class : lower foregut region endoderm

lower foregut region endoderm label lower foregut region endoderm
lower foregut region endoderm SubClassOf gut epithelium
lower foregut region endoderm SubClassOf part of some gut epithelium
lower foregut region endoderm database cross reference EHDAA2:0000566
lower foregut region endoderm SubClassOf develops from some endoderm of foregut
lower foregut region endoderm SubClassOf unilaminar epithelium
lower foregut region endoderm has obo namespace uberon
lower foregut region endoderm SubClassOf endo-epithelium
lower foregut region endoderm id UBERON:0016547

New Class : central nervous system gray matter layer

central nervous system gray matter layer SubClassOf ectoderm-derived structure
central nervous system gray matter layer has broad synonym grey matter layer
central nervous system gray matter layer EquivalentTo organ component layer and part of some gray matter
central nervous system gray matter layer definition A layer of of the central nervous system that is part of gray matter. { database cross reference=UBERON:cjm }
central nervous system gray matter layer database cross reference FMA:83142
central nervous system gray matter layer SubClassOf organ component layer
central nervous system gray matter layer label central nervous system gray matter layer
central nervous system gray matter layer has exact synonym gray matter layer of neuraxis { database cross reference=FMA:83142 }
central nervous system gray matter layer has exact synonym CNS gray matter layer
central nervous system gray matter layer has exact synonym grey matter layer of neuraxis
central nervous system gray matter layer has obo namespace uberon
central nervous system gray matter layer SubClassOf part of some gray matter
central nervous system gray matter layer has exact synonym CNS grey matter layer
central nervous system gray matter layer id UBERON:0016548

New Class : central nervous system white matter layer

central nervous system white matter layer has exact synonym white matter layer of neuraxis { database cross reference=FMA:83898 }
central nervous system white matter layer has broad synonym white matter layer
central nervous system white matter layer label central nervous system white matter layer
central nervous system white matter layer EquivalentTo organ component layer and part of some white matter
central nervous system white matter layer SubClassOf ectoderm-derived structure
central nervous system white matter layer has obo namespace uberon
central nervous system white matter layer SubClassOf part of some white matter
central nervous system white matter layer has exact synonym CNS white matter layer
central nervous system white matter layer SubClassOf organ component layer
central nervous system white matter layer database cross reference FMA:83898
central nervous system white matter layer definition A layer of of the central nervous system that is composed of white matter. { database cross reference=UBERON:cjm }
central nervous system white matter layer id UBERON:0016549

New Class : pelvic ganglion

pelvic ganglion has exact synonym inferior hypogastric ganglion { database cross reference=FMA:80131 }
pelvic ganglion has obo namespace uberon
pelvic ganglion SubClassOf prevertebral ganglion
pelvic ganglion database cross reference EMAPA:31527
pelvic ganglion database cross reference EMAPA:31522
pelvic ganglion database cross reference FMA:80131
pelvic ganglion label pelvic ganglion
pelvic ganglion id UBERON:0016508

New Class : Mullerian tubercle

Mullerian tubercle SubClassOf embryonic structure
Mullerian tubercle database cross reference EMAPA:18328
Mullerian tubercle SubClassOf urinary system structure
Mullerian tubercle SubClassOf part of some primitive urogenital sinus
Mullerian tubercle has exact synonym Müllerian tubercle { database cross reference=UBERON:cjm }
Mullerian tubercle has exact synonym mullerian tubercle { database cross reference=FMA:72175 }
Mullerian tubercle SubClassOf connects some Mullerian duct
Mullerian tubercle SubClassOf female anatomical structure
Mullerian tubercle label Mullerian tubercle
Mullerian tubercle SubClassOf part of some female reproductive system
Mullerian tubercle database cross reference FMA:72175
Mullerian tubercle id UBERON:0016505
Mullerian tubercle has obo namespace uberon
Mullerian tubercle has exact synonym Muellerian tubercle { database cross reference=UBERON:cjm }
Mullerian tubercle definition An elevation on the wall of the embryonic urogenital sinus where the Müllerian ducts enter. { database cross reference=http://www.merriam-webster.com/medical/m%C3%BCllerian%20tubercle }
Mullerian tubercle SubClassOf reproductive structure

New Class : cavity of right ventricle

cavity of right ventricle EquivalentTo anatomical cavity and enclosed by some heart right ventricle
cavity of right ventricle id UBERON:0016509
cavity of right ventricle has exact synonym right ventricle lumen { database cross reference=EMAPA:26047 }
cavity of right ventricle database cross reference FMA:9291
cavity of right ventricle database cross reference EMAPA:26047
cavity of right ventricle SubClassOf anatomical cavity
cavity of right ventricle has obo namespace uberon
cavity of right ventricle SubClassOf enclosed by some heart right ventricle
cavity of right ventricle label cavity of right ventricle
cavity of right ventricle has exact synonym right ventricular cavity { database cross reference=FMA:FMA }
cavity of right ventricle definition Cavity of ventricle which is surroounded by the wall of right vetricle and is contiuous with the lumen of the pulmonary trunk. { database cross reference=FMA:9291 }

New Class : muscularis mucosa of fundus of urinary bladder

muscularis mucosa of fundus of urinary bladder id UBERON:0016500
muscularis mucosa of fundus of urinary bladder SubClassOf part of some fundus of urinary bladder
muscularis mucosa of fundus of urinary bladder SubClassOf part of some urinary bladder muscularis mucosa
muscularis mucosa of fundus of urinary bladder label muscularis mucosa of fundus of urinary bladder
muscularis mucosa of fundus of urinary bladder has obo namespace uberon
muscularis mucosa of fundus of urinary bladder EquivalentTo muscularis mucosa and part of some fundus of urinary bladder
muscularis mucosa of fundus of urinary bladder database cross reference EMAPA:28625
muscularis mucosa of fundus of urinary bladder SubClassOf urinary bladder muscularis mucosa

New Class : umbilical ring

umbilical ring database cross reference http://en.wikipedia.org/wiki/Umbilical_ring
umbilical ring has obo namespace uberon
umbilical ring label umbilical ring
umbilical ring SubClassOf surrounds some umbilicus
umbilical ring database cross reference http://www.snomedbrowser.com/Codes/Details/368065003
umbilical ring definition A dense fibrous ring surrounding the umbilicus at birth. At about the sixth week of embryological development, the midgut herniates through the umbilical ring; four weeks later it returns to the abdominal cavity and rotates around the superior mesenteric artery. { database cross reference=http://en.wikipedia.org/wiki/Umbilical_ring }
umbilical ring SubClassOf part of some extraembryonic structure
umbilical ring id UBERON:0016504
umbilical ring database cross reference FMA:19930
umbilical ring SubClassOf orifice

New Class : stomach fundus lumen

stomach fundus lumen has obo namespace uberon
stomach fundus lumen database cross reference FMA:17077
stomach fundus lumen SubClassOf enclosed by some fundus of stomach
stomach fundus lumen id UBERON:0016502
stomach fundus lumen has exact synonym lumen of stomach fundus
stomach fundus lumen SubClassOf anatomical space
stomach fundus lumen database cross reference EMAPA:18382
stomach fundus lumen has exact synonym lumen of fundus of stomach { database cross reference=FMA:17077 }
stomach fundus lumen label stomach fundus lumen
stomach fundus lumen has exact synonym cavity of fundus of stomach { database cross reference=FMA:17077 }
stomach fundus lumen EquivalentTo anatomical space and enclosed by some fundus of stomach

New Class : muscularis mucosae of fundus of stomach

muscularis mucosae of fundus of stomach id UBERON:0016501
muscularis mucosae of fundus of stomach SubClassOf part of some fundus of stomach
muscularis mucosae of fundus of stomach SubClassOf part of some muscularis mucosae of stomach
muscularis mucosae of fundus of stomach has obo namespace uberon
muscularis mucosae of fundus of stomach SubClassOf muscularis mucosae of stomach
muscularis mucosae of fundus of stomach database cross reference FMA:17278
muscularis mucosae of fundus of stomach SubClassOf part of some mucosa of fundus of stomach
muscularis mucosae of fundus of stomach EquivalentTo muscularis mucosa and part of some fundus of stomach
muscularis mucosae of fundus of stomach label muscularis mucosae of fundus of stomach

New Class : rexed lamina xi

rexed lamina xi label rexed lamina xi
rexed lamina xi deprecated true
rexed lamina xi id UBERON:0016593
rexed lamina xi consider FMA:68872
rexed lamina xi has obo namespace uberon
rexed lamina xi comment Rexed lamina system typically extends to X

New Class : rexed lamina xii

rexed lamina xii consider FMA:68873
rexed lamina xii comment Rexed lamina system typically extends to X
rexed lamina xii id UBERON:0016594
rexed lamina xii has obo namespace uberon
rexed lamina xii deprecated true
rexed lamina xii label rexed lamina xii

New Class : nucleus proprius of spinal cord

nucleus proprius of spinal cord id UBERON:0016610
nucleus proprius of spinal cord SubClassOf part of some dorsal horn of spinal cord
nucleus proprius of spinal cord definition The Nucleus proprius is a layer of the spinal cord adjacent to the substantia gelatinosa. Nucleus proprius constitutes the bulk of the dorsal horn and receives inputs from the dorsal root ganglions that carry sensory information, such as light touch, as well as pain and temperature information. Cells in this nucleus project to deeper laminae of the spinal cord, to the posterior column nuclei, and to other supraspinal relay centers including the midbrain, thalamus, and hypothalamus. Rexed laminae III, IV, and V make up the nucleus propius Nucleus proprius (NP), along with nucleus dorsalis (ND) are involved in sensing fine touch and proprioception. { database cross reference=http://en.wikipedia.org/wiki/Nucleus_proprius_of_spinal_cord }
nucleus proprius of spinal cord database cross reference NeuroNames:1633
nucleus proprius of spinal cord has related synonym nucleus proprius dorsalis { database cross reference=NeuroNames:1633 , has synonym type=latin term }
nucleus proprius of spinal cord has related synonym nucleus proprius { database cross reference=http://en.wikipedia.org/wiki/Nucleus_proprius_of_spinal_cord }
nucleus proprius of spinal cord has related synonym nucleus proprius of the spinal cord { database cross reference=NeuroNames:1633 }
nucleus proprius of spinal cord has related synonym proper sensory nucleus { database cross reference=NeuroNames:1633 }
nucleus proprius of spinal cord has related synonym nucleus proprius cornu dorsalis { database cross reference=NeuroNames:1633 , has synonym type=latin term }
nucleus proprius of spinal cord has exact synonym proper sensory nucleus { database cross reference=FMA:73906 }
nucleus proprius of spinal cord has obo namespace uberon
nucleus proprius of spinal cord database cross reference FMA:73906
nucleus proprius of spinal cord database cross reference http://en.wikipedia.org/wiki/Nucleus_proprius_of_spinal_cord
nucleus proprius of spinal cord label nucleus proprius of spinal cord
nucleus proprius of spinal cord has related synonym nucleus proprius { database cross reference=NeuroNames:1633 }
nucleus proprius of spinal cord has related synonym nucleus proprius columnae posterioris { database cross reference=NeuroNames:1633 , has synonym type=latin term }
nucleus proprius of spinal cord SubClassOf gray matter of spinal cord

New Class : auditory hillocks, pharyngeal arch 2 derived

auditory hillocks, pharyngeal arch 2 derived id UBERON:0016612
auditory hillocks, pharyngeal arch 2 derived SubClassOf endoderm-derived structure
auditory hillocks, pharyngeal arch 2 derived SubClassOf structure with developmental contribution from neural crest
auditory hillocks, pharyngeal arch 2 derived label auditory hillocks, pharyngeal arch 2 derived
auditory hillocks, pharyngeal arch 2 derived EquivalentTo anatomical cluster and part of some auditory hillocks and develops from some pharyngeal arch 2
auditory hillocks, pharyngeal arch 2 derived SubClassOf anatomical cluster
auditory hillocks, pharyngeal arch 2 derived SubClassOf embryonic structure
auditory hillocks, pharyngeal arch 2 derived SubClassOf part of some auditory hillocks
auditory hillocks, pharyngeal arch 2 derived SubClassOf develops from some pharyngeal arch 2
auditory hillocks, pharyngeal arch 2 derived definition A collection of protruberances derived from pharyngeal arch 2 that develop into the concha, antihelix and antitragus. { database cross reference=Pinna- Auricle }
auditory hillocks, pharyngeal arch 2 derived has obo namespace uberon

New Class : auditory hillocks, pharyngeal arch 1 derived

auditory hillocks, pharyngeal arch 1 derived has obo namespace uberon
auditory hillocks, pharyngeal arch 1 derived id UBERON:0016611
auditory hillocks, pharyngeal arch 1 derived definition A collection of protruberances derived from pharyngeal arch 1 that develop into the tragus, crus of the helix, and helix. { database cross reference=Pinna- Auricle }
auditory hillocks, pharyngeal arch 1 derived SubClassOf part of some auditory hillocks
auditory hillocks, pharyngeal arch 1 derived EquivalentTo anatomical cluster and part of some auditory hillocks and develops from some pharyngeal arch 1
auditory hillocks, pharyngeal arch 1 derived SubClassOf endoderm-derived structure
auditory hillocks, pharyngeal arch 1 derived SubClassOf embryonic structure
auditory hillocks, pharyngeal arch 1 derived SubClassOf structure with developmental contribution from neural crest
auditory hillocks, pharyngeal arch 1 derived label auditory hillocks, pharyngeal arch 1 derived
auditory hillocks, pharyngeal arch 1 derived SubClassOf anatomical cluster
auditory hillocks, pharyngeal arch 1 derived SubClassOf develops from some pharyngeal arch 1

New Class : parasphenoid flange

parasphenoid flange created by NI
parasphenoid flange SubClassOf mesoderm-derived structure
parasphenoid flange label parasphenoid flange
parasphenoid flange SubClassOf part of some parasphenoid
parasphenoid flange definition Lateral expansion of the parasphenoid. [PHENOSCAPE:BC]
parasphenoid flange SubClassOf skeletal element projection
parasphenoid flange SubClassOf ectoderm-derived structure
parasphenoid flange SubClassOf structure with developmental contribution from neural crest

Changed Class objects: 1426

Changes for: integumentary system layer

Added
- + integumentary system layer EquivalentTo organ component layer and part of some integumental system

Changes for: basibranchial element

Added
- + basibranchial element SubClassOf endoderm-derived structure

Changes for: chondroglossus muscle

Deleted
- - chondroglossus muscle SubClassOf ectoderm-derived structure
Added
- + chondroglossus muscle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: gular gland

Deleted
- - gular gland SubClassOf gland
Added
- + gular gland SubClassOf gland of integumental system

Changes for: velar skeleton

Added
- + velar skeleton SubClassOf endoderm-derived structure

Changes for: commissure of diencephalon

Deleted
- - commissure of diencephalon SubClassOf part of some diencephalic white matter

Changes for: coronoid bone

Added
- + coronoid bone SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: future upper lip

Added
- + future upper lip SubClassOf endo-epithelium

Changes for: lenticular process of incus

Added
- + lenticular process of incus SubClassOf endoderm-derived structure

Changes for: ceratohyal element

Added
- + ceratohyal element SubClassOf endoderm-derived structure

Changes for: hyomandibular element

Added
- + hyomandibular element SubClassOf endoderm-derived structure

Changes for: gingiva of lower jaw

Added
- + gingiva of lower jaw SubClassOf endoderm-derived structure

Changes for: stylohyoid bone

Added
- + stylohyoid bone SubClassOf endoderm-derived structure

Changes for: basihyal element

Added
- + basihyal element SubClassOf endoderm-derived structure

Changes for: hypohyal element

Added
- + hypohyal element SubClassOf endoderm-derived structure

Changes for: retroarticular process of the palatoquadrate

Added
- + retroarticular process of the palatoquadrate SubClassOf endoderm-derived structure

Changes for: ventral cleithrum

Deleted
- - ventral cleithrum comment According to Forey 1988, History of the Coelacanth fish:

“In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.”

Added
- + ventral cleithrum comment According to Forey 1988, History of the Coelacanth fish:

‘In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.’

Changes for: anterior process of the palatoquadrate

Added
- + anterior process of the palatoquadrate SubClassOf endoderm-derived structure

Changes for: dorsal cleithrum

Deleted
- - dorsal cleithrum comment According to Forey 1988, History of the Coelacanth fish:

Added
- + dorsal cleithrum comment According to Forey 1988, History of the Coelacanth fish:

Changes for: levator palatoquadrati

Added
- + levator palatoquadrati SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: adductor mandibulae

Added
- + adductor mandibulae SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: spiracularis muscle

Added
- + spiracularis muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: preorbitalis muscle

Added
- + preorbitalis muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: articular process of palatoquadrate

Added
- + articular process of palatoquadrate SubClassOf endoderm-derived structure

Changes for: thyrohyoid bone

Added
- + thyrohyoid bone SubClassOf endoderm-derived structure

Changes for: early premaxilla

Added
- + early premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: external cervical os

Deleted
- - external cervical os external definition The external orifice of the uterus (or ostium of uterus, or external os) is a small, depressed, somewhat circular aperture on the rounded extremity of the vaginal portion of the cervix. Through this aperture, the cervical cavity communicates with that of the vagina. The external orifice is bounded by two lips, an anterior and a posterior. The anterior is shorter and thicker, though it projects lower than the posterior because of the slope of the cervix. Normally, both lips are in contact with the posterior vaginal wall. Prior to pregnancy, the external orifice has a rounded shape when viewed through the vaginal canal (as through a speculum). Following parturition, the orifice takes on an appearance more like a transverse slit or is “H-shaped”[Wikipedia:External_orifice_of_the_uterus]. { source=http://en.wikipedia.org/wiki/External_orifice_of_the_uterus }
Added
- + external cervical os external definition The external orifice of the uterus (or ostium of uterus, or external os) is a small, depressed, somewhat circular aperture on the rounded extremity of the vaginal portion of the cervix. Through this aperture, the cervical cavity communicates with that of the vagina. The external orifice is bounded by two lips, an anterior and a posterior. The anterior is shorter and thicker, though it projects lower than the posterior because of the slope of the cervix. Normally, both lips are in contact with the posterior vaginal wall. Prior to pregnancy, the external orifice has a rounded shape when viewed through the vaginal canal (as through a speculum). Following parturition, the orifice takes on an appearance more like a transverse slit or is ‘H-shaped’[Wikipedia:External_orifice_of_the_uterus]. { source=http://en.wikipedia.org/wiki/External_orifice_of_the_uterus }

Changes for: basihyal lingual process

Added
- + basihyal lingual process SubClassOf endoderm-derived structure

Changes for: splenial bone

Added
- + splenial bone SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: prearticular bone

Added
- + prearticular bone SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: surangular bone

Added
- + surangular bone SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: spicule

Added
- + spicule SubClassOf endoderm-derived structure

Changes for: nucleus of spinal cord

Deleted
- - nucleus of spinal cord SubClassOf regional part of spinal cord

Changes for: processus triangularis of palatoquadrate cartilage

Added
- + processus triangularis of palatoquadrate cartilage SubClassOf endoderm-derived structure

Changes for: suboccular arch

Added
- + suboccular arch SubClassOf endoderm-derived structure

Changes for: acinus of parotid gland

Added
- + acinus of parotid gland SubClassOf endoderm-derived structure

Changes for: internal acoustic meatus

Added
- + internal acoustic meatus SubClassOf contributes to morphology of some internal ear

Changes for: aorta collagen fibril

Added
- + aorta collagen fibril SubClassOf contributes to morphology of some aorta tunica adventitia

Changes for: pulmonary collagen fibril

Added
- + pulmonary collagen fibril SubClassOf contributes to morphology of some lung

Changes for: tendon collagen fibril

Added
- + tendon collagen fibril SubClassOf contributes to morphology of some tendon

Changes for: corneal stroma collagen fibril

Added
- + corneal stroma collagen fibril SubClassOf contributes to morphology of some substantia propria of cornea

Changes for: body of tongue

Added
- + body of tongue SubClassOf endoderm-derived structure

Changes for: anterior uvea

Added
- + anterior uvea SubClassOf contributes to morphology of some anterior segment of eyeball
- + anterior uvea SubClassOf contributes to morphology of some uvea

Changes for: palatoquadrate arch

Added
- + palatoquadrate arch SubClassOf endoderm-derived structure

Changes for: angular bone

Added
- + angular bone SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pharyngeal arch cartilage

Added
- + pharyngeal arch cartilage SubClassOf develops from some pharyngeal arch
- + pharyngeal arch cartilage SubClassOf endoderm-derived structure

Changes for: acetabular depression

Deleted
- - acetabular depression definition Central, most concave portion of the acetabulum, which remains open. { database cross reference=AAO:LAP }
Added
- + acetabular depression definition The central, most concave portion of the acetabulum, which remains open. { database cross reference=AAO:LAP }

Changes for: lobule of lactiferous gland

Added
- + lobule of lactiferous gland SubClassOf contributes to morphology of some mammary gland

Changes for: ventral thalamus

Added
- + ventral thalamus SubClassOf contributes to morphology of some diencephalon

Changes for: epithelium of trachea

Added
- + epithelium of trachea SubClassOf contributes to morphology of some trachea

Changes for: lunule of nail

Deleted
- - lunule of nail SubClassOf organ component layer
Added
- + lunule of nail SubClassOf integumentary system layer

Changes for: habenula

Added
- + habenula SubClassOf contributes to morphology of some epithalamus

Changes for: pineal body

Added
- + pineal body SubClassOf contributes to morphology of some epithalamus

Changes for: subthalamic nucleus

Added
- + subthalamic nucleus SubClassOf contributes to morphology of some ventral thalamus

Changes for: optic tract

Added
- + optic tract SubClassOf contributes to morphology of some brain white matter

Changes for: tuberomammillary nucleus

Deleted
- - tuberomammillary nucleus SubClassOf regional part of lateral hypothalamic region
- - tuberomammillary nucleus SubClassOf regional part of posterior hypothalamic region

Changes for: lateral hypothalamic nucleus

Deleted
- - lateral hypothalamic nucleus SubClassOf regional part of lateral hypothalamic region

Changes for: dorsomedial nucleus of hypothalamus

Deleted
- - dorsomedial nucleus of hypothalamus SubClassOf regional part of intermediate hypothalamic region

Changes for: ventromedial nucleus of hypothalamus

Deleted
- - ventromedial nucleus of hypothalamus SubClassOf regional part of intermediate hypothalamic region

Changes for: arcuate nucleus of hypothalamus

Deleted
- - arcuate nucleus of hypothalamus SubClassOf regional part of intermediate hypothalamic region

Changes for: paraventricular nucleus of hypothalamus

Added
- + paraventricular nucleus of hypothalamus SubClassOf contributes to morphology of some hypothalamus

Changes for: lateral mammillary nucleus

Deleted
- - lateral mammillary nucleus SubClassOf regional part of posterior hypothalamic region

Changes for: medial mammillary nucleus

Deleted
- - medial mammillary nucleus SubClassOf regional part of posterior hypothalamic region

Changes for: obsolete olfactory basal cell

Deleted
- - obsolete olfactory basal cell comment Obsoleted as it had no definition or logical axiom beyond being placed as an “olfactory “epithelium”, which is incorrect for a cell (should be part of). If a definition is found we can rescuscitate this class.[UBERON:cjm]
Added
- + obsolete olfactory basal cell comment Obsoleted as it had no definition or logical axiom beyond being placed as an ‘olfactory ‘epithelium’, which is incorrect for a cell (should be part of). If a definition is found we can rescuscitate this class.[UBERON:cjm]

Changes for: central medial nucleus

Added
- + central medial nucleus SubClassOf contributes to morphology of some dorsal plus ventral thalamus

Changes for: paracentral nucleus

Added
- + paracentral nucleus SubClassOf contributes to morphology of some dorsal plus ventral thalamus

Changes for: lateral geniculate body

Added
- + lateral geniculate body SubClassOf contributes to morphology of some dorsal plus ventral thalamus

Changes for: paraventricular nucleus of thalamus

Added
- + paraventricular nucleus of thalamus SubClassOf contributes to morphology of some dorsal plus ventral thalamus

Changes for: parafascicular nucleus

Added
- + parafascicular nucleus SubClassOf contributes to morphology of some dorsal plus ventral thalamus

Changes for: medial geniculate body

Added
- + medial geniculate body SubClassOf contributes to morphology of some dorsal plus ventral thalamus

Changes for: supraoptic nucleus

Added
- + supraoptic nucleus SubClassOf contributes to morphology of some hypothalamus

Changes for: Verson’s gland

Added
- + Verson’s gland SubClassOf gland of integumental system

Changes for: superficial part of masseter muscle

Deleted
- - superficial part of masseter muscle SubClassOf mesoderm-derived structure
Added
- + superficial part of masseter muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: Ammon’s horn

Deleted
- - Ammon’s horn SubClassOf regional part of cerebral cortex
Added
- + Ammon’s horn SubClassOf regional part of telencephalon

Changes for: cartilage of bronchus

Added
- + cartilage of bronchus SubClassOf contributes to morphology of some bronchus

Changes for: white pulp of spleen

Added
- + white pulp of spleen SubClassOf contributes to morphology of some spleen

Changes for: neocortex

Added
- + neocortex SubClassOf contributes to morphology of some cerebral cortex

Changes for: dorsal hyoid arch skeleton

Added
- + dorsal hyoid arch skeleton SubClassOf endoderm-derived structure

Changes for: ventral hyoid arch skeleton

Added
- + ventral hyoid arch skeleton SubClassOf endoderm-derived structure

Changes for: medial habenular nucleus

Deleted
- - medial habenular nucleus SubClassOf regional part of epithalamus

Changes for: lateral habenular nucleus

Deleted
- - lateral habenular nucleus SubClassOf regional part of epithalamus

Changes for: supramammillary nucleus

Deleted
- - supramammillary nucleus SubClassOf regional part of posterior hypothalamic region

Changes for: epithelium of esophagus

Added
- + epithelium of esophagus SubClassOf contributes to morphology of some esophagus

Changes for: substance of tooth

Added
- + substance of tooth SubClassOf contributes to morphology of some calcareous tooth

Changes for: periarterial lymphatic sheath

Added
- + periarterial lymphatic sheath SubClassOf contributes to morphology of some white pulp of spleen

Changes for: olfactory epithelium

Added
- + olfactory epithelium SubClassOf contributes to morphology of some olfactory apparatus
- + olfactory epithelium SubClassOf contributes to morphology of some olfactory system

Changes for: reticular layer of dermis

Added
- + reticular layer of dermis SubClassOf contributes to morphology of some zone of skin

Changes for: papillary layer of dermis

Deleted
- - papillary layer of dermis SubClassOf organ component layer
Added
- + papillary layer of dermis SubClassOf composed primarily of some dense connective tissue
- + papillary layer of dermis SubClassOf integumentary system layer

Changes for: corneal endothelium

Added
- + corneal endothelium SubClassOf contributes to morphology of some cornea

Changes for: arteriole

Added
- + arteriole SubClassOf contributes to morphology of some artery

Changes for: crypt of lieberkuhn of large intestine

Added
- + crypt of lieberkuhn of large intestine SubClassOf contributes to morphology of some large intestine

Changes for: crypt of Lieberkuhn

Added
- + crypt of Lieberkuhn SubClassOf contributes to morphology of some intestinal mucosa
- + crypt of Lieberkuhn see also intervillus pockets

Changes for: central nervous system cell part cluster

Deleted
- - cell part cluster of neuraxis label cell part cluster of neuraxis
Added
- + central nervous system cell part cluster has exact synonym cell part cluster of neuraxis { database cross reference=FMA:83143 }
- + central nervous system cell part cluster label central nervous system cell part cluster

Changes for: nucleus of midbrain tectum

Deleted
- - nucleus of midbrain tectum SubClassOf regional part of midbrain tectum

Changes for: odontoids

Added
- + odontoids SubClassOf endoderm-derived structure

Changes for: quadrato-orbital commissure

Added
- + quadrato-orbital commissure SubClassOf endoderm-derived structure

Changes for: oral pontine reticular nucleus

Deleted
- - oral pontine reticular nucleus SubClassOf brain grey matter

Changes for: inferior central nucleus

Deleted
- - inferior central nucleus SubClassOf brain grey matter

Changes for: nucleus of pretectal area

Deleted
- - nucleus of pretectal area SubClassOf brain grey matter

Changes for: nucleus of optic tract

Deleted
- - nucleus of optic tract SubClassOf brain grey matter

Changes for: mammillothalamic tract of hypothalamus

Deleted
- - mammillothalamic tract of hypothalamus SubClassOf part of some white matter

Changes for: lacrimal gland

Added
- + lacrimal gland SubClassOf contributes to morphology of some lacrimal apparatus
- + lacrimal gland SubClassOf gland of integumental system

Changes for: tarsal gland

Added
- + tarsal gland SubClassOf contributes to morphology of some eyelid

Changes for: conjunctiva

Added
- + conjunctiva SubClassOf contributes to morphology of some anterior segment of eyeball

Changes for: sympathetic ganglion

Added
- + sympathetic ganglion SubClassOf contributes to morphology of some sympathetic nervous system

Changes for: parasympathetic ganglion

Added
- + parasympathetic ganglion SubClassOf contributes to morphology of some parasympathetic nervous system

Changes for: enteric ganglion

Added
- + enteric ganglion SubClassOf contributes to morphology of some enteric nervous system

Changes for: posterior segment of eyeball

Added
- + posterior segment of eyeball SubClassOf contributes to morphology of some camera-type eye

Changes for: epithelium of lens

Added
- + epithelium of lens SubClassOf contributes to morphology of some lens of camera-type eye

Changes for: anterior segment of eyeball

Added
- + anterior segment of eyeball SubClassOf contributes to morphology of some camera-type eye

Changes for: 1st arch maxillary ectoderm

Deleted
- - 1st arch maxillary ectoderm SubClassOf unilaminar epithelium
Added
- + 1st arch maxillary ectoderm SubClassOf endoderm of foregut
- + 1st arch maxillary ectoderm SubClassOf upper respiratory tract epithelium

Changes for: maxillary process ectoderm

Added
- + maxillary process ectoderm SubClassOf endo-epithelium

Changes for: vagina orifice

Added
- + vagina orifice SubClassOf contributes to morphology of some vagina

Changes for: diencephalon

Added
- + diencephalon SubClassOf contributes to morphology of some forebrain

Changes for: metencephalon

Added
- + metencephalon SubClassOf contributes to morphology of some hindbrain

Changes for: forebrain

Added
- + forebrain SubClassOf contributes to morphology of some brain

Changes for: midbrain

Added
- + midbrain SubClassOf contributes to morphology of some brain

Changes for: dorsal plus ventral thalamus

Added
- + dorsal plus ventral thalamus SubClassOf contributes to morphology of some diencephalon

Changes for: hypothalamus

Added
- + hypothalamus SubClassOf contributes to morphology of some diencephalon

Changes for: epithalamus

Added
- + epithalamus SubClassOf contributes to morphology of some diencephalon

Changes for: phrenic nerve

Added
- + phrenic nerve EquivalentTo nerve and supplies some diaphragm
- + phrenic nerve SubClassOf branching part of some nerve of cervical vertebra
- + phrenic nerve SubClassOf supplies some diaphragm

Changes for: olfactory tubercle

Added
- + olfactory tubercle SubClassOf contributes to morphology of some olfactory cortex

Changes for: nucleus accumbens

Added
- + nucleus accumbens SubClassOf contributes to morphology of some ventral striatum

Changes for: island of calleja

Added
- + island of calleja SubClassOf contributes to morphology of some olfactory tubercle

Changes for: trunk of phrenic nerve

Added
- + trunk of phrenic nerve SubClassOf spinal nerve trunk

Changes for: choroid plexus

Deleted
- - choroid plexus SubClassOf brain vasculature
Added
- + choroid plexus SubClassOf contributes to morphology of some brain ventricle/choroid plexus
- + choroid plexus SubClassOf vasculature of organ

Changes for: frontal cortex

Deleted
- - frontal cortex SubClassOf adjacent to some parietal lobe
- - frontal cortex SubClassOf adjacent to some temporal lobe
- - frontal cortex SubClassOf ectoderm-derived structure
- - frontal cortex SubClassOf organ part
- - frontal cortex SubClassOf part of some neocortex
- - frontal cortex SubClassOf structure with developmental contribution from neural crest
- - frontal cortex comment Editor note: Many species don’t have lobes but they do have frontal cortex. Lobe isn’t a really well defined term though [MM]
- - frontal cortex database cross reference BAMS:FL
- - frontal cortex database cross reference BAMS:Frontal_lobe
- - frontal cortex database cross reference BM:Tel-Cx-FR
- - frontal cortex database cross reference CALOHA:TS-0389
- - frontal cortex database cross reference EFO:0000913
- - frontal cortex database cross reference EV:0100167
- - frontal cortex database cross reference FMA:61824
- - frontal cortex database cross reference MAT:0000505
- - frontal cortex database cross reference MESH:A08.186.211.730.885.213.270
- - frontal cortex database cross reference NIF_GrossAnatomy:birnlex_928
- - frontal cortex database cross reference NeuroNames:56 { source=NIF_GrossAnatomy:birnlex_928 }
- - frontal cortex database cross reference OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA
- - frontal cortex database cross reference UMLS:C0016733 { source=NIF_GrossAnatomy:birnlex_928 }
- - frontal cortex database cross reference UMLS:C0016733 { source=ncithesaurus:Frontal_Lobe }
- - frontal cortex database cross reference UMLS:C1268977 { source=NIF_GrossAnatomy:birnlex_928 }
- - frontal cortex database cross reference http://linkedlifedata.com/resource/umls/id/C0016733
- - frontal cortex database cross reference http://linkedlifedata.com/resource/umls/id/C1268977
- - frontal cortex database cross reference http://www.snomedbrowser.com/Codes/Details/180920004
- - frontal cortex database cross reference ncithesaurus:Frontal_Lobe
- - frontal cortex depicted by http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray729.png/200px-Gray729.png
- - frontal cortex has exact synonym frontal lobe { database cross reference=FMA:61824 }
- - frontal cortex has exact synonym frontal region
- - frontal cortex has exact synonym regio frontalis { database cross reference=FMA:61824 , database cross reference=FMA:TA , has synonym type=latin term }
- - frontal cortex has related synonym lobi frontales { database cross reference=NeuroNames:56 , has synonym type=latin term }
- - frontal cortex has related synonym lobus frontalis { database cross reference=http://en.wikipedia.org/wiki/Frontal_lobe , has synonym type=latin term }
Added
- + frontal cortex EquivalentTo cerebral hemisphere grey matter and part of some frontal lobe
- + frontal cortex SubClassOf cortex of cerebral lobe
- + frontal cortex SubClassOf part of some frontal lobe
- + frontal cortex database cross reference FMA:242199
- + frontal cortex has broad synonym frontal lobe
- + frontal cortex has exact synonym cortex of frontal lobe { database cross reference=FMA:242199 }
- + frontal cortex has exact synonym frontal lobe cortex { database cross reference=FMA:242199 }
- + frontal cortex has exact synonym gray matter of frontal lobe { database cross reference=FMA:242199 }
- + frontal cortex has exact synonym grey matter of frontal lobe

Changes for: parietal lobe

Deleted
- - parietal lobe SubClassOf cerebral cortex lobe
- - parietal lobe SubClassOf organ part
- - parietal lobe SubClassOf part of some neocortex
- - parietal lobe has exact synonym parietal cortex
- - parietal lobe has exact synonym parietal neocortex { database cross reference=DHB:PCx }
- - parietal lobe has exact synonym parietal region
Added
- + parietal lobe SubClassOf contributes to morphology of some telencephalon
- + parietal lobe SubClassOf lobe of cerebral hemisphere
- + parietal lobe has broad synonym parietal region
- + parietal lobe has narrow synonym parietal cortex
- + parietal lobe has narrow synonym parietal neocortex { database cross reference=DHB:PCx }

Changes for: temporal lobe

Deleted
- - temporal lobe SubClassOf cerebral cortex lobe
- - temporal lobe SubClassOf organ part
- - temporal lobe SubClassOf part of some neocortex
- - temporal lobe has exact synonym temporal cortex
- - temporal lobe has exact synonym temporal neocortex { database cross reference=DHB:TCx }
Added
- + temporal lobe SubClassOf contributes to morphology of some telencephalon
- + temporal lobe SubClassOf lobe of cerebral hemisphere
- + temporal lobe has narrow synonym temporal cortex
- + temporal lobe has narrow synonym temporal neocortex { database cross reference=DHB:TCx }

Changes for: putamen

Added
- + putamen SubClassOf contributes to morphology of some caudate-putamen

Changes for: caudate nucleus

Added
- + caudate nucleus SubClassOf contributes to morphology of some caudate-putamen

Changes for: globus pallidus

Added
- + globus pallidus SubClassOf contributes to morphology of some collection of basal ganglia

Changes for: amygdala

Deleted
- - amygdala SubClassOf cerebral hemisphere grey matter
Added
- + amygdala SubClassOf cortex of temporal lobe

Changes for: scala vestibuli

Added
- + scala vestibuli SubClassOf contributes to morphology of some cochlea

Changes for: synovial membrane of synovial tendon sheath

Deleted
- - synovial membrane of synovial tendon sheath SubClassOf part of some tendon sheath
Added
- + synovial membrane of synovial tendon sheath EquivalentTo layer of synovial tissue and bounding layer of some tendon sheath
- + synovial membrane of synovial tendon sheath SubClassOf bounding layer of some tendon sheath

Changes for: fibrous membrane of synovial tendon sheath

Deleted
- - fibrous membrane of synovial tendon sheath SubClassOf part of some tendon sheath
Added
- + fibrous membrane of synovial tendon sheath SubClassOf bounding layer of some tendon sheath

Changes for: scala tympani

Added
- + scala tympani SubClassOf contributes to morphology of some cochlea

Changes for: cartilaginous external acoustic tube

Added
- + cartilaginous external acoustic tube SubClassOf endoderm-derived structure

Changes for: auricular cartilage

Added
- + auricular cartilage SubClassOf structure with developmental contribution from neural crest

Changes for: lobule of pinna

Added
- + lobule of pinna SubClassOf contributes to morphology of some external ear
- + lobule of pinna SubClassOf structure with developmental contribution from neural crest

Changes for: internal ear

Added
- + internal ear database cross reference http://www.snomedbrowser.com/Codes/Details/304982002

Changes for: cochlea

Added
- + cochlea SubClassOf contributes to morphology of some internal ear

Changes for: parotid gland

Added
- + parotid gland SubClassOf endoderm-derived structure

Changes for: upper lip

Added
- + upper lip SubClassOf endoderm-derived structure

Changes for: lip

Added
- + lip SubClassOf contributes to morphology of some mouth

Changes for: lower lip

Added
- + lower lip SubClassOf endoderm-derived structure

Changes for: sublingual duct

Added
- + sublingual duct SubClassOf contributes to morphology of some sublingual gland

Changes for: duct of salivary gland

Added
- + duct of salivary gland SubClassOf contributes to morphology of some salivary gland

Changes for: nasal cavity mucosa

Deleted
- - nasal cavity mucosa EquivalentTo mucosa and part of some olfactory apparatus
- - nasal cavity mucosa SubClassOf part of some olfactory apparatus
Added
- + nasal cavity mucosa EquivalentTo mucosa and part of some olfactory apparatus chamber
- + nasal cavity mucosa SubClassOf part of some olfactory apparatus chamber

Changes for: paranasal sinus

Added
- + paranasal sinus SubClassOf contributes to morphology of some respiratory system

Changes for: extrinsic tongue pre-muscle mass

Deleted
- - extrinsic tongue pre-muscle mass SubClassOf mesoderm-derived structure
Added
- + extrinsic tongue pre-muscle mass SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: superior laryngeal nerve

Added
- + superior laryngeal nerve SubClassOf endoderm-derived structure

Changes for: outer limiting layer of retina

Added
- + outer limiting layer of retina SubClassOf contributes to morphology of some retina

Changes for: outer nuclear layer of retina

Added
- + outer nuclear layer of retina SubClassOf contributes to morphology of some retinal neural layer

Changes for: masseteric fossa

Deleted
- - masseteric fossa SubClassOf mesoderm-derived structure
Added
- + masseteric fossa SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: anterior subdivision of masseter

Deleted
- - anterior subdivision of masseter SubClassOf mesoderm-derived structure
Added
- + anterior subdivision of masseter SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: posterior subdivision of masseter

Deleted
- - posterior subdivision of masseter SubClassOf mesoderm-derived structure
Added
- + posterior subdivision of masseter SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: spinal nerve

Added
- + spinal nerve EquivalentTo nerve and continuous with some spinal cord

Changes for: layer of retina

Added
- + layer of retina SubClassOf contributes to morphology of some retina

Changes for: gray matter of telencephalon

Deleted
- - gray matter of telencephalon definition A portion of gray matter of neuraxis that is part of a telencephalon. { database cross reference=OBOL:automatic }
Added
- + gray matter of telencephalon definition A portion of gray matter that is part of a telencephalon. { database cross reference=OBOL:automatic }

Changes for: body of mandible

Deleted
- - body of mandible SubClassOf mesoderm-derived structure
Added
- + body of mandible SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pars reflexa of masseter

Deleted
- - pars reflexa of masseter SubClassOf mesoderm-derived structure
Added
- + pars reflexa of masseter SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: aqueous humor of eyeball

Added
- + aqueous humor of eyeball SubClassOf contributes to morphology of some anterior chamber of eyeball

Changes for: inner limiting layer of retina

Added
- + inner limiting layer of retina SubClassOf contributes to morphology of some retina

Changes for: inner plexiform layer of retina

Added
- + inner plexiform layer of retina SubClassOf contributes to morphology of some retinal neural layer

Changes for: ganglionic layer of retina

Added
- + ganglionic layer of retina SubClassOf contributes to morphology of some retinal neural layer

Changes for: nerve fiber layer of retina

Added
- + nerve fiber layer of retina SubClassOf contributes to morphology of some retinal neural layer

Changes for: outer plexiform layer of retina

Added
- + outer plexiform layer of retina SubClassOf contributes to morphology of some retinal neural layer

Changes for: inner nuclear layer of retina

Added
- + inner nuclear layer of retina SubClassOf contributes to morphology of some retinal neural layer

Changes for: prehallux skeleton

Deleted
- - prehallux skeleton provenance notes This class was sourced from an external ontology (amphibian_anatomy). It was modified by cjm in the following way: the class was relabeled from “prepollex” to “prepollex skeleton”, to distinguish it from the digit-like structure which it is a part of. It was re-classified from “bone” to “subdivision of skeleton”, as it may in fact be composed of multiple individual bones. TODO: definition needs reviewed, and it still requires placement under the UBERON:0012136 ! prehallux
Added
- + prehallux skeleton provenance notes This class was sourced from an external ontology (amphibian_anatomy). It was modified by cjm in the following way: the class was relabeled from ‘prepollex’ to ‘prepollex skeleton’, to distinguish it from the digit-like structure which it is a part of. It was re-classified from bone to subdivision of skeleton, as it may in fact be composed of multiple individual bones. TODO: definition needs reviewed, and it still requires placement under the UBERON:0012136 ! prehallux

Changes for: hypobranchial II

Added
- + hypobranchial II SubClassOf endoderm-derived structure

Changes for: basihyal

Added
- + basihyal SubClassOf endoderm-derived structure

Changes for: hypobranchial I

Added
- + hypobranchial I SubClassOf endoderm-derived structure

Changes for: ceratobranchial I

Added
- + ceratobranchial I SubClassOf endoderm-derived structure

Changes for: posterior radial

Added
- + posterior radial SubClassOf endoderm-derived structure

Changes for: ceratobranchials II–IV

Added
- + ceratobranchials II–IV SubClassOf endoderm-derived structure

Changes for: os triangulare

Added
- + os triangulare SubClassOf endoderm-derived structure

Changes for: anterior radial

Added
- + anterior radial SubClassOf endoderm-derived structure

Changes for: angulosplenial

Added
- + angulosplenial SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: cloacal epithelium

Added
- + cloacal epithelium database cross reference ZFA:0005783

Changes for: tunica fibrosa of eyeball

Added
- + tunica fibrosa of eyeball database cross reference http://www.snomedbrowser.com/Codes/Details/361318005

Changes for: palatine raphe

Added
- + palatine raphe SubClassOf endoderm-derived structure

Changes for: lacrimal apparatus

Added
- + lacrimal apparatus SubClassOf contributes to morphology of some camera-type eye

Changes for: middle ear

Added
- + middle ear SubClassOf contributes to morphology of some ear

Changes for: pinna

Added
- + pinna SubClassOf develops from some auditory hillocks
- + pinna SubClassOf structure with developmental contribution from neural crest

Changes for: sclera

Added
- + sclera SubClassOf contributes to morphology of some camera-type eye

Changes for: corneal epithelium

Added
- + corneal epithelium SubClassOf contributes to morphology of some cornea

Changes for: ciliary body

Added
- + ciliary body SubClassOf contributes to morphology of some anterior uvea

Changes for: pupil

Added
- + pupil SubClassOf contributes to morphology of some iris

Changes for: optic choroid

Added
- + optic choroid SubClassOf contributes to morphology of some uvea

Changes for: substantia propria of cornea

Added
- + substantia propria of cornea SubClassOf contributes to morphology of some cornea

Changes for: iris stroma

Added
- + iris stroma SubClassOf contributes to morphology of some iris

Changes for: future foramen cecum

Deleted
- - future foramen cecum SubClassOf developing anatomical structure
Added
- + future foramen cecum SubClassOf pit

Changes for: iris

Added
- + iris SubClassOf contributes to morphology of some anterior uvea

Changes for: posterior chamber of eyeball

Added
- + posterior chamber of eyeball SubClassOf contributes to morphology of some anterior segment of eyeball

Changes for: uvea

Added
- + uvea SubClassOf contributes to morphology of some camera-type eye

Changes for: mammary duct

Added
- + mammary duct SubClassOf contributes to morphology of some mammary gland

Changes for: anterior chamber of eyeball

Added
- + anterior chamber of eyeball SubClassOf contributes to morphology of some anterior segment of eyeball

Changes for: eyelid

Added
- + eyelid SubClassOf contributes to morphology of some camera-type eye

Changes for: lower jaw region

Added
- + lower jaw region SubClassOf endoderm-derived structure

Changes for: secondary palate

Added
- + secondary palate SubClassOf endoderm-derived structure

Changes for: nasal septum

Added
- + nasal septum SubClassOf contributes to morphology of some olfactory apparatus

Changes for: larynx

Added
- + larynx SubClassOf contributes to morphology of some respiratory system

Changes for: submandibular gland

Added
- + submandibular gland SubClassOf endoderm-derived structure

Changes for: laryngeal cartilage

Deleted
- - laryngeal cartilage SubClassOf endoderm-derived structure

Changes for: soft palate

Added
- + soft palate SubClassOf endoderm-derived structure

Changes for: pharyngeal tonsil

Added
- + pharyngeal tonsil SubClassOf contributes to morphology of some tonsillar ring

Changes for: palatine uvula

Added
- + palatine uvula SubClassOf endoderm-derived structure

Changes for: cochlear nucleus

Deleted
- - cochlear nucleus SubClassOf regional part of cochlear nuclear complex
Added
- + cochlear nucleus SubClassOf contributes to morphology of some brainstem

Changes for: oropharynx

Added
- + oropharynx SubClassOf contributes to morphology of some chordate pharynx

Changes for: nasopharynx

Added
- + nasopharynx SubClassOf contributes to morphology of some chordate pharynx

Changes for: taste bud

Added
- + taste bud SubClassOf contributes to morphology of some gustatory system

Changes for: papilla of tongue

Added
- + papilla of tongue SubClassOf endoderm-derived structure

Changes for: tongue

Added
- + tongue SubClassOf contributes to morphology of some digestive system
- + tongue SubClassOf endoderm-derived structure

Changes for: cerebral vein

Added
- + cerebral vein SubClassOf brain blood vessel
- + cerebral vein SubClassOf part of some telencephalon
- + cerebral vein SubClassOf structure with developmental contribution from neural crest

Changes for: inferior cerebral vein

Deleted
- - inferior cerebral vein comment This class was created automatically from a combination of ontologies
Added
- + inferior cerebral vein has related synonym small cerebral vein

Changes for: ethmoid bone

Added
- + ethmoid bone SubClassOf contributes to morphology of some facial skeleton

Changes for: lacrimal bone

Added
- + lacrimal bone SubClassOf contributes to morphology of some facial skeleton

Changes for: nasal bone

Added
- + nasal bone SubClassOf contributes to morphology of some facial skeleton

Changes for: palatine bone

Added
- + palatine bone SubClassOf contributes to morphology of some facial skeleton

Changes for: jugal bone

Added
- + jugal bone SubClassOf contributes to morphology of some facial skeleton

Changes for: mandible

Added
- + mandible SubClassOf contributes to morphology of some jaw skeleton

Changes for: hyoid bone

Added
- + hyoid bone SubClassOf endoderm-derived structure

Changes for: auditory ossicle

Added
- + auditory ossicle SubClassOf contributes to morphology of some middle ear
- + auditory ossicle SubClassOf endoderm-derived structure

Changes for: stapes bone

Deleted
- - stapes bone SubClassOf endoderm-derived structure

Changes for: external ear

Added
- + external ear SubClassOf contributes to morphology of some ear
- + external ear SubClassOf contributes to morphology of some head

Changes for: squamous part of temporal bone

Added
- + squamous part of temporal bone SubClassOf contributes to morphology of some temporal bone

Changes for: branchial arch skeleton

Added
- + branchial arch skeleton SubClassOf endoderm-derived structure

Changes for: supramarginal gyrus

Added
- + supramarginal gyrus SubClassOf contributes to morphology of some parietal lobe

Changes for: abducens nucleus

Deleted
- - abducens nucleus SubClassOf regional part of metencephalon
Added
- + abducens nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: nucleus raphe obscurus

Deleted
- - nucleus raphe obscurus SubClassOf regional part of medullary raphe nuclear complex

Changes for: diagonal sulcus

Deleted
- - diagonal sulcus SubClassOf cerebral cortex lobe
- - diagonal sulcus SubClassOf sulcus of brain
Added
- + diagonal sulcus SubClassOf frontal sulcus
- + diagonal sulcus SubClassOf part of some frontal cortex
- + diagonal sulcus SubClassOf subarachnoid sulcus

Changes for: medullary raphe nuclear complex

Added
- + medullary raphe nuclear complex SubClassOf nuclear complex of neuraxis

Changes for: dorsolateral fasciculus of medulla

Deleted
- - dorsolateral fasciculus of medulla SubClassOf white matter of medulla oblongata
Added
- + dorsolateral fasciculus of medulla SubClassOf structure with developmental contribution from neural crest
- + dorsolateral fasciculus of medulla SubClassOf tract of brain

Changes for: decussation of medial lemniscus

Deleted
- - decussation of medial lemniscus SubClassOf white matter of medulla oblongata
Added
- + decussation of medial lemniscus SubClassOf structure with developmental contribution from neural crest

Changes for: cuneocerebellar tract

Deleted
- - cuneocerebellar tract SubClassOf part of some medulla oblongata
- - cuneocerebellar tract SubClassOf part of some white matter
Added
- + cuneocerebellar tract SubClassOf part of some white matter of medulla oblongata

Changes for: motor nucleus of trigeminal nerve

Deleted
- - motor nucleus of trigeminal nerve SubClassOf brain grey matter
- - motor nucleus of trigeminal nerve SubClassOf regional part of metencephalon
Added
- + motor nucleus of trigeminal nerve SubClassOf contributes to morphology of some pons
- + motor nucleus of trigeminal nerve SubClassOf structure with developmental contribution from neural crest

Changes for: cerebral crus

Deleted
- - cerebral crus SubClassOf part of some brainstem white matter
- - cerebral crus SubClassOf regional part of midbrain
Added
- + cerebral crus SubClassOf white matter of midbrain

Changes for: medial pes lemniscus

Added
- + medial pes lemniscus SubClassOf white matter of midbrain

Changes for: mesencephalic tract of trigeminal nerve

Deleted
- - mesencephalic tract of trigeminal nerve SubClassOf brainstem white matter
Added
- + mesencephalic tract of trigeminal nerve SubClassOf tract of brain

Changes for: supracallosal gyrus

Deleted
- - supracallosal gyrus SubClassOf cerebral cortex lobe
Added
- + supracallosal gyrus SubClassOf part of some limbic lobe

Changes for: medial lemniscus of midbrain

Deleted
- - medial lemniscus of midbrain SubClassOf brainstem white matter
- - medial lemniscus of midbrain SubClassOf regional part of midbrain tegmentum
Added
- + medial lemniscus of midbrain SubClassOf structure with developmental contribution from neural crest

Changes for: superior medullary velum

Deleted
- - superior medullary velum SubClassOf regional part of cerebellar white matter
Added
- + superior medullary velum SubClassOf brain white matter
- + superior medullary velum SubClassOf part of some cerebellum
- + superior medullary velum SubClassOf structure with developmental contribution from neural crest

Changes for: periamygdaloid area

Deleted
- - periamygdaloid area SubClassOf cerebral hemisphere grey matter
Added
- + periamygdaloid area SubClassOf cortex of temporal lobe

Changes for: paralaminar part of medial dorsal nucleus

Deleted
- - paralaminar part of medial dorsal nucleus SubClassOf gray matter of neuraxis
Added
- + paralaminar part of medial dorsal nucleus SubClassOf brain grey matter
- + paralaminar part of medial dorsal nucleus SubClassOf part of some medial dorsal nucleus of thalamus

Changes for: gracile fasciculus of medulla

Deleted
- - gracile fasciculus of medulla SubClassOf fasciculus of brain
- - gracile fasciculus of medulla has exact synonym gracile fascicle (Gall) { database cross reference=NIF_GrossAnatomy:birnlex_1282 }
- - gracile fasciculus of medulla has exact synonym tract of Gall
Added
- + gracile fasciculus of medulla has related synonym gracile fascicle (Gall) { database cross reference=NIF_GrossAnatomy:birnlex_1282 }
- + gracile fasciculus of medulla has related synonym tract of Gall

Changes for: choroid plexus vascular circuit

Deleted
- - choroid plexus vascular circuit SubClassOf brain vasculature
Added
- + choroid plexus vascular circuit SubClassOf vasculature of brain

Changes for: facial nerve muscle

Added
- + facial nerve muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: orbicularis oculi

Added
- + orbicularis oculi SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: inferior olivary commissure

Deleted
- - inferior olivary commissure SubClassOf white matter of medulla oblongata
Added
- + inferior olivary commissure SubClassOf brain commissure
- + inferior olivary commissure SubClassOf part of some brainstem white matter
- + inferior olivary commissure SubClassOf structure with developmental contribution from neural crest

Changes for: muscle of larynx

Added
- + muscle of larynx SubClassOf contributes to morphology of some larynx
- + muscle of larynx SubClassOf contributes to morphology of some musculature

Changes for: auricular muscle

Added
- + auricular muscle SubClassOf structure with developmental contribution from neural crest

Changes for: depressor labii inferioris

Deleted
- - depressor labii inferioris SubClassOf ectoderm-derived structure
Added
- + depressor labii inferioris SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
- + depressor labii inferioris SubClassOf skin muscle

Changes for: kidney collecting duct epithelium

Added
- + kidney collecting duct epithelium SubClassOf contributes to morphology of some collecting duct of renal tubule

Changes for: lateral process of malleus

Added
- + lateral process of malleus SubClassOf endoderm-derived structure

Changes for: future superior salivatory nucleus

Deleted
- - future superior salivatory nucleus definition A gray matter of neuraxis that has_potential_to_develop_into a superior salivatory nucleus. { database cross reference=OBOL:automatic }
Added
- + future superior salivatory nucleus definition A gray matter that has_potential_to_develop_into a superior salivatory nucleus. { database cross reference=OBOL:automatic }

Changes for: future nucleus ambiguus

Deleted
- - future nucleus ambiguus definition A gray matter of neuraxis that has_potential_to_develop_into a nucleus ambiguus. { database cross reference=OBOL:automatic }
Added
- + future nucleus ambiguus definition A gray matter that has_potential_to_develop_into a nucleus ambiguus. { database cross reference=OBOL:automatic }

Changes for: future dorsal motor nucleus of vagus

Deleted
- - future dorsal motor nucleus of vagus definition A gray matter of neuraxis that has_potential_to_develop_into a dorsal motor nucleus of vagus nerve. { database cross reference=OBOL:automatic }
Added
- + future dorsal motor nucleus of vagus definition A gray matter that has_potential_to_develop_into a dorsal motor nucleus of vagus nerve. { database cross reference=OBOL:automatic }

Changes for: future inferior salivatory nucleus

Deleted
- - future inferior salivatory nucleus definition A gray matter of neuraxis that has_potential_to_develop_into a inferior salivatory nucleus. { database cross reference=OBOL:automatic }
Added
- + future inferior salivatory nucleus definition A gray matter that has_potential_to_develop_into a inferior salivatory nucleus. { database cross reference=OBOL:automatic }

Changes for: future facial nucleus

Deleted
- - future facial nucleus definition A gray matter of neuraxis that has_potential_to_develop_into a facial nucleus. { database cross reference=OBOL:automatic }
Added
- + future facial nucleus definition A gray matter that has_potential_to_develop_into a facial nucleus. { database cross reference=OBOL:automatic }

Changes for: hindlimb zeugopod

Added
- + hindlimb zeugopod SubClassOf contributes to morphology of some hindlimb

Changes for: forelimb stylopod

Added
- + forelimb stylopod SubClassOf contributes to morphology of some forelimb

Changes for: mouth mucosa

Added
- + mouth mucosa SubClassOf contributes to morphology of some digestive system

Changes for: ventral part of pharyngeal pouch 2

Deleted
- - ventral part of pharyngeal pouch 2 SubClassOf endo-epithelium
- - ventral part of pharyngeal pouch 2 SubClassOf unilaminar epithelium
Added
- + ventral part of pharyngeal pouch 2 SubClassOf endoderm of foregut
- + ventral part of pharyngeal pouch 2 SubClassOf upper respiratory tract epithelium

Changes for: dorsal part of pharyngeal pouch 3

Deleted
- - dorsal part of pharyngeal pouch 3 SubClassOf endo-epithelium
- - dorsal part of pharyngeal pouch 3 SubClassOf unilaminar epithelium
Added
- + dorsal part of pharyngeal pouch 3 SubClassOf endoderm of foregut
- + dorsal part of pharyngeal pouch 3 SubClassOf upper respiratory tract epithelium

Changes for: ventral part of pharyngeal pouch 1

Deleted
- - ventral part of pharyngeal pouch 1 SubClassOf endo-epithelium
- - ventral part of pharyngeal pouch 1 SubClassOf unilaminar epithelium
Added
- + ventral part of pharyngeal pouch 1 SubClassOf endoderm of foregut
- + ventral part of pharyngeal pouch 1 SubClassOf upper respiratory tract epithelium

Changes for: dorsal part of pharyngeal pouch 2

Deleted
- - dorsal part of pharyngeal pouch 2 SubClassOf endo-epithelium
- - dorsal part of pharyngeal pouch 2 SubClassOf unilaminar epithelium
Added
- + dorsal part of pharyngeal pouch 2 SubClassOf endoderm of foregut
- + dorsal part of pharyngeal pouch 2 SubClassOf upper respiratory tract epithelium

Changes for: dorsal part of pharyngeal pouch 1

Deleted
- - dorsal part of pharyngeal pouch 1 SubClassOf endo-epithelium
- - dorsal part of pharyngeal pouch 1 SubClassOf unilaminar epithelium
Added
- + dorsal part of pharyngeal pouch 1 SubClassOf endoderm of foregut
- + dorsal part of pharyngeal pouch 1 SubClassOf upper respiratory tract epithelium

Changes for: pars externa plectri

Added
- + pars externa plectri SubClassOf endoderm-derived structure

Changes for: pars articularis of mandibular arch

Added
- + pars articularis of mandibular arch SubClassOf endoderm-derived structure

Changes for: pars dentalis of maxilla

Deleted
- - pars dentalis of maxilla SubClassOf mesoderm-derived structure
Added
- + pars dentalis of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pars dentalis of premaxilla

Deleted
- - pars dentalis of premaxilla SubClassOf mesoderm-derived structure
Added
- + pars dentalis of premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: dorsal part of pharyngeal pouch 5

Deleted
- - dorsal part of pharyngeal pouch 5 SubClassOf endo-epithelium
- - dorsal part of pharyngeal pouch 5 SubClassOf unilaminar epithelium
Added
- + dorsal part of pharyngeal pouch 5 SubClassOf endoderm of foregut
- + dorsal part of pharyngeal pouch 5 SubClassOf upper respiratory tract epithelium

Changes for: ventral part of pharyngeal pouch 4

Deleted
- - ventral part of pharyngeal pouch 4 SubClassOf endo-epithelium
- - ventral part of pharyngeal pouch 4 SubClassOf unilaminar epithelium
Added
- + ventral part of pharyngeal pouch 4 SubClassOf endoderm of foregut
- + ventral part of pharyngeal pouch 4 SubClassOf upper respiratory tract epithelium

Changes for: dorsal part of pharyngeal pouch 4

Deleted
- - dorsal part of pharyngeal pouch 4 SubClassOf endo-epithelium
- - dorsal part of pharyngeal pouch 4 SubClassOf unilaminar epithelium
Added
- + dorsal part of pharyngeal pouch 4 SubClassOf endoderm of foregut
- + dorsal part of pharyngeal pouch 4 SubClassOf upper respiratory tract epithelium

Changes for: ventral part of pharyngeal pouch 3

Deleted
- - ventral part of pharyngeal pouch 3 SubClassOf endo-epithelium
- - ventral part of pharyngeal pouch 3 SubClassOf unilaminar epithelium
Added
- + ventral part of pharyngeal pouch 3 SubClassOf endoderm of foregut
- + ventral part of pharyngeal pouch 3 SubClassOf upper respiratory tract epithelium

Changes for: lower beak

Added
- + lower beak SubClassOf endoderm-derived structure

Changes for: entire pharyngeal arch associated mesenchyme

Added
- + entire pharyngeal arch associated mesenchyme SubClassOf endoderm-derived structure

Changes for: ventral part of pharyngeal pouch 5

Deleted
- - ventral part of pharyngeal pouch 5 SubClassOf endo-epithelium
- - ventral part of pharyngeal pouch 5 SubClassOf unilaminar epithelium
Added
- + ventral part of pharyngeal pouch 5 SubClassOf endoderm of foregut
- + ventral part of pharyngeal pouch 5 SubClassOf upper respiratory tract epithelium

Changes for: anterior part of tongue

Added
- + anterior part of tongue SubClassOf endoderm-derived structure

Changes for: posterior part of tongue

Added
- + posterior part of tongue SubClassOf endoderm-derived structure

Changes for: tympanic membrane epithelium

Added
- + tympanic membrane epithelium SubClassOf endo-epithelium

Changes for: lingual artery

Deleted
- - lingual artery SubClassOf ectoderm-derived structure
Added
- + lingual artery SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: central tegmental tract

Deleted
- - central tegmental tract SubClassOf part of some white matter

Changes for: ansa lenticularis

Deleted
- - ansa lenticularis SubClassOf part of some diencephalic white matter
- - ansa lenticularis SubClassOf regional part of diencephalon
- - ansa lenticularis SubClassOf regional part of telencephalon
Added
- + ansa lenticularis SubClassOf diencephalic white matter

Changes for: middle cerebral artery

Added
- + middle cerebral artery database cross reference BTO:0005206

Changes for: auditory meatus epithelium

Added
- + auditory meatus epithelium SubClassOf endo-epithelium

Changes for: alveolar wall

Added
- + alveolar wall SubClassOf contributes to morphology of some alveolus of lung

Changes for: right lung accessory lobe

Added
- + right lung accessory lobe SubClassOf contributes to morphology of some right lung

Changes for: otic process

Added
- + otic process SubClassOf endoderm-derived structure

Changes for: otic plate of pterygoid

Deleted
- - otic plate of pterygoid SubClassOf mesoderm-derived structure
Added
- + otic plate of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: otic ligament

Added
- + otic ligament SubClassOf endoderm-derived structure

Changes for: vestibulocochlear nerve

Deleted
- - vestibulocochlear nerve comment This class was created automatically from a combination of ontologies
- - vestibulocochlear nerve definition Cranial nerve that runs to the ear. { database cross reference=http://en.wikipedia.org/wiki/Vestibulocochlear_nerve , database cross reference=ISBN:0471209627 }
- - vestibulocochlear nerve has exact synonym acoustic nerve
Added
- + vestibulocochlear nerve definition Cranial nerve that transmits sound and equilibrium (balance) information from the inner ear to the brain. { database cross reference=http://en.wikipedia.org/wiki/Vestibulocochlear_nerve , database cross reference=ISBN:0471209627 }
- + vestibulocochlear nerve has exact synonym acoustic nerve { database cross reference=FMA:50869 }

Changes for: palatine process of the pars facialis of the maxilla

Deleted
- - palatine process of the pars facialis of the maxilla SubClassOf mesoderm-derived structure
Added
- + palatine process of the pars facialis of the maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: palatine process of pars palatina of premaxilla

Deleted
- - palatine process of pars palatina of premaxilla SubClassOf mesoderm-derived structure
Added
- + palatine process of pars palatina of premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: layer of tympanic membrane

Added
- + layer of tympanic membrane SubClassOf endoderm-derived structure

Changes for: submental vein

Deleted
- - submental vein SubClassOf ectoderm-derived structure
Added
- + submental vein SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: hypoglossal nerve

Deleted
- - hypoglossal nerve comment This class was created automatically from a combination of ontologies
- - hypoglossal nerve definition Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue. { database cross reference=http://en.wikipedia.org/wiki/Hypoglossal_nerve , database cross reference=GO:0021566 }
Added
- + hypoglossal nerve EquivalentTo cranial nerve and innervates some tongue muscle
- + hypoglossal nerve SubClassOf innervates some genioglossus muscle
- + hypoglossal nerve SubClassOf innervates some hyoglossus muscle
- + hypoglossal nerve SubClassOf innervates some tongue muscle
- + hypoglossal nerve comment AO notes: we use a broad definition of cranial nerve that encompasses the amphibian predecessor of true amniote hypoglossal nerves
- + hypoglossal nerve definition Cranial nerve that innervates the muscles of the tongue. { database cross reference=ISBN:080184780X , database cross reference=UBERON:cjm , database cross reference=VHOG:0000693 }
- + hypoglossal nerve dubious for taxon http://purl.obolibrary.org/obo/NCBITaxon_8292
- + hypoglossal nerve external definition In amphibians, represents the hypoglossal nerve in amniotes. Innverates mm. geniohyoideus, genioglossus, hyoglossus, rectus cervicis { source=ISBN:080184780X }

Changes for: palatoquadrate articular process

Added
- + palatoquadrate articular process SubClassOf endoderm-derived structure

Changes for: premammillary nucleus

Deleted
- - premammillary nucleus SubClassOf regional part of posterior hypothalamic region

Changes for: spino-olivary tract

Deleted
- - spino-olivary tract SubClassOf part of some medulla oblongata
- - spino-olivary tract SubClassOf part of some white matter
Added
- + spino-olivary tract SubClassOf part of some white matter of medulla oblongata

Changes for: mammillary peduncle

Added
- + mammillary peduncle SubClassOf peduncle of neuraxis

Changes for: mammillary princeps fasciculus

Deleted
- - mammillary princeps fasciculus SubClassOf white matter
Added
- + mammillary princeps fasciculus SubClassOf part of some posterior hypothalamic region
- + mammillary princeps fasciculus SubClassOf tract of diencephalon

Changes for: claustral amygdaloid area

Deleted
- - claustral amygdaloid area SubClassOf cerebral hemisphere grey matter
Added
- + claustral amygdaloid area SubClassOf cortex of temporal lobe

Changes for: lateral inferior limiting sulcus

Deleted
- - lateral inferior limiting sulcus SubClassOf cerebral cortex lobe

Changes for: superior temporal sulcus

Deleted
- - superior temporal sulcus SubClassOf cerebral cortex lobe

Changes for: lateral nuclear group of thalamus

Deleted
- - lateral nuclear group of thalamus SubClassOf brain grey matter

Changes for: lamina of septum pellucidum

Deleted
- - lamina of septum pellucidum SubClassOf cerebral hemisphere white matter
- - lamina of septum pellucidum comment editor note
Added
- + lamina of septum pellucidum SubClassOf lamina of cerebral hemisphere

Changes for: eponychium

Deleted
- - eponychium SubClassOf organ component layer
Added
- + eponychium SubClassOf integumentary system layer

Changes for: diagonal band of Broca

Deleted
- - diagonal band of Broca SubClassOf white matter
Added
- + diagonal band of Broca SubClassOf central nervous system cell part cluster
- + diagonal band of Broca SubClassOf neuron projection bundle
- + diagonal band of Broca SubClassOf part of some cerebral hemisphere white matter
- + diagonal band of Broca SubClassOf structure with developmental contribution from neural crest

Changes for: hilum

Deleted
- - hilum SubClassOf orifice
Added
- + hilum SubClassOf pit

Changes for: lung hilus

Deleted
- - lung hilus SubClassOf endoderm-derived structure

Changes for: medial lemniscus of medulla

Deleted
- - medial lemniscus of medulla SubClassOf regional part of medulla oblongata
- - medial lemniscus of medulla SubClassOf white matter of medulla oblongata
Added
- + medial lemniscus of medulla SubClassOf structure with developmental contribution from neural crest

Changes for: intermediate periventricular nucleus

Deleted
- - intermediate periventricular nucleus SubClassOf regional part of intermediate hypothalamic region

Changes for: ventral amygdalofugal projection

Deleted
- - ventral amygdalofugal projection SubClassOf part of some telencephalon
- - ventral amygdalofugal projection SubClassOf white matter of telencephalon
Added
- + ventral amygdalofugal projection SubClassOf part of some cerebral hemisphere white matter
- + ventral amygdalofugal projection SubClassOf structure with developmental contribution from neural crest
- + ventral amygdalofugal projection SubClassOf tract of brain

Changes for: hilum of dentate nucleus

Deleted
- - hilum of dentate nucleus SubClassOf brain white matter
Added
- + hilum of dentate nucleus SubClassOf hilum of neuraxis

Changes for: nephron tubule epithelium

Added
- + nephron tubule epithelium SubClassOf contributes to morphology of some kidney epithelium
- + nephron tubule epithelium SubClassOf contributes to morphology of some nephron tubule

Changes for: set of lower jaw teeth

Added
- + set of lower jaw teeth SubClassOf endoderm-derived structure

Changes for: kidney epithelium

Added
- + kidney epithelium SubClassOf contributes to morphology of some kidney

Changes for: larynx epithelium

Added
- + larynx epithelium SubClassOf contributes to morphology of some larynx

Changes for: seminiferous tubule epithelium

Added
- + seminiferous tubule epithelium SubClassOf contributes to morphology of some seminiferous tubule of testis

Changes for: midbrain nucleus

Deleted
- - midbrain nucleus SubClassOf regional part of midbrain

Changes for: pulmonary alveolus epithelium

Added
- + pulmonary alveolus epithelium SubClassOf contributes to morphology of some alveolus of lung
- + pulmonary alveolus epithelium SubClassOf contributes to morphology of some lung epithelium

Changes for: telencephalic nucleus

Deleted
- - telencephalic nucleus SubClassOf regional part of telencephalon
Added
- + telencephalic nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: posterior periventricular nucleus

Deleted
- - posterior periventricular nucleus SubClassOf regional part of posterior hypothalamic region

Changes for: posterior nucleus of hypothalamus

Deleted
- - posterior nucleus of hypothalamus SubClassOf regional part of posterior hypothalamic region

Changes for: respiratory tract epithelium

Added
- + respiratory tract epithelium SubClassOf contributes to morphology of some respiratory system

Changes for: cervix epithelium

Added
- + cervix epithelium SubClassOf contributes to morphology of some uterine cervix

Changes for: central part of body of bony vertebral centrum

Deleted
- - central part of body of vertebra label central part of body of vertebra
Added
- + central part of body of bony vertebral centrum has exact synonym central part of body of vertebra { database cross reference=FMA:24003 }
- + central part of body of bony vertebral centrum label central part of body of bony vertebral centrum

Changes for: central tegmental tract of midbrain

Deleted
- - central tegmental tract of midbrain SubClassOf brainstem white matter
Added
- + central tegmental tract of midbrain SubClassOf tract of brain

Changes for: decussation of superior cerebellar peduncle

Deleted
- - decussation of superior cerebellar peduncle SubClassOf brainstem white matter

Changes for: brachium of superior colliculus

Deleted
- - brachium of superior colliculus SubClassOf part of some superior colliculus
- - brachium of superior colliculus SubClassOf white matter of superior colliculus
Added
- + brachium of superior colliculus SubClassOf central nervous system cell part cluster
- + brachium of superior colliculus SubClassOf neuron projection bundle
- + brachium of superior colliculus SubClassOf part of some white matter of superior colliculus

Changes for: postcentral gyrus

Added
- + postcentral gyrus SubClassOf contributes to morphology of some parietal lobe

Changes for: external nucleus of inferior colliculus

Deleted
- - external nucleus of inferior colliculus SubClassOf brain grey matter
- - external nucleus of inferior colliculus SubClassOf regional part of inferior colliculus

Changes for: principal pretectal nucleus

Deleted
- - principal pretectal nucleus SubClassOf brain grey matter

Changes for: pericentral nucleus of inferior colliculus

Deleted
- - pericentral nucleus of inferior colliculus SubClassOf brain grey matter
- - pericentral nucleus of inferior colliculus SubClassOf regional part of inferior colliculus

Changes for: transverse temporal sulcus

Deleted
- - transverse temporal sulcus SubClassOf cerebral cortex lobe
- - transverse temporal sulcus SubClassOf sulcus of brain
Added
- + transverse temporal sulcus SubClassOf part of some temporal lobe
- + transverse temporal sulcus SubClassOf subarachnoid sulcus
- + transverse temporal sulcus SubClassOf temporal sulcus

Changes for: olivary pretectal nucleus

Deleted
- - olivary pretectal nucleus SubClassOf brain grey matter
Added
- + olivary pretectal nucleus SubClassOf contributes to morphology of some pretectal region

Changes for: superior precentral sulcus

Deleted
- - superior precentral sulcus SubClassOf cerebral cortex lobe
Added
- + superior precentral sulcus SubClassOf part of some precentral fissure of cerebellum

Changes for: temporal operculum

Deleted
- - temporal operculum SubClassOf cerebral cortex lobe
Added
- + temporal operculum SubClassOf ectoderm-derived structure
- + temporal operculum SubClassOf structure with developmental contribution from neural crest

Changes for: superior frontal sulcus

Deleted
- - superior frontal sulcus SubClassOf cerebral cortex lobe

Changes for: central nucleus of inferior colliculus

Deleted
- - central nucleus of inferior colliculus SubClassOf brain grey matter
- - central nucleus of inferior colliculus SubClassOf regional part of inferior colliculus

Changes for: corticotectal tract

Deleted
- - corticotectal tract SubClassOf brain white matter
Added
- + corticotectal tract SubClassOf tract of brain

Changes for: vestibulocerebellar tract

Deleted
- - vestibulocerebellar tract SubClassOf part of some white matter

Changes for: digit

Added
- + digit SubClassOf contributes to morphology of some autopod region

Changes for: pharyngeal arch

Deleted
- - pharyngeal arch definition One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches { database cross reference=http://en.wikipedia.org/wiki/Pharyngeal_arch , database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/16313389 , database cross reference=NLM:branchial+arch }
Added
- + pharyngeal arch SubClassOf endoderm-derived structure
- + pharyngeal arch SubClassOf multi-tissue structure
- + pharyngeal arch definition One of a series of paired bulges that develop along the lateral walls of the foregut. The pharyngeal arches have developmental contributions from endoderm, mesoderm, and neural crest cells and are separated by anterior lateral endoderm out-pockets known as pharyngeal pouches. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/16313389 , database cross reference=UBERON:cjm , database cross reference=ZFA:yb }

Changes for: male membranous urethra

Added
- + male membranous urethra SubClassOf contributes to morphology of some male urethra

Changes for: ureteral orifice

Added
- + ureteral orifice SubClassOf contributes to morphology of some ureterovesical junction

Changes for: antitragus

Added
- + antitragus SubClassOf develops from some auditory hillocks, pharyngeal arch 2 derived
- + antitragus SubClassOf endoderm-derived structure
- + antitragus SubClassOf structure with developmental contribution from neural crest

Changes for: antihelix

Added
- + antihelix SubClassOf develops from some auditory hillocks, pharyngeal arch 2 derived
- + antihelix SubClassOf endoderm-derived structure
- + antihelix SubClassOf structure with developmental contribution from neural crest

Changes for: otolithic part of statoconial membrane

Deleted
- - otolithic membrane SubClassOf bounding layer of some otolith organ
- - otolithic membrane SubClassOf part of some vestibular labyrinth
- - otolithic membrane definition a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain’s interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane. The membrane is composed of crystalline particles of calcium carbonate called otoliths. When the head is moved the otoliths shift, causing cilia in the nearby saccule and utricle to distort. This produces nerve signals which are sent to the brain, which then uses them to establish its sense of balance. The embedded crystals are very and dense and make the density of the otolithic membrane higher than that of the endolymph surrounding it. When the head accelerates along a line or tilts to change its orientation to gravity, the otolithic membrane shifts relative to the bone supporting the maculae. This shift bends the hair cells whose processes are embedded in the otolithic membrane.[WP]. { database cross reference=http://en.wikipedia.org/wiki/Otolithic_membrane }
- - otolithic membrane has exact synonym membrana statoconiorum { database cross reference=FMA:75573 , database cross reference=FMA:TA , has synonym type=latin term }
- - otolithic membrane label otolithic membrane
Added
- + otolithic part of statoconial membrane EquivalentTo acellular membrane and part of some statoconial membrane and composed primarily of some otolith
- + otolithic part of statoconial membrane SubClassOf composed primarily of some otolith
- + otolithic part of statoconial membrane SubClassOf part of some statoconial membrane
- + otolithic part of statoconial membrane definition The layer of the statoconial membrane that is composed of otoliths { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/2482728 }
- + otolithic part of statoconial membrane has broad synonym membrana statoconiorum { database cross reference=FMA:75573 , database cross reference=FMA:TA , has synonym type=latin term }
- + otolithic part of statoconial membrane has broad synonym otolithic membrane { database cross reference=MA:0002842 }
- + otolithic part of statoconial membrane label otolithic part of statoconial membrane

Changes for: basicranium

Added
- + basicranium SubClassOf contributes to morphology of some cranium

Changes for: face

Added
- + face SubClassOf contributes to morphology of some head

Changes for: preorbital process of the pars facialis of the maxilla

Deleted
- - preorbital process of the pars facialis of the maxilla SubClassOf mesoderm-derived structure
Added
- + preorbital process of the pars facialis of the maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: skin of external ear

Added
- + skin of external ear SubClassOf structure with developmental contribution from neural crest

Changes for: posterior ramus of pterygoid

Deleted
- - posterior ramus of pterygoid SubClassOf mesoderm-derived structure
Added
- + posterior ramus of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: posterior mental process

Added
- + posterior mental process SubClassOf endoderm-derived structure

Changes for: prearticular coronoid process

Deleted
- - prearticular coronoid process SubClassOf mesoderm-derived structure
Added
- + prearticular coronoid process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: skeletal system

Added
- + skeletal system EquivalentTo anatomical system and has part some skeleton and has part some articular system
- + skeletal system SubClassOf has part some articular system
- + skeletal system SubClassOf has part some skeleton

Changes for: posterior condyle

Added
- + posterior condyle SubClassOf endoderm-derived structure

Changes for: pretectal nucleus

Deleted
- - pretectal nucleus SubClassOf regional part of pretectal region

Changes for: epiphysis

Added
- + epiphysis SubClassOf contributes to morphology of some long bone

Changes for: metaphysis

Added
- + metaphysis SubClassOf contributes to morphology of some long bone

Changes for: ascending aorta

Added
- + ascending aorta SubClassOf contributes to morphology of some thoracic aorta

Changes for: recurrent laryngeal nerve

Added
- + recurrent laryngeal nerve SubClassOf endoderm-derived structure

Changes for: splanchnic nerve

Added
- + splanchnic nerve SubClassOf contributes to morphology of some sympathetic nervous system

Changes for: placental labyrinth villous

Added
- + placental labyrinth villous SubClassOf contributes to morphology of some placenta labyrinth

Changes for: placenta intervillous maternal lacunae

Added
- + placenta intervillous maternal lacunae SubClassOf contributes to morphology of some placenta labyrinth

Changes for: placenta fetal blood space

Added
- + placenta fetal blood space SubClassOf contributes to morphology of some placenta labyrinth

Changes for: sinus of Valsalva

Added
- + sinus of Valsalva SubClassOf contributes to morphology of some bulb of aorta

Changes for: pulmonary neuroendocrine body

Added
- + pulmonary neuroendocrine body SubClassOf contributes to morphology of some lung epithelium

Changes for: intrahepatic bile duct

Added
- + intrahepatic bile duct SubClassOf contributes to morphology of some liver

Changes for: pars palatina of maxilla

Deleted
- - pars palatina of maxilla SubClassOf mesoderm-derived structure
Added
- + pars palatina of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pars palatina of premaxilla

Deleted
- - pars palatina of premaxilla SubClassOf mesoderm-derived structure
Added
- + pars palatina of premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: skin of prepuce of penis

Added
- + skin of prepuce of penis SubClassOf contributes to morphology of some penis

Changes for: lymphatic vessel

Added
- + lymphatic vessel SubClassOf contributes to morphology of some immune system

Changes for: pars interna plectri

Added
- + pars interna plectri SubClassOf endoderm-derived structure

Changes for: pars media plectri

Added
- + pars media plectri SubClassOf endoderm-derived structure

Changes for: pars facialis of maxilla

Deleted
- - pars facialis of maxilla SubClassOf mesoderm-derived structure
Added
- + pars facialis of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: paracentral sulcus

Deleted
- - paracentral sulcus SubClassOf cerebral cortex lobe

Changes for: principal sensory nucleus of trigeminal nerve

Deleted
- - principal sensory nucleus of trigeminal nerve SubClassOf regional part of metencephalon
Added
- + principal sensory nucleus of trigeminal nerve SubClassOf structure with developmental contribution from neural crest

Changes for: dentatothalamic tract

Deleted
- - dentatothalamic tract SubClassOf brainstem white matter
Added
- + dentatothalamic tract SubClassOf tract of brain

Changes for: orbital operculum

Deleted
- - orbital operculum SubClassOf cerebral cortex lobe
Added
- + orbital operculum SubClassOf ectoderm-derived structure
- + orbital operculum SubClassOf structure with developmental contribution from neural crest

Changes for: orbital sulcus

Deleted
- - orbital sulcus SubClassOf cerebral cortex lobe
Added
- + orbital sulcus SubClassOf part of some frontal lobe

Changes for: intermediate reticular nucleus

Deleted
- - intermediate reticular nucleus SubClassOf regional part of medullary reticular formation

Changes for: male urethral crest

Added
- + male urethral crest SubClassOf contributes to morphology of some male urethra

Changes for: female urethral crest

Added
- + female urethral crest SubClassOf contributes to morphology of some female urethra

Changes for: Guérin’s valve

Added
- + Guérin’s valve SubClassOf contributes to morphology of some navicular fossa of spongiose part of urethra

Changes for: urethral crest

Added
- + urethral crest SubClassOf contributes to morphology of some urethra

Changes for: navicular fossa of spongiose part of urethra

Added
- + navicular fossa of spongiose part of urethra SubClassOf contributes to morphology of some spongiose part of urethra

Changes for: aorta tunica media

Added
- + aorta tunica media SubClassOf contributes to morphology of some aorta wall

Changes for: aorta tunica intima

Added
- + aorta tunica intima SubClassOf contributes to morphology of some aorta wall

Changes for: visceral yolk sac cavity

Added
- + visceral yolk sac cavity SubClassOf contributes to morphology of some extraembryonic structure

Changes for: processus lingualis of pterygoid

Deleted
- - processus lingualis of pterygoid SubClassOf mesoderm-derived structure
Added
- + processus lingualis of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: processus internus of pseudoangular

Added
- + processus internus of pseudoangular SubClassOf endoderm-derived structure

Changes for: thymus trabecula

Added
- + thymus trabecula SubClassOf contributes to morphology of some thymus

Changes for: limb muscle

Added
- + limb muscle SubClassOf contributes to morphology of some musculature

Changes for: entire pharyngeal arch endoderm

Deleted
- - entire pharyngeal arch endoderm SubClassOf anatomical cluster
Added
- + entire pharyngeal arch endoderm SubClassOf develops from some endoderm
- + entire pharyngeal arch endoderm SubClassOf embryonic tissue
- + entire pharyngeal arch endoderm SubClassOf foregut epithelium
- + entire pharyngeal arch endoderm SubClassOf part of some pharyngeal arch system
- + entire pharyngeal arch endoderm SubClassOf upper respiratory tract epithelium

Changes for: arch of aorta

Added
- + arch of aorta SubClassOf contributes to morphology of some thoracic aorta

Changes for: articular system

Deleted
- - articular system SubClassOf has part some skeletal joint
Added
- + articular system EquivalentTo anatomical cluster and has member some skeletal joint
- + articular system SubClassOf anatomical cluster
- + articular system SubClassOf has member some skeletal joint

Changes for: inner renal medulla vasa recta

Added
- + inner renal medulla vasa recta SubClassOf contributes to morphology of some inner medulla of kidney

Changes for: outer renal medulla vasa recta

Added
- + outer renal medulla vasa recta SubClassOf contributes to morphology of some outer medulla of kidney

Changes for: thoracic aorta

Added
- + thoracic aorta SubClassOf contributes to morphology of some aorta

Changes for: abdominal aorta

Added
- + abdominal aorta SubClassOf contributes to morphology of some descending aorta

Changes for: processus ascendens plectri

Added
- + processus ascendens plectri SubClassOf endoderm-derived structure

Changes for: kidney pelvis urothelium

Added
- + kidney pelvis urothelium SubClassOf contributes to morphology of some renal pelvis

Changes for: urethra urothelium

Added
- + urethra urothelium SubClassOf contributes to morphology of some urethra

Changes for: transverse orbital sulcus

Deleted
- - transverse orbital sulcus SubClassOf cerebral cortex lobe
- - transverse orbital sulcus SubClassOf sulcus of brain
Added
- + transverse orbital sulcus SubClassOf orbital sulcus

Changes for: ventral tegmental decussation

Deleted
- - ventral tegmental decussation SubClassOf brainstem white matter

Changes for: bone of lower jaw

Added
- + bone of lower jaw SubClassOf endoderm-derived structure

Changes for: orbital part of inferior frontal gyrus

Deleted
- - orbital part of inferior frontal gyrus SubClassOf cerebral cortex lobe
- - orbital part of inferior frontal gyrus SubClassOf organ part
Added
- + orbital part of inferior frontal gyrus SubClassOf frontal gyrus
- + orbital part of inferior frontal gyrus SubClassOf part of some inferior frontal gyrus

Changes for: cerebral peduncle

Deleted
- - cerebral peduncle SubClassOf brain white matter
Added
- + cerebral peduncle SubClassOf white matter of midbrain
- + cerebral peduncle comment Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM)

Changes for: palatal muscle

Added
- + palatal muscle SubClassOf endoderm-derived structure

Changes for: cranial suture

Added
- + cranial suture SubClassOf contributes to morphology of some cranium

Changes for: masticatory muscle

Added
- + masticatory muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: dentary

Added
- + dentary SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pubic symphysis

Added
- + pubic symphysis SubClassOf contributes to morphology of some pubis

Changes for: articular/anguloarticular

Added
- + articular/anguloarticular SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: limbic lobe

Deleted
- - limbic lobe SubClassOf cerebral cortex lobe
Added
- + limbic lobe SubClassOf lobe of cerebral hemisphere

Changes for: ventral nucleus of lateral lemniscus

Deleted
- - ventral nucleus of lateral lemniscus SubClassOf regional part of metencephalon
Added
- + ventral nucleus of lateral lemniscus SubClassOf structure with developmental contribution from neural crest

Changes for: supraoccipital bone

Deleted
- - supraoccipital bone comment Taxon notes (via VHOG): See Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.237 Table 7.1
Added
- + supraoccipital bone comment Taxon notes (via VHOG): See Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution, Fourth Edition (2006) McGraw-Hill, p.237 Table 7.1; usually forming a part of the occipital in the adult, but distinct in the young [PMID:10742104]
- + supraoccipital bone definition Endochondral bone that is located at the dorsal part of the occipital region of the cranium or the dorso-posterior part of the skull[TAP,modified]. { database cross reference=TAO:0000595 }

Changes for: superior rostral sulcus

Deleted
- - superior rostral sulcus SubClassOf cerebral cortex lobe

Changes for: precentral operculum

Deleted
- - precentral operculum SubClassOf cerebral cortex lobe
Added
- + precentral operculum SubClassOf ectoderm-derived structure
- + precentral operculum SubClassOf structure with developmental contribution from neural crest

Changes for: septum pellucidum

Added
- + septum pellucidum SubClassOf contributes to morphology of some septum of telencephalon

Changes for: crista ampullaris

Added
- + crista ampullaris SubClassOf contributes to morphology of some semicircular canal ampulla

Changes for: cerebellar vermis

Added
- + cerebellar vermis SubClassOf contributes to morphology of some cerebellar cortex

Changes for: piriform cortex

Added
- + piriform cortex SubClassOf contributes to morphology of some olfactory cortex

Changes for: urethral meatus

Added
- + urethral meatus SubClassOf contributes to morphology of some urethra

Changes for: ureteric bud trunk

Added
- + ureteric bud trunk SubClassOf contributes to morphology of some ureteric bud

Changes for: urinary bladder vasculature

Added
- + urinary bladder vasculature SubClassOf contributes to morphology of some urinary bladder

Changes for: intercalated amygdaloid nuclei

Deleted
- - intercalated amygdaloid nuclei SubClassOf regional part of cerebral cortex

Changes for: central amygdaloid nucleus

Deleted
- - central amygdaloid nucleus SubClassOf regional part of cerebral cortex

Changes for: lateral amygdaloid nucleus

Deleted
- - lateral amygdaloid nucleus SubClassOf regional part of cerebral cortex

Changes for: accessory basal amygdaloid nucleus

Deleted
- - accessory basal amygdaloid nucleus SubClassOf regional part of cerebral cortex

Changes for: basal amygdaloid nucleus

Deleted
- - basal amygdaloid nucleus SubClassOf regional part of cerebral cortex

Changes for: lateral part of basal amygdaloid nucleus

Deleted
- - lateral part of basal amygdaloid nucleus SubClassOf cerebral hemisphere grey matter
Added
- + lateral part of basal amygdaloid nucleus SubClassOf cortex of temporal lobe

Changes for: medial part of basal amygdaloid nucleus

Deleted
- - medial part of basal amygdaloid nucleus SubClassOf cerebral hemisphere grey matter
Added
- + medial part of basal amygdaloid nucleus SubClassOf cortex of temporal lobe

Changes for: medial amygdaloid nucleus

Deleted
- - medial amygdaloid nucleus SubClassOf regional part of cerebral cortex

Changes for: cortical amygdaloid nucleus

Deleted
- - cortical amygdaloid nucleus SubClassOf regional part of cerebral cortex

Changes for: anterior amygdaloid area

Deleted
- - anterior amygdaloid area SubClassOf cerebral hemisphere grey matter
Added
- + anterior amygdaloid area SubClassOf cortex of temporal lobe

Changes for: olfactory cortex

Added
- + olfactory cortex SubClassOf contributes to morphology of some olfactory lobe

Changes for: auditory cortex

Added
- + auditory cortex SubClassOf contributes to morphology of some temporal lobe

Changes for: gastrocnemius

Added
- + gastrocnemius SubClassOf contributes to morphology of some limb muscle

Changes for: soleus muscle

Added
- + soleus muscle SubClassOf contributes to morphology of some limb muscle

Changes for: primary motor cortex

Added
- + primary motor cortex SubClassOf contributes to morphology of some cerebral cortex
- + primary motor cortex SubClassOf contributes to morphology of some frontal cortex

Changes for: dorsal longitudinal vein

Deleted
- - dorsal longitudinal vein SubClassOf brain blood vessel
- - dorsal longitudinal vein SubClassOf part of some brain vasculature

Changes for: processus pterygoideus of maxilla

Deleted
- - processus pterygoideus of maxilla SubClassOf mesoderm-derived structure
Added
- + processus pterygoideus of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: processus posterior of maxilla

Deleted
- - processus posterior of maxilla SubClassOf mesoderm-derived structure
Added
- + processus posterior of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: central artery

Deleted
- - central artery SubClassOf brain blood vessel
- - central artery SubClassOf part of some brain vasculature

Changes for: pterygoid process of palatoquadrate

Added
- + pterygoid process of palatoquadrate SubClassOf endoderm-derived structure

Changes for: pterygoquadrate

Added
- + pterygoquadrate SubClassOf endoderm-derived structure

Changes for: quadrate process of palatoquadrate

Added
- + quadrate process of palatoquadrate SubClassOf endoderm-derived structure

Changes for: external acoustic meatus

Added
- + external acoustic meatus SubClassOf endoderm-derived structure

Changes for: processus zygomatico-maxillaris

Deleted
- - processus zygomatico-maxillaris SubClassOf mesoderm-derived structure
Added
- + processus zygomatico-maxillaris SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pseudodentary

Added
- + pseudodentary SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pseudobasal process

Added
- + pseudobasal process SubClassOf endoderm-derived structure

Changes for: vaginal hymen

Deleted
- - vaginal hymen definition The hymen, or the vaginal corona, is a fold of mucous membrane that surrounds or partially covers the external vaginal opening. It forms part of the vulva, or external genitalia[WP]. { database cross reference=http://en.wikipedia.org/wiki/Hymen }
Added
- + vaginal hymen definition A membrane that surrounds or partially covers the vaginal opening. { database cross reference=http://en.wikipedia.org/wiki/Hymen }

Changes for: epithelium of vagina

Added
- + epithelium of vagina SubClassOf contributes to morphology of some vagina

Changes for: retroarticular process

Added
- + retroarticular process SubClassOf endoderm-derived structure

Changes for: epididymis

Added
- + epididymis SubClassOf contributes to morphology of some internal male genitalia

Changes for: spongiose part of urethra

Added
- + spongiose part of urethra SubClassOf contributes to morphology of some male urethra

Changes for: urethral gland

Added
- + urethral gland SubClassOf contributes to morphology of some urethra

Changes for: stylus of pars media plectri

Added
- + stylus of pars media plectri SubClassOf endoderm-derived structure

Changes for: prostatic urethra

Added
- + prostatic urethra SubClassOf contributes to morphology of some male urethra

Changes for: incus endochondral element

Added
- + incus endochondral element SubClassOf endoderm-derived structure

Changes for: stapes endochondral element

Added
- + stapes endochondral element SubClassOf endoderm-derived structure

Changes for: malleus endochondral element

Added
- + malleus endochondral element SubClassOf endoderm-derived structure

Changes for: fronto-orbital gyrus

Added
- + fronto-orbital gyrus SubClassOf frontal gyrus

Changes for: anterior cingulate cortex

Deleted
- - anterior cingulate cortex SubClassOf regional part of cerebral cortex
Added
- + anterior cingulate cortex SubClassOf regional part of telencephalon

Changes for: brain grey matter

Deleted
- - brain grey matter definition A gray matter of neuraxis that is part of a brain [Automatically generated definition]. { database cross reference=OBOL:automatic }
- - brain grey matter has exact synonym brain gray matter of neuraxis { database cross reference=OBOL:automatic }
- - brain grey matter has exact synonym gray matter of neuraxis of brain { database cross reference=OBOL:automatic }
Added
- + brain grey matter definition A gray matter that is part of a brain [Automatically generated definition]. { database cross reference=OBOL:automatic }

Changes for: alisphenoid endochondral element

Added
- + alisphenoid endochondral element SubClassOf endoderm-derived structure

Changes for: brain white matter

Added
- + brain white matter SubClassOf contributes to morphology of some brain

Changes for: Hatschek’s diverticulum

Deleted
- - Hatschek’s diverticulum SubClassOf part of some pharyngeal system
Added
- + Hatschek’s diverticulum SubClassOf part of some chordate pharynx

Changes for: Hatschek’s pit

Added
- + Hatschek’s pit SubClassOf endoderm-derived structure

Changes for: retina blood vessel

Added
- + retina blood vessel SubClassOf contributes to morphology of some retina

Changes for: medullary ray

Added
- + medullary ray SubClassOf contributes to morphology of some cortex of kidney

Changes for: lung blood vessel

Added
- + lung blood vessel SubClassOf contributes to morphology of some lung

Changes for: superior postcentral sulcus

Deleted
- - superior postcentral sulcus SubClassOf cerebral cortex lobe

Changes for: posterior subcentral sulcus

Deleted
- - posterior subcentral sulcus SubClassOf cerebral cortex lobe

Changes for: subparietal sulcus

Deleted
- - subparietal sulcus SubClassOf cerebral cortex lobe

Changes for: posterior ascending limb of lateral sulcus

Deleted
- - posterior ascending limb of lateral sulcus SubClassOf cerebral cortex lobe

Changes for: parietal operculum

Deleted
- - parietal operculum SubClassOf cerebral cortex lobe
Added
- + parietal operculum SubClassOf ectoderm-derived structure
- + parietal operculum SubClassOf structure with developmental contribution from neural crest

Changes for: marginal sulcus

Deleted
- - marginal sulcus SubClassOf cerebral cortex lobe

Changes for: intraparietal sulcus

Deleted
- - intraparietal sulcus SubClassOf cerebral cortex lobe

Changes for: inferior postcentral sulcus

Deleted
- - inferior postcentral sulcus SubClassOf cerebral cortex lobe

Changes for: postcentral sulcus

Deleted
- - postcentral sulcus SubClassOf cerebral cortex lobe

Changes for: trapezoid body

Deleted
- - trapezoid body SubClassOf white matter
Added
- + trapezoid body SubClassOf brainstem white matter
- + trapezoid body SubClassOf part of some pontine tegmentum
- + trapezoid body SubClassOf structure with developmental contribution from neural crest

Changes for: tectopontine tract

Deleted
- - tectopontine tract SubClassOf part of some white matter

Changes for: frontal operculum

Deleted
- - frontal operculum SubClassOf cerebral cortex lobe
Added
- + frontal operculum SubClassOf ectoderm-derived structure
- + frontal operculum SubClassOf structure with developmental contribution from neural crest

Changes for: ventral posteromedial nucleus of thalamus

Deleted
- - ventral posteromedial nucleus of thalamus SubClassOf brain grey matter

Changes for: lingual gyrus

Deleted
- - lingual gyrus SubClassOf cerebral cortex lobe
- - lingual gyrus SubClassOf organ part
- - lingual gyrus definition The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Lingual_gyrus }
Added
- + lingual gyrus SubClassOf occipital gyrus
- + lingual gyrus definition The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Lingual_gyrus }

Changes for: capsule of red nucleus

Deleted
- - capsule of red nucleus has broad synonym cr { database cross reference=NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_732 , has synonym type=abbreviation }
Added
- + capsule of red nucleus SubClassOf white matter of midbrain
- + capsule of red nucleus has broad synonym CR { database cross reference=NIF_GrossAnatomy:NeuroNames_abbrevSource,NIF_GrossAnatomy:birnlex_732 , has synonym type=abbreviation }

Changes for: lateral lemniscus

Deleted
- - lateral lemniscus SubClassOf brain white matter

Changes for: granular layer of cerebellar cortex

Added
- + granular layer of cerebellar cortex EquivalentTo cerebellar layer and in deep part of some cerebellar cortex
- + granular layer of cerebellar cortex SubClassOf in deep part of some cerebellar cortex

Changes for: medial lemniscus of pons

Deleted
- - medial lemniscus of pons SubClassOf brainstem white matter
- - medial lemniscus of pons SubClassOf regional part of metencephalon
Added
- + medial lemniscus of pons SubClassOf structure with developmental contribution from neural crest

Changes for: telencephalon dura mater

Added
- + telencephalon dura mater database cross reference EMAPA:17776

Changes for: intermediate acoustic stria

Added
- + intermediate acoustic stria SubClassOf stria of neuraxis

Changes for: cingulate gyrus

Deleted
- - cingulate gyrus SubClassOf cerebral cortex lobe
Added
- + cingulate gyrus SubClassOf contributes to morphology of some cerebral cortex

Changes for: inferior temporal sulcus

Deleted
- - inferior temporal sulcus SubClassOf cerebral cortex lobe

Changes for: basitrabecular process

Added
- + basitrabecular process SubClassOf endoderm-derived structure

Changes for: quadratoethmoid process

Added
- + quadratoethmoid process SubClassOf endoderm-derived structure

Changes for: Purkinje cell layer of cerebellar cortex

Deleted
- - Purkinje cell layer of cerebellar cortex SubClassOf part of some cerebellar cortex
Added
- + Purkinje cell layer of cerebellar cortex SubClassOf immediately superficial to some granular layer of cerebellar cortex

Changes for: mammary gland connective tissue

Added
- + mammary gland connective tissue SubClassOf contributes to morphology of some mammary gland

Changes for: parahippocampal gyrus

Deleted
- - parahippocampal gyrus SubClassOf cerebral cortex lobe
- - parahippocampal gyrus SubClassOf part of some limbic system

Changes for: molecular layer of cerebellar cortex

Deleted
- - molecular layer of cerebellar cortex SubClassOf part of some cerebellar cortex
Added
- + molecular layer of cerebellar cortex EquivalentTo cerebellar layer and in superficial part of some cerebellar cortex
- + molecular layer of cerebellar cortex SubClassOf in superficial part of some cerebellar cortex

Changes for: central tegmental tract of pons

Deleted
- - central tegmental tract of pons SubClassOf part of some white matter

Changes for: olfactory sulcus

Deleted
- - olfactory sulcus SubClassOf cerebral cortex lobe

Changes for: olivocochlear bundle

Deleted
- - olivocochlear bundle SubClassOf brain white matter
- - olivocochlear bundle SubClassOf part of some hindbrain
Added
- + olivocochlear bundle SubClassOf part of some pontine tegmentum
- + olivocochlear bundle SubClassOf structure with developmental contribution from neural crest
- + olivocochlear bundle SubClassOf tract of brain

Changes for: 1st arch maxillary endoderm

Deleted
- - 1st arch maxillary endoderm SubClassOf endo-epithelium
- - 1st arch maxillary endoderm SubClassOf gut epithelium
- - 1st arch maxillary endoderm SubClassOf unilaminar epithelium
Added
- + 1st arch maxillary endoderm SubClassOf endoderm of foregut
- + 1st arch maxillary endoderm SubClassOf upper respiratory tract epithelium

Changes for: 1st arch mandibular ectoderm

Deleted
- - 1st arch mandibular ectoderm SubClassOf unilaminar epithelium
Added
- + 1st arch mandibular ectoderm SubClassOf endoderm of foregut
- + 1st arch mandibular ectoderm SubClassOf upper respiratory tract epithelium

Changes for: 1st arch mandibular endoderm

Deleted
- - 1st arch mandibular endoderm SubClassOf endo-epithelium
- - 1st arch mandibular endoderm SubClassOf gut epithelium
- - 1st arch mandibular endoderm SubClassOf unilaminar epithelium
Added
- + 1st arch mandibular endoderm SubClassOf endoderm of foregut
- + 1st arch mandibular endoderm SubClassOf upper respiratory tract epithelium

Changes for: 1st arch maxillary-mandibular cleft

Added
- + 1st arch maxillary-mandibular cleft SubClassOf endoderm of foregut
- + 1st arch maxillary-mandibular cleft SubClassOf upper respiratory tract epithelium

Changes for: inferior precentral sulcus

Deleted
- - inferior precentral sulcus SubClassOf cerebral cortex lobe

Changes for: inferior frontal sulcus

Deleted
- - inferior frontal sulcus SubClassOf cerebral cortex lobe

Changes for: ventral corticospinal tract

Deleted
- - ventral corticospinal tract SubClassOf part of some white matter

Changes for: inferior rostral sulcus

Deleted
- - inferior rostral sulcus SubClassOf cerebral cortex lobe

Changes for: superior temporal gyrus

Added
- + superior temporal gyrus SubClassOf contributes to morphology of some temporal lobe

Changes for: predorsal bundle

Deleted
- - predorsal bundle SubClassOf part of some medulla oblongata
- - predorsal bundle SubClassOf part of some white matter
Added
- + predorsal bundle SubClassOf part of some white matter of medulla oblongata

Changes for: olivocerebellar tract

Deleted
- - olivocerebellar tract SubClassOf part of some medulla oblongata
- - olivocerebellar tract SubClassOf part of some white matter
Added
- + olivocerebellar tract SubClassOf part of some white matter of medulla oblongata

Changes for: pyramidal decussation

Deleted
- - pyramidal decussation SubClassOf part of some medulla oblongata
- - pyramidal decussation SubClassOf part of some white matter
- - pyramidal decussation SubClassOf white matter of medulla oblongata
Added
- + pyramidal decussation SubClassOf part of some white matter of medulla oblongata
- + pyramidal decussation SubClassOf structure with developmental contribution from neural crest

Changes for: myometrium

Added
- + myometrium SubClassOf contributes to morphology of some uterus

Changes for: endometrium

Added
- + endometrium SubClassOf contributes to morphology of some uterus

Changes for: glans penis

Added
- + glans penis SubClassOf contributes to morphology of some penis

Changes for: inner medulla of kidney

Added
- + inner medulla of kidney SubClassOf contributes to morphology of some renal medulla

Changes for: outer medulla of kidney

Added
- + outer medulla of kidney SubClassOf contributes to morphology of some renal medulla

Changes for: distal convoluted tubule

Added
- + distal convoluted tubule SubClassOf contributes to morphology of some nephron tubule

Changes for: thick ascending limb of loop of Henle

Added
- + thick ascending limb of loop of Henle SubClassOf contributes to morphology of some ascending limb of loop of Henle

Changes for: nephron

Added
- + nephron SubClassOf contributes to morphology of some kidney

Changes for: proximal convoluted tubule

Added
- + proximal convoluted tubule SubClassOf contributes to morphology of some nephron tubule

Changes for: Bowman’s space

Added
- + Bowman’s space SubClassOf contributes to morphology of some glomerular capsule

Changes for: descending limb of loop of Henle

Added
- + descending limb of loop of Henle SubClassOf contributes to morphology of some loop of Henle

Changes for: loop of Henle

Added
- + loop of Henle SubClassOf contributes to morphology of some nephron tubule

Changes for: hepatic sinusoid

Added
- + hepatic sinusoid SubClassOf contributes to morphology of some liver lobule

Changes for: liver parenchyma

Added
- + liver parenchyma SubClassOf contributes to morphology of some liver

Changes for: bile canaliculus

Added
- + bile canaliculus SubClassOf contributes to morphology of some liver lobule

Changes for: intralobular bile duct

Added
- + intralobular bile duct SubClassOf contributes to morphology of some liver lobule

Changes for: tympanosquamosal

Added
- + tympanosquamosal SubClassOf endoderm-derived structure

Changes for: portal triad

Added
- + portal triad SubClassOf contributes to morphology of some portal lobule

Changes for: intestinal epithelium

Added
- + intestinal epithelium SubClassOf contributes to morphology of some intestine

Changes for: epithelium of stomach

Added
- + epithelium of stomach SubClassOf contributes to morphology of some mucosa of stomach

Changes for: pubis

Added
- + pubis SubClassOf contributes to morphology of some pelvic girdle bone/zone

Changes for: ischium

Added
- + ischium SubClassOf contributes to morphology of some pelvic girdle bone/zone

Changes for: ilium

Added
- + ilium SubClassOf contributes to morphology of some pelvic girdle bone/zone

Changes for: obsolete CoPA

Deleted
- - obsolete CoPA definition An interneuron in the spinal cord. CoPA are bipolar with “T” shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. { database cross reference=ZFIN:ZDB-PUB-010807-17 , database cross reference=ZFIN:ZDB-PUB-961014-274 , database cross reference=ZFIN:ZDB-PUB-961014-649 }
Added
- + obsolete CoPA definition An interneuron in the spinal cord. CoPA are bipolar with ‘T’ shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord. { database cross reference=ZFIN:ZDB-PUB-010807-17 , database cross reference=ZFIN:ZDB-PUB-961014-274 , database cross reference=ZFIN:ZDB-PUB-961014-649 }

Changes for: frontal pole

Deleted
- - frontal pole EquivalentTo pole of cerebral hemisphere and part of some frontal cortex
- - frontal pole SubClassOf part of some frontal cortex
Added
- + frontal pole EquivalentTo pole of cerebral hemisphere and part of some frontal lobe
- + frontal pole SubClassOf part of some frontal lobe

Changes for: pancreatic acinus

Added
- + pancreatic acinus SubClassOf contributes to morphology of some exocrine pancreas

Changes for: dorsal acoustic stria

Deleted
- - dorsal acoustic stria SubClassOf white matter
Added
- + dorsal acoustic stria SubClassOf brainstem white matter
- + dorsal acoustic stria SubClassOf part of some pontine tegmentum
- + dorsal acoustic stria SubClassOf stria of neuraxis
- + dorsal acoustic stria SubClassOf structure with developmental contribution from neural crest

Changes for: fronto-orbital sulcus

Deleted
- - fronto-orbital sulcus SubClassOf cerebral cortex lobe

Changes for: mucosa of urinary bladder

Added
- + mucosa of urinary bladder SubClassOf contributes to morphology of some urinary bladder

Changes for: parahyoid

Added
- + parahyoid SubClassOf endoderm-derived structure

Changes for: hyoid plate

Added
- + hyoid plate SubClassOf endoderm-derived structure

Changes for: pars reuniens

Added
- + pars reuniens SubClassOf endoderm-derived structure

Changes for: red pulp of spleen

Added
- + red pulp of spleen SubClassOf contributes to morphology of some spleen

Changes for: urothelium of ureter

Added
- + urothelium of ureter SubClassOf contributes to morphology of some ureter

Changes for: trigone of urinary bladder

Added
- + trigone of urinary bladder SubClassOf contributes to morphology of some urinary bladder

Changes for: neck of urinary bladder

Added
- + neck of urinary bladder SubClassOf contributes to morphology of some urinary bladder

Changes for: spleen lymphoid follicle

Added
- + spleen lymphoid follicle SubClassOf contributes to morphology of some white pulp of spleen

Changes for: hilum of spleen

Deleted
- - hilum of spleen SubClassOf mesoderm-derived structure

Changes for: lamina anterior of maxilla

Deleted
- - lamina anterior of maxilla SubClassOf mesoderm-derived structure
Added
- + lamina anterior of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: processus frontalis of maxilla

Deleted
- - processus frontalis of maxilla SubClassOf mesoderm-derived structure
Added
- + processus frontalis of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: crypt of Lieberkuhn of small intestine

Added
- + crypt of Lieberkuhn of small intestine SubClassOf contributes to morphology of some small intestine

Changes for: interlobular bile duct

Added
- + interlobular bile duct SubClassOf contributes to morphology of some portal triad

Changes for: crista praeopercularis

Added
- + crista praeopercularis SubClassOf endoderm-derived structure

Changes for: adrenal cortex

Added
- + adrenal cortex SubClassOf contributes to morphology of some adrenal gland

Changes for: sulcus ampullaris

Added
- + sulcus ampullaris SubClassOf contributes to morphology of some internal ear

Changes for: adrenal medulla

Added
- + adrenal medulla SubClassOf contributes to morphology of some adrenal gland

Changes for: glomerular capsule

Added
- + glomerular capsule SubClassOf contributes to morphology of some renal corpuscle

Changes for: nephron tubule

Added
- + nephron tubule SubClassOf contributes to morphology of some nephron

Changes for: collecting duct of renal tubule

Added
- + collecting duct of renal tubule SubClassOf contributes to morphology of some kidney

Changes for: renal corpuscle

Added
- + renal corpuscle SubClassOf contributes to morphology of some cortex of kidney
- + renal corpuscle SubClassOf contributes to morphology of some nephron

Changes for: renal papilla

Added
- + renal papilla SubClassOf contributes to morphology of some renal pelvis

Changes for: renal pelvis

Added
- + renal pelvis SubClassOf contributes to morphology of some ureter

Changes for: cortex of kidney

Added
- + cortex of kidney SubClassOf contributes to morphology of some kidney

Changes for: adrenal gland X zone

Added
- + adrenal gland X zone SubClassOf contributes to morphology of some adrenal cortex

Changes for: muscularis mucosae of stomach

Added
- + muscularis mucosae of stomach SubClassOf contributes to morphology of some mucosa of stomach

Changes for: pyloric sphincter

Added
- + pyloric sphincter SubClassOf contributes to morphology of some pylorus

Changes for: serosa of stomach

Added
- + serosa of stomach SubClassOf contributes to morphology of some wall of stomach

Changes for: submucosa of stomach

Added
- + submucosa of stomach SubClassOf contributes to morphology of some wall of stomach

Changes for: infundibulum of gallbladder

Added
- + infundibulum of gallbladder SubClassOf contributes to morphology of some gallbladder

Changes for: processus confluens

Added
- + processus confluens SubClassOf endoderm-derived structure

Changes for: manubrium of hyale

Added
- + manubrium of hyale SubClassOf endoderm-derived structure

Changes for: ureter smooth muscle

Added
- + ureter smooth muscle SubClassOf contributes to morphology of some ureter

Changes for: kidney corticomedullary boundary

Added
- + kidney corticomedullary boundary SubClassOf contributes to morphology of some kidney

Changes for: posteromedial process

Added
- + posteromedial process SubClassOf endoderm-derived structure

Changes for: renal lobule

Added
- + renal lobule SubClassOf contributes to morphology of some kidney

Changes for: anterolateral process of hyoid plate

Added
- + anterolateral process of hyoid plate SubClassOf endoderm-derived structure

Changes for: posterolateral process

Added
- + posterolateral process SubClassOf endoderm-derived structure

Changes for: renal lobe

Added
- + renal lobe SubClassOf contributes to morphology of some kidney

Changes for: anterior process of hyoid apparatus

Added
- + anterior process of hyoid apparatus SubClassOf endoderm-derived structure

Changes for: ureterovesical junction

Added
- + ureterovesical junction SubClassOf contributes to morphology of some renal system

Changes for: ureteropelvic junction

Added
- + ureteropelvic junction SubClassOf contributes to morphology of some renal system

Changes for: primitive superior sagittal sinus

Deleted
- - primitive superior sagittal sinus SubClassOf vein
Added
- + primitive superior sagittal sinus SubClassOf venous sinus

Changes for: gland of tongue

Added
- + gland of tongue SubClassOf endoderm-derived structure

Changes for: mesenchyme of mandible

Added
- + mesenchyme of mandible SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: bony part of hard palate

Added
- + bony part of hard palate SubClassOf endoderm-derived structure

Changes for: mesenchyme of tongue

Added
- + mesenchyme of tongue SubClassOf endoderm-derived structure

Changes for: branchial basket

Deleted
- - branchial basket database cross reference http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg
Added
- + branchial basket depicted by http://dev.duit.uwa.edu.au/zoology/media/lamp/E19.jpg

Changes for: vestibulocochlear ganglion

Deleted
- - auditory ganglion label auditory ganglion
Added
- + vestibulocochlear ganglion has related synonym auditory ganglion { database cross reference=NIF_GrossAnatomy:birnlex_2564 }
- + vestibulocochlear ganglion label vestibulocochlear ganglion

Changes for: superior part of vestibular ganglion

Added
- + superior part of vestibular ganglion SubClassOf contributes to morphology of some vestibular ganglion
- + superior part of vestibular ganglion definition The part of the vestibular ganglion that receives fibers from the maculae of the utricle and the sacculae and the ampullae of the anterior and lateral semicircular ducts. { database cross reference=ISBN:0-683-40008-8 , database cross reference=MP:0000028 }

Changes for: vestibular ganglion

Deleted
- - vestibular ganglion definition The vestibular nerve ganglion (also called Scarpa’s ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Scarpa%27s_ganglion }
- - vestibular ganglion has exact synonym vestibulocochlear component
Added
- + vestibular ganglion EquivalentTo cranial ganglion and part of some vestibulocochlear ganglion and part of some vestibular system
- + vestibular ganglion SubClassOf part of some vestibular labyrinth
- + vestibular ganglion SubClassOf part of some vestibular system
- + vestibular ganglion definition The ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]. Distributed to the maculae of the utricle and saccule and to the ampullary crests of the semicircular ducts. The vestibular fibers arise in bipolar cells in the vestibular ganglion in the internal acoustic meatus. { database cross reference=http://en.wikipedia.org/wiki/Scarpa%27s_ganglion , database cross reference=http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html }
- + vestibular ganglion has exact synonym vestibular part of vestibulocochlear ganglion { database cross reference=UBERON:cjm }

Changes for: shoulder bone

Added
- + shoulder bone SubClassOf contributes to morphology of some appendicular skeleton

Changes for: diffuse reticular nucleus

Deleted
- - diffuse reticular nucleus SubClassOf regional part of metencephalon
Added
- + diffuse reticular nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: medial nucleus of trapezoid body

Deleted
- - medial nucleus of trapezoid body SubClassOf brain grey matter

Changes for: ventral nucleus of trapezoid body

Deleted
- - ventral nucleus of trapezoid body SubClassOf brain grey matter

Changes for: zygomatic plate

Deleted
- - zygomatic plate SubClassOf mesoderm-derived structure
Added
- + zygomatic plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: otolith

Deleted
- - otolith has exact synonym otoconia { has synonym type=plural term }
Added
- + otolith has related synonym otoconia { has synonym type=plural term }
- + otolith has related synonym statoconia { has synonym type=plural term }

Changes for: midbrain cerebral aqueduct

Deleted
- - midbrain cerebral aqueduct has exact synonym medial tectal ventricle { database cross reference=ZFA:0000159 }
- - midbrain cerebral aqueduct has exact synonym mesencephalic ventricle { database cross reference=ZFA:0000159 }
- - midbrain cerebral aqueduct has exact synonym midbrain ventricle { database cross reference=ZFA:0000159 }
- - midbrain cerebral aqueduct has exact synonym tectal ventricle { database cross reference=ZFA:0000159 }
- - midbrain cerebral aqueduct has related synonym mesencephalic vesicle { database cross reference=ZFA:0000159 }
Added
- + midbrain cerebral aqueduct has exact synonym medial tectal ventricle { database cross reference=ZFA:0000159 , has synonym type=synonym that is inappropriate for amniotes }
- + midbrain cerebral aqueduct has exact synonym mesencephalic ventricle { database cross reference=ZFA:0000159 , has synonym type=synonym that is inappropriate for amniotes }
- + midbrain cerebral aqueduct has exact synonym midbrain ventricle { database cross reference=ZFA:0000159 , has synonym type=synonym that is inappropriate for amniotes }
- + midbrain cerebral aqueduct has exact synonym tectal ventricle { database cross reference=ZFA:0000159 , has synonym type=synonym that is inappropriate for amniotes }
- + midbrain cerebral aqueduct has related synonym mesencephalic vesicle { database cross reference=ZFA:0000159 , has synonym type=synonym that is inappropriate for amniotes }

Changes for: third ventricle

Added
- + third ventricle SubClassOf contributes to morphology of some diencephalon

Changes for: epipubic bone

Deleted
- - epipubic bone external definition Epipubic bones are a pair of bones projecting forward from the pelvic bones of modern marsupials and of some fossil mammals: multituberculates, monotremes, and even basal eutherians (the ancestors of placental mammals). In modern marsupials the epipubic bones are often called “marsupial bones” because they support the mother’s pouch (‘marsupium’ is Latin for ‘pouch’), but their presence on other groups of mammals indicates that this was not their original function, which some researchers think was to assist locomotion by supporting some of the muscles that flex the thigh. The epipubic bones were first described in 1698 but their functions have remained unresolved. It has been suggested that they form part of a kinetic linkage stretching from the femur on one side to the ribs on the opposite side. This linkage is formed by a series of muscles: each epipubic bone is connected to the femur by the pectineus muscle, and to the ribs and vertebrae by the pyramidalis, rectus abdominis, and external and internal obliques. According to this hypothesis, the epipubic bones act as levers to stiffen the trunk during locomotion[Wikipedia:Epipubic_bone]. { source=http://en.wikipedia.org/wiki/Epipubic_bone }
Added
- + epipubic bone external definition Epipubic bones are a pair of bones projecting forward from the pelvic bones of modern marsupials and of some fossil mammals: multituberculates, monotremes, and even basal eutherians (the ancestors of placental mammals). In modern marsupials the epipubic bones are often called ‘marsupial bones’ because they support the mother’s pouch (‘marsupium’ is Latin for ‘pouch’), but their presence on other groups of mammals indicates that this was not their original function, which some researchers think was to assist locomotion by supporting some of the muscles that flex the thigh. The epipubic bones were first described in 1698 but their functions have remained unresolved. It has been suggested that they form part of a kinetic linkage stretching from the femur on one side to the ribs on the opposite side. This linkage is formed by a series of muscles: each epipubic bone is connected to the femur by the pectineus muscle, and to the ribs and vertebrae by the pyramidalis, rectus abdominis, and external and internal obliques. According to this hypothesis, the epipubic bones act as levers to stiffen the trunk during locomotion[Wikipedia:Epipubic_bone]. { source=http://en.wikipedia.org/wiki/Epipubic_bone }

Changes for: central canal of spinal cord

Added
- + central canal of spinal cord SubClassOf contributes to morphology of some spinal cord

Changes for: scala media

Added
- + scala media SubClassOf contributes to morphology of some cochlea

Changes for: alveolus of lung

Added
- + alveolus of lung SubClassOf contributes to morphology of some pulmonary acinus

Changes for: brainstem

Added
- + brainstem SubClassOf contributes to morphology of some brain

Changes for: gland of nictitating membrane

Added
- + gland of nictitating membrane SubClassOf gland of integumental system

Changes for: pharyngeal region of foregut

Deleted
- - pharyngeal region label pharyngeal region
Added
- + pharyngeal region of foregut has exact synonym pharyngeal region { database cross reference=EMAPA:16549 }
- + pharyngeal region of foregut label pharyngeal region of foregut

Changes for: uterine horn

Added
- + uterine horn SubClassOf contributes to morphology of some uterus

Changes for: cerebellar hemisphere

Added
- + cerebellar hemisphere SubClassOf contributes to morphology of some cerebellar cortex

Changes for: premaxilla

Added
- + premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: nucleus pulposus

Added
- + nucleus pulposus SubClassOf contributes to morphology of some intervertebral disk

Changes for: dorsal horn of spinal cord

Deleted
- - dorsal horn of spinal cord SubClassOf regional part of spinal cord
Added
- + dorsal horn of spinal cord SubClassOf contributes to morphology of some gray matter of spinal cord
- + dorsal horn of spinal cord SubClassOf spinal cord column

Changes for: ventral horn of spinal cord

Deleted
- - ventral horn of spinal cord SubClassOf regional part of spinal cord
Added
- + ventral horn of spinal cord SubClassOf contributes to morphology of some gray matter of spinal cord
- + ventral horn of spinal cord SubClassOf spinal cord column

Changes for: dorsal funiculus of spinal cord

Deleted
- - dorsal funiculus label dorsal funiculus
Added
- + dorsal funiculus of spinal cord has exact synonym dorsal funiculus { database cross reference=ZFA:0000501 }
- + dorsal funiculus of spinal cord label dorsal funiculus of spinal cord

Changes for: corpora quadrigemina

Added
- + corpora quadrigemina SubClassOf contributes to morphology of some midbrain tectum

Changes for: olfactory bulb

Added
- + olfactory bulb SubClassOf contributes to morphology of some olfactory lobe

Changes for: laterodorsal tegmental nucleus

Deleted
- - laterodorsal tegmental nucleus SubClassOf regional part of metencephalon
Added
- + laterodorsal tegmental nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: dorsal root of spinal cord

Added
- + dorsal root of spinal cord SubClassOf contributes to morphology of some spinal nerve

Changes for: ventral root of spinal cord

Added
- + ventral root of spinal cord SubClassOf contributes to morphology of some spinal nerve

Changes for: mammillary body

Added
- + mammillary body SubClassOf contributes to morphology of some diencephalon

Changes for: colon

Added
- + colon SubClassOf contributes to morphology of some large intestine

Changes for: caecum

Added
- + caecum SubClassOf contributes to morphology of some large intestine

Changes for: tympanic ring

Added
- + tympanic ring SubClassOf contributes to morphology of some middle ear

Changes for: spinal trigeminal tract

Deleted
- - spinal trigeminal tract SubClassOf part of some white matter

Changes for: anatomical line along groove

Deleted
- - anatomical line along groove SubClassOf part of some surface groove
Added
- + anatomical line along groove EquivalentTo anatomical line and in superficial part of some surface groove
- + anatomical line along groove SubClassOf in superficial part of some surface groove

Changes for: fundus of stomach

Added
- + fundus of stomach SubClassOf contributes to morphology of some stomach

Changes for: cardia of stomach

Added
- + cardia of stomach SubClassOf contributes to morphology of some stomach

Changes for: pyloric antrum

Added
- + pyloric antrum SubClassOf contributes to morphology of some pylorus

Changes for: pylorus

Added
- + pylorus SubClassOf contributes to morphology of some stomach

Changes for: wall of stomach

Added
- + wall of stomach SubClassOf contributes to morphology of some stomach

Changes for: macula of utricle of membranous labyrinth

Added
- + macula of utricle of membranous labyrinth SubClassOf contributes to morphology of some utricle of membranous labyrinth

Changes for: macula of saccule of membranous labyrinth

Added
- + macula of saccule of membranous labyrinth SubClassOf contributes to morphology of some saccule of membranous labyrinth

Changes for: interparietal bone

Added
- + interparietal bone SubClassOf contributes to morphology of some vault of skull

Changes for: biliary tree

Added
- + biliary tree SubClassOf contributes to morphology of some hepatobiliary system

Changes for: portal lobule

Added
- + portal lobule SubClassOf contributes to morphology of some liver parenchyma

Changes for: palatine aponeurosis

Added
- + palatine aponeurosis SubClassOf endoderm-derived structure

Changes for: mucosa of stomach

Deleted
- - mucosa of stomach comment This class was created automatically from a combination of ontologies
- - mucosa of stomach definition The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]. { database cross reference=http://en.wikipedia.org/wiki/Gastric_mucosa }
- - mucosa of stomach depicted by http://upload.wikimedia.org/wikipedia/commons/6/64/Illu_stomach2.jpg
- - mucosa of stomach depicted by http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg
Added
- + mucosa of stomach SubClassOf contributes to morphology of some wall of stomach
- + mucosa of stomach definition The mucosal layer that lines the stomach. { database cross reference=UBERON:cjm }
- + mucosa of stomach depicted by https://en.wikipedia.org/wiki/File:Normal_gastric_mucosa_intermed_mag.jpg
- + mucosa of stomach external definition The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general lining of the stomach. [WP,unvetted][Wikipedia:Gastric_mucosa]. { source=http://en.wikipedia.org/wiki/Gastric_mucosa }

Changes for: lingual septum

Added
- + lingual septum SubClassOf endoderm-derived structure

Changes for: epibranchial series

Added
- + epibranchial series SubClassOf endoderm-derived structure

Changes for: ceratobranchial series

Added
- + ceratobranchial series SubClassOf endoderm-derived structure

Changes for: pharyngeal membrane

Added
- + pharyngeal membrane SubClassOf endoderm-derived structure

Changes for: geschmacksstreifen

Added
- + geschmacksstreifen SubClassOf endoderm-derived structure

Changes for: intermediolateral nucleus

Deleted
- - intermediolateral nucleus SubClassOf ectoderm-derived structure
- - intermediolateral nucleus SubClassOf organ part
- - intermediolateral nucleus SubClassOf part of some spinal cord
- - intermediolateral nucleus comment This class was created automatically from a combination of ontologies
Added
- + intermediolateral nucleus SubClassOf nucleus of spinal cord
- + intermediolateral nucleus SubClassOf part of some lamina VII of gray matter of spinal cord

Changes for: lateral funiculus of spinal cord

Deleted
- - lateral funiculus label lateral funiculus
Added
- + lateral funiculus of spinal cord has exact synonym lateral funiculus { database cross reference=ZFA:0000533 }
- + lateral funiculus of spinal cord label lateral funiculus of spinal cord

Changes for: upper lobe of right lung

Added
- + upper lobe of right lung SubClassOf contributes to morphology of some right lung

Changes for: lower lobe of right lung

Added
- + lower lobe of right lung SubClassOf contributes to morphology of some right lung

Changes for: middle lobe of right lung

Added
- + middle lobe of right lung SubClassOf contributes to morphology of some right lung

Changes for: respiratory bronchiole

Added
- + respiratory bronchiole SubClassOf contributes to morphology of some pulmonary acinus

Changes for: substantia gelatinosa

Deleted
- - substantia gelatinosa SubClassOf ectoderm-derived structure
- - substantia gelatinosa SubClassOf organ part
- - substantia gelatinosa definition Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells. { database cross reference=http://en.wikipedia.org/wiki/Central_gelatinous_substance_of_spinal_cord_of_Rolando , database cross reference=MESH:A08.186.854.610.800 }
Added
- + substantia gelatinosa SubClassOf lamina of gray matter of spinal cord
- + substantia gelatinosa database cross reference FMA:68863
- + substantia gelatinosa definition Gelatinous-appearing material in the dorsal horn of the spinal cord, consisting chiefly of Golgi type II neurons and some larger nerve cells, corresponding to Rexed lamina II. { database cross reference=http://en.wikipedia.org/wiki/Central_gelatinous_substance_of_spinal_cord_of_Rolando , database cross reference=MESH:A08.186.854.610.800 }
- + substantia gelatinosa has exact synonym lamina II of gray matter of spinal cord { database cross reference=FMA:68863 }
- + substantia gelatinosa has exact synonym rexed lamina II { database cross reference=FMA:68863 }
- + substantia gelatinosa has exact synonym spinal lamina II { database cross reference=FMA:68863 }

Changes for: ventral funiculus of spinal cord

Deleted
- - ventral funiculus label ventral funiculus
Added
- + ventral funiculus of spinal cord has exact synonym ventral funiculus { database cross reference=ZFA:0000605 }
- + ventral funiculus of spinal cord label ventral funiculus of spinal cord

Changes for: nucleus raphe pallidus

Deleted
- - nucleus raphe pallidus SubClassOf regional part of medullary raphe nuclear complex

Changes for: internal naris

Added
- + internal naris has related synonym choanae { has synonym type=plural term }
- + internal naris has related synonym internal nares { has synonym type=plural term }

Changes for: lateral reticular nucleus

Deleted
- - lateral reticular nucleus SubClassOf regional part of medullary reticular formation

Changes for: oropharyngeal choana

Added
- + oropharyngeal choana SubClassOf endoderm-derived structure

Changes for: nucleus raphe magnus

Deleted
- - nucleus raphe magnus SubClassOf regional part of medullary raphe nuclear complex

Changes for: pontine nuclear group

Deleted
- - pontine nuclear group SubClassOf regional part of metencephalon
Added
- + pontine nuclear group SubClassOf structure with developmental contribution from neural crest

Changes for: spleen B cell corona

Added
- + spleen B cell corona SubClassOf contributes to morphology of some spleen secondary B follicle

Changes for: alveolar sac

Added
- + alveolar sac SubClassOf contributes to morphology of some pulmonary acinus

Changes for: endocardium of atrium

Added
- + endocardium of atrium SubClassOf contributes to morphology of some cardiac atrium

Changes for: barrel cortex

Deleted
- - barrel cortex SubClassOf regional part of cerebral cortex
Added
- + barrel cortex SubClassOf contributes to morphology of some primary somatosensory cortex
- + barrel cortex SubClassOf regional part of telencephalon

Changes for: nucleus prepositus

Deleted
- - nucleus prepositus SubClassOf regional part of metencephalon

Changes for: cerebellar nuclear complex

Deleted
- - cerebellar nuclear complex SubClassOf ectoderm-derived structure
- - cerebellar nuclear complex SubClassOf organ part
Added
- + cerebellar nuclear complex SubClassOf brain grey matter
- + cerebellar nuclear complex SubClassOf nuclear complex of neuraxis

Changes for: anterior lobe of cerebellum

Added
- + anterior lobe of cerebellum SubClassOf contributes to morphology of some cerebellar cortex

Changes for: vas deferens

Added
- + vas deferens SubClassOf contributes to morphology of some internal male genitalia

Changes for: respiratory airway

Added
- + respiratory airway has broad synonym airway { database cross reference=UBERON:cjm }
- + respiratory airway has broad synonym airways { database cross reference=UBERON:cjm , has synonym type=plural term }

Changes for: hilus of dentate gyrus

Deleted
- - hilus of dentate gyrus SubClassOf cerebral cortex lobe

Changes for: cartilaginous vertebral centrum

Deleted
- - cartilaginous vertebral centrum SubClassOf vertebral centrum
Added
- + cartilaginous vertebral centrum EquivalentTo vertebral centrum element and composed primarily of some cartilage tissue
- + cartilaginous vertebral centrum SubClassOf composed primarily of some cartilage tissue
- + cartilaginous vertebral centrum SubClassOf part of some vertebra cartilage element
- + cartilaginous vertebral centrum SubClassOf vertebral centrum element
- + cartilaginous vertebral centrum has narrow synonym postcaudal cartilaginous centrum { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/11746457 }

Changes for: locus ceruleus

Deleted
- - locus ceruleus SubClassOf regional part of metencephalon
Added
- + locus ceruleus SubClassOf structure with developmental contribution from neural crest

Changes for: reticulotegmental nucleus

Deleted
- - reticulotegmental nucleus SubClassOf regional part of metencephalon
Added
- + reticulotegmental nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: kidney

Added
- + kidney SubClassOf contributes to morphology of some renal system

Changes for: duodenum

Added
- + duodenum SubClassOf contributes to morphology of some small intestine

Changes for: jejunum

Added
- + jejunum SubClassOf contributes to morphology of some small intestine

Changes for: ileum

Added
- + ileum SubClassOf contributes to morphology of some small intestine

Changes for: gallbladder

Added
- + gallbladder SubClassOf contributes to morphology of some biliary tree

Changes for: smooth muscle of esophagus

Added
- + smooth muscle of esophagus SubClassOf contributes to morphology of some esophagus

Changes for: lobule of thymus

Added
- + lobule of thymus SubClassOf contributes to morphology of some thymus

Changes for: cerebellar cortex

Deleted
- - cerebellar cortex SubClassOf ectoderm-derived structure
- - cerebellar cortex SubClassOf organ part
Added
- + cerebellar cortex SubClassOf brain grey matter
- + cerebellar cortex SubClassOf contributes to morphology of some cerebellum

Changes for: chordate pharynx

Deleted
- - chordate pharynx SubClassOf continuous with some esophagus
- - chordate pharynx SubClassOf distally connected to some esophagus

Changes for: salivary gland

Added
- + salivary gland SubClassOf contributes to morphology of some digestive system

Changes for: chin

Added
- + chin SubClassOf endoderm-derived structure

Changes for: liver

Added
- + liver SubClassOf contributes to morphology of some hepatobiliary system

Changes for: small intestine

Added
- + small intestine SubClassOf contributes to morphology of some intestine

Changes for: hindlimb

Added
- + hindlimb database cross reference EMAPA:17253

Changes for: vestibulo-auditory system

Deleted
- - vestibulo-auditory system SubClassOf mechanosensory system
- - vestibulo-auditory system comment Auditory system is general anatomical term in FMA
- - vestibulo-auditory system database cross reference FMA:7192
- - vestibulo-auditory system database cross reference MA:0002443
- - vestibulo-auditory system database cross reference NIF_GrossAnatomy:nlx_anat_090817
- - vestibulo-auditory system database cross reference NeuroNames:2888
- - vestibulo-auditory system database cross reference OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
- - vestibulo-auditory system database cross reference UMLS:C0587901 { source=ncithesaurus:Auditory_System }
- - vestibulo-auditory system database cross reference http://en.wikipedia.org/wiki/Auditory_system
- - vestibulo-auditory system database cross reference http://linkedlifedata.com/resource/umls/id/C0587901
- - vestibulo-auditory system database cross reference ncithesaurus:Auditory_System
- - vestibulo-auditory system definition A sensory system for the sense of hearing[WP]. { database cross reference=http://en.wikipedia.org/wiki/Auditory_system }
- - vestibulo-auditory system depicted by http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg
Added
- + vestibulo-auditory system SubClassOf sensory system
- + vestibulo-auditory system definition Sensory system responsible for the perception of spatial orientation and auditory stimuli. { database cross reference=ZFA:0001138 }

Changes for: hypopharynx

Added
- + hypopharynx SubClassOf contributes to morphology of some chordate pharynx

Changes for: rectum

Added
- + rectum SubClassOf contributes to morphology of some large intestine

Changes for: nervous system commissure

Deleted
- - nervous system commissure definition axon tract that crosses the midline of the brain or spinal cord[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]. { database cross reference=http://purl.obolibrary.org/obo/uberon/tracker/300 , database cross reference=http://purl.obolibrary.org/obo/uberon/tracker/325 , database cross reference=NIF_GrossAnatomy:nlx_anat_20090513 }
Added
- + nervous system commissure definition axon tract that crosses the midline of the central nervous system[NIF, modified]. In the context of Drosophila refers to a broad band of axons connecting equivalent neuropils each side of the brain[FBbt]. { database cross reference=http://purl.obolibrary.org/obo/uberon/tracker/300 , database cross reference=http://purl.obolibrary.org/obo/uberon/tracker/325 , database cross reference=NIF_GrossAnatomy:nlx_anat_20090513 }

Changes for: endocardium of ventricle

Added
- + endocardium of ventricle SubClassOf contributes to morphology of some cardiac ventricle

Changes for: myocardium of ventricle

Added
- + myocardium of ventricle SubClassOf contributes to morphology of some cardiac ventricle

Changes for: lateral ventricle subependymal layer

Added
- + lateral ventricle subependymal layer SubClassOf contributes to morphology of some brain

Changes for: epidermis suprabasal layer

Deleted
- - epidermis suprabasal layer SubClassOf organ component layer
Added
- + epidermis suprabasal layer SubClassOf integumentary system layer

Changes for: spleen central arteriole

Added
- + spleen central arteriole SubClassOf contributes to morphology of some white pulp of spleen

Changes for: spleen trabecular vein

Added
- + spleen trabecular vein SubClassOf contributes to morphology of some spleen

Changes for: flocculus

Added
- + flocculus SubClassOf contributes to morphology of some cerebellar hemisphere

Changes for: parotid duct

Added
- + parotid duct SubClassOf contributes to morphology of some parotid gland
- + parotid duct SubClassOf endoderm-derived structure

Changes for: bony vertebral centrum

Deleted
- - vertebral centrum SubClassOf mesoderm-derived structure
- - vertebral centrum SubClassOf part of some vertebral element
- - vertebral centrum SubClassOf skeletal element
- - vertebral centrum comment AO notes: VSAO definition states it surrounds notochord but not applicable to post-natal. Editor notes: vertebra classes required generalization for cartilage columns // todo - add subclasses: acoelus, amphicoelus, procoelus, opsithocoelus, heterocoelus; pleurocentrum, intercentrum; todo: add developmental relationships
- - vertebral centrum database cross reference VSAO:0000183
- - vertebral centrum external definition Skeletal element that surrounds the notochord.[VSAO] { date retrieved=2012-08-14 , external class=VSAO:0000183 , ontology=VSAO , source=VSAO:curator }
- - vertebral centrum has exact synonym centra { database cross reference=PHENOSCAPE:ad , has synonym type=plural term }
- - vertebral centrum has exact synonym centre vertébral@fr { database cross reference=TAO:0000126 }
- - vertebral centrum has exact synonym centrum
- - vertebral centrum has exact synonym centrum of vertebra
- - vertebral centrum has exact synonym périchorde@fr { database cross reference=TAO:0000126 }
- - vertebral centrum has exact synonym vertebral centra { database cross reference=PHENOSCAPE:ad , has synonym type=plural term }
- - vertebral centrum has exact synonym vertebral centrum { database cross reference=MA:0001457 }
- - vertebral centrum has narrow synonym postcaudal cartilaginous centrum { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/11746457 }
- - vertebral centrum label vertebral centrum
Added
- + bony vertebral centrum EquivalentTo vertebral centrum element and composed primarily of some bone tissue
- + bony vertebral centrum SubClassOf composed primarily of some bone tissue
- + bony vertebral centrum SubClassOf endochondral bone
- + bony vertebral centrum SubClassOf part of some vertebra
- + bony vertebral centrum SubClassOf vertebral centrum element
- + bony vertebral centrum comment AO notes: VSAO definition states it surrounds notochord but not applicable to post-natal.
- + bony vertebral centrum has related synonym centra { database cross reference=PHENOSCAPE:ad , has synonym type=plural term }
- + bony vertebral centrum has related synonym vertebral centra { database cross reference=PHENOSCAPE:ad , has synonym type=plural term }
- + bony vertebral centrum has related synonym vertebral centrum { database cross reference=MA:0001457 }
- + bony vertebral centrum label bony vertebral centrum

Changes for: retrosplenial granular cortex

Deleted
- - retrosplenial granular cortex SubClassOf regional part of cerebral cortex
Added
- + retrosplenial granular cortex SubClassOf regional part of telencephalon

Changes for: velar vocal fold

Added
- + velar vocal fold SubClassOf endoderm-derived structure

Changes for: periventricular gray matter

Deleted
- - periventricular gray matter SubClassOf gray matter of neuraxis
Added
- + periventricular gray matter SubClassOf brain grey matter
- + periventricular gray matter SubClassOf part of some brain

Changes for: afferent lymphatic vessel

Added
- + afferent lymphatic vessel SubClassOf contributes to morphology of some lymph node

Changes for: spleen trabecular artery

Added
- + spleen trabecular artery SubClassOf contributes to morphology of some spleen

Changes for: hypomaxilla

Added
- + hypomaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: enteric nerve

Added
- + enteric nerve SubClassOf contributes to morphology of some enteric nervous system

Changes for: anterior limb of ceratobranchial 5 cartilage

Added
- + anterior limb of ceratobranchial 5 cartilage SubClassOf endoderm-derived structure

Changes for: basal process of palatoquadrate

Added
- + basal process of palatoquadrate SubClassOf endoderm-derived structure

Changes for: anterior limb of ceratobranchial 5 bone

Added
- + anterior limb of ceratobranchial 5 bone SubClassOf endoderm-derived structure

Changes for: basimandibulare

Added
- + basimandibulare SubClassOf endoderm-derived structure

Changes for: peyer’s patch follicle

Added
- + peyer’s patch follicle SubClassOf contributes to morphology of some Peyer’s patch

Changes for: pterygoid bone

Added
- + pterygoid bone SubClassOf contributes to morphology of some sphenoid bone pterygoid process
- + pterygoid bone SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pharyngobranchial tooth plate

Added
- + pharyngobranchial tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: ascending limb of ceratobranchial 5 cartilage

Added
- + ascending limb of ceratobranchial 5 cartilage SubClassOf endoderm-derived structure

Changes for: ascending process of palatoquadrate

Added
- + ascending process of palatoquadrate SubClassOf endoderm-derived structure

Changes for: ascending limb of ceratobranchial 5 bone

Added
- + ascending limb of ceratobranchial 5 bone SubClassOf endoderm-derived structure

Changes for: antorbital process

Deleted
- - antorbital process SubClassOf mesoderm-derived structure
Added
- + antorbital process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pelvic cavity

Deleted
- - pelvic cavity definition The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded “house”. It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness. { database cross reference=http://en.wikipedia.org/wiki/Pelvic_cavity }
Added
- + pelvic cavity definition The pelvic cavity is a body cavity that is bounded by the bones of the pelvis and which primarily contains reproductive organs, the urinary bladder, and the rectum. The pelvis is a marvel of physiology and is deceptively complex. It contains the lower urinary tract, reproductive system, lower digestive tract, major arteries and veins, muscle systems, nerve systems and bone systems. They all have to work together in a little crowded ‘house’. It can be affected by many different diseases and by many drugs in many different ways. One part may impact upon another, for example constipation may overload the rectum and compress the urinary bladder, or childbirth might damage the pudendal nerves and later lead to anal weakness. { database cross reference=http://en.wikipedia.org/wiki/Pelvic_cavity }

Changes for: anterior ramus of pterygoid

Deleted
- - anterior ramus of pterygoid SubClassOf mesoderm-derived structure
Added
- + anterior ramus of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: anterior process of pars palatina of maxilla

Deleted
- - anterior process of pars palatina of maxilla SubClassOf mesoderm-derived structure
Added
- + anterior process of pars palatina of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: angulosplenial coronoid process

Deleted
- - angulosplenial coronoid process SubClassOf mesoderm-derived structure
Added
- + angulosplenial coronoid process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: alary process of premaxilla

Deleted
- - alary process of premaxilla SubClassOf mesoderm-derived structure
Added
- + alary process of premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: subcutaneous adipose tissue

Added
- + subcutaneous adipose tissue SubClassOf contributes to morphology of some hypodermis

Changes for: adenohypophysis

Added
- + adenohypophysis SubClassOf contributes to morphology of some pituitary gland

Changes for: integument

Added
- + integument SubClassOf organ system subdivision
- + integument has related synonym vertebrate integument

Changes for: orbitosphenoid

Added
- + orbitosphenoid SubClassOf contributes to morphology of some sphenoid bone

Changes for: hyoid pre-muscle mass

Deleted
- - hyoid pre-muscle mass SubClassOf mesoderm-derived structure
Added
- + hyoid pre-muscle mass SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: cerebellar peduncular complex

Deleted
- - cerebellar peduncular complex SubClassOf regional part of brain
- - cerebellar peduncular complex SubClassOf regional part of cerebellar white matter
- - cerebellar peduncular complex database cross reference UMLS:C0228515 { source=ncithesaurus:Cerebellar_Peduncle }
- - cerebellar peduncular complex database cross reference http://linkedlifedata.com/resource/umls/id/C0228515
- - cerebellar peduncular complex database cross reference ncithesaurus:Cerebellar_Peduncle
Added
- + cerebellar peduncular complex SubClassOf anatomical cluster
- + cerebellar peduncular complex SubClassOf ectoderm-derived structure

Changes for: autopod region

Added
- + autopod region SubClassOf contributes to morphology of some limb

Changes for: mandibular process mesenchyme from head mesenchyme

Added
- + mandibular process mesenchyme from head mesenchyme SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: tooth cavity

Added
- + tooth cavity SubClassOf contributes to morphology of some calcareous tooth

Changes for: maxillary process mesenchyme from head mesenchyme

Deleted
- - maxillary process mesenchyme from head mesenchyme SubClassOf mesoderm-derived structure
Added
- + maxillary process mesenchyme from head mesenchyme SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: helix

Added
- + helix SubClassOf develops from some auditory hillocks, pharyngeal arch 1 derived
- + helix SubClassOf endoderm-derived structure
- + helix SubClassOf structure with developmental contribution from neural crest

Changes for: prostate duct

Added
- + prostate duct SubClassOf contributes to morphology of some prostate gland

Changes for: glottis

Added
- + glottis SubClassOf contributes to morphology of some larynx

Changes for: pharyngeal arch mesenchyme from head mesenchyme

Deleted
- - pharyngeal arch mesenchyme from head mesenchyme SubClassOf mesoderm-derived structure
Added
- + pharyngeal arch mesenchyme from head mesenchyme SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: long bone

Added
- + long bone SubClassOf contributes to morphology of some appendicular skeleton

Changes for: stapes base

Added
- + stapes base SubClassOf contributes to morphology of some stapes bone

Changes for: deltopectoral crest

Added
- + deltopectoral crest SubClassOf contributes to morphology of some humerus

Changes for: uterine artery

Added
- + uterine artery SubClassOf contributes to morphology of some uterus

Changes for: Reichert’s cartilage pre-cartilage condensation

Added
- + Reichert’s cartilage pre-cartilage condensation SubClassOf endoderm-derived structure

Changes for: pharyngeal arch mesenchyme from neural crest

Added
- + pharyngeal arch mesenchyme from neural crest SubClassOf endoderm-derived structure

Changes for: simian shelf

Deleted
- - simian shelf SubClassOf mesoderm-derived structure
Added
- + simian shelf SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: accessory foramina

Deleted
- - accessory foramina definition Foramina found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen “c” and “d” after Jarvik 1996
Added
- + accessory foramina definition Foramina found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen ‘c’ and ‘d’ after Jarvik 1996

Changes for: CA3 alveus

Deleted
- - CA3 alveus SubClassOf regional part of cerebral cortex
Added
- + CA3 alveus SubClassOf regional part of telencephalon

Changes for: CA1 alveus

Deleted
- - CA1 alveus SubClassOf regional part of cerebral cortex
Added
- + CA1 alveus SubClassOf regional part of telencephalon

Changes for: dermal layer of tongue

Added
- + dermal layer of tongue SubClassOf endoderm-derived structure

Changes for: hyale

Added
- + hyale SubClassOf endoderm-derived structure

Changes for: pyramidal layer of CA2

Deleted
- - pyramidal layer of CA2 SubClassOf regional part of cerebral cortex
Added
- + pyramidal layer of CA2 SubClassOf immediately deep to some hippocampus stratum radiatum
- + pyramidal layer of CA2 SubClassOf regional part of telencephalon

Changes for: pyramidal layer of CA1

Added
- + pyramidal layer of CA1 SubClassOf immediately deep to some hippocampus stratum radiatum

Changes for: frontomarginal sulcus

Deleted
- - frontomarginal sulcus SubClassOf cerebral cortex lobe
Added
- + frontomarginal sulcus SubClassOf part of some frontal lobe
- + frontomarginal sulcus SubClassOf sulcus of brain

Changes for: lamina of cerebellum

Deleted
- - lamina of cerebellum EquivalentTo lamina of neuraxis and part of some cerebellar cortex
- - lamina of cerebellum SubClassOf brain white matter
- - lamina of cerebellum SubClassOf part of some cerebellar cortex
Added
- + lamina of cerebellum EquivalentTo lamina of neuraxis and part of some cerebellum
- + lamina of cerebellum SubClassOf immediately deep to some granular layer of cerebellar cortex
- + lamina of cerebellum SubClassOf part of some cerebellum
- + lamina of cerebellum definition The white laminae of cerebellum is subdivision of the cerebellar cortex comprised of myelinated axons lying deep to the granule cell layer of the cerebellar cortex. { database cross reference=http://neurolex.org/wiki/Category:White_laminae_of_cerebellum }
- + lamina of cerebellum has exact synonym white lamina of cerebellum

Changes for: parietal pleura

Added
- + parietal pleura SubClassOf contributes to morphology of some pleura

Changes for: visceral pleura

Added
- + visceral pleura SubClassOf contributes to morphology of some pleura

Changes for: lamina of cerebral hemisphere

Deleted
- - lamina of cerebral hemisphere SubClassOf cerebral hemisphere white matter
Added
- + lamina of cerebral hemisphere SubClassOf structure with developmental contribution from neural crest

Changes for: superficial cervical fascia

Deleted
- - superficial cervical fascia SubClassOf organ component layer
Added
- + superficial cervical fascia SubClassOf integumentary system layer

Changes for: lamina of neuraxis

Deleted
- - lamina of neuraxis SubClassOf white matter
Added
- + lamina of neuraxis SubClassOf central nervous system cell part cluster
- + lamina of neuraxis SubClassOf part of some white matter

Changes for: lamina of diencephalon

Deleted
- - lamina of diencephalon SubClassOf diencephalic white matter

Changes for: synarcual region of vertebral column

Deleted
- - synarcual region of vertebral column comment “The synarcual is a structure incorporating the anterior vertebrae of the axial skeleton and occurs in vertebrate taxa such as the fossil group Placodermi and the Chondrichthyes (Holocephali, Batoidea)” DOI 10.1007/s00435-012-0169-9
Added
- + synarcual region of vertebral column comment ‘The synarcual is a structure incorporating the anterior vertebrae of the axial skeleton and occurs in vertebrate taxa such as the fossil group Placodermi and the Chondrichthyes (Holocephali, Batoidea)’ DOI 10.1007/s00435-012-0169-9

Changes for: autonomic nervous system

Added
- + autonomic nervous system SubClassOf contributes to morphology of some nervous system

Changes for: clitoris

Added
- + clitoris SubClassOf contributes to morphology of some external female genitalia

Changes for: layer of hippocampal field

Deleted
- - layer of hippocampal field SubClassOf ectoderm-derived structure
- - layer of hippocampal field SubClassOf organ component layer
- - layer of hippocampal field SubClassOf structure with developmental contribution from neural crest
Added
- + layer of hippocampal field SubClassOf layer of hippocampus

Changes for: palatoquadrate element

Added
- + palatoquadrate element SubClassOf endoderm-derived structure

Changes for: integumental system

Deleted
- - integumental system comment in FMA, integumentary system = integument + certain glands. Note that here we use integumental system in a general sense, covering a variety of metazoans
- - integumental system definition An organ system that protects the body from damage, comprising the epidermis, its adnexa and secreted products (including hair, glands, cuticles, scales, and nails), and any associated layers (e.g. the hypodermis). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP,modified]. { database cross reference=http://en.wikipedia.org/wiki/Integumentary_system }
Added
- + integumental system SubClassOf bounding layer of some multi-cellular organism
- + integumental system SubClassOf has part some outer epithelium
- + integumental system SubClassOf surrounded by some space surrounding organism
- + integumental system database cross reference AEO:0000154
- + integumental system database cross reference BILA:0000118
- + integumental system database cross reference EHDAA2_RETIRED:0003154
- + integumental system database cross reference galen:Surface
- + integumental system definition An organ system that protects the body from damage, forming the bounding layer of the organism and comprising the outer epithelial layer and any associated adnexa. In vertebrates, the integumental system consists of the epidermis, dermis plus associated glands and adnexa such as hair and scales. In invertebrates, the integumental system may include cuticle. { database cross reference=UBERON:cjm }
- + integumental system has alternative id UBERON:0007029
- + integumental system has related synonym body surface
- + integumental system has related synonym external covering of organism
- + integumental system has related synonym organism surface { database cross reference=EHDAA2:0003154 }
- + integumental system has related synonym surface { database cross reference=BILA:0000118 }

Changes for: cartilage tissue

Added
- + cartilage tissue SubClassOf contributes to morphology of some skeletal system

Changes for: fourth ventricle

Deleted
- - fourth ventricle has related synonym hindbrain ventricle { database cross reference=VHOG:0000006 }
- - fourth ventricle has related synonym ventricle of hindbrain { database cross reference=BTO:0003426 }
Added
- + fourth ventricle SubClassOf contributes to morphology of some hindbrain
- + fourth ventricle has related synonym hindbrain ventricle { database cross reference=VHOG:0000006 , has synonym type=synonym that is inappropriate for mammals }
- + fourth ventricle has related synonym ventricle of hindbrain { database cross reference=BTO:0003426 , has synonym type=synonym that is inappropriate for mammals }

Changes for: pyramidal layer of CA3

Added
- + pyramidal layer of CA3 SubClassOf immediately deep to some hippocampus stratum lucidum

Changes for: visceral serous pericardium

Added
- + visceral serous pericardium SubClassOf contributes to morphology of some pericardium

Changes for: striatum

Added
- + striatum SubClassOf contributes to morphology of some collection of basal ganglia

Changes for: pituitary stalk

Added
- + pituitary stalk SubClassOf contributes to morphology of some neurohypophysis

Changes for: pars intermedia of adenohypophysis

Added
- + pars intermedia of adenohypophysis SubClassOf contributes to morphology of some pituitary gland

Changes for: myenteric nerve plexus

Added
- + myenteric nerve plexus SubClassOf contributes to morphology of some enteric nervous system

Changes for: primary visual cortex

Added
- + primary visual cortex SubClassOf contributes to morphology of some cerebral cortex
- + primary visual cortex SubClassOf contributes to morphology of some occipital lobe

Changes for: lens fiber

Added
- + lens fiber SubClassOf contributes to morphology of some lens of camera-type eye

Changes for: lenticular fasciculus

Deleted
- - lenticular fasciculus SubClassOf part of some white matter

Changes for: decidua

Added
- + decidua SubClassOf contributes to morphology of some placenta

Changes for: thoracic spinal cord lateral horn

Deleted
- - thoracic spinal cord lateral horn SubClassOf thoracic spinal cord gray matter

Changes for: iris epithelium

Added
- + iris epithelium SubClassOf contributes to morphology of some iris

Changes for: crista dentalis of maxilla

Deleted
- - crista dentalis of maxilla SubClassOf mesoderm-derived structure
Added
- + crista dentalis of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: crista dentalis of premaxilla

Deleted
- - crista dentalis of premaxilla SubClassOf mesoderm-derived structure
Added
- + crista dentalis of premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: crista lateralis of premaxilla

Deleted
- - crista lateralis of premaxilla SubClassOf mesoderm-derived structure
Added
- + crista lateralis of premaxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: dilatatio alaris

Deleted
- - dilatatio alaris SubClassOf mesoderm-derived structure
Added
- + dilatatio alaris SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: upper part of vagina

Added
- + upper part of vagina SubClassOf contributes to morphology of some vagina
- + upper part of vagina SubClassOf develops from some Mullerian duct

Changes for: dorsum of tongue

Added
- + dorsum of tongue SubClassOf endoderm-derived structure

Changes for: utricle valve

Added
- + utricle valve SubClassOf contributes to morphology of some utricle of membranous labyrinth

Changes for: cingulum of brain

Deleted
- - cingulum of brain SubClassOf ectoderm-derived structure
Added
- + cingulum of brain SubClassOf contributes to morphology of some brain white matter
- + cingulum of brain SubClassOf tract of brain

Changes for: styloid process of temporal bone

Added
- + styloid process of temporal bone SubClassOf contributes to morphology of some temporal bone

Changes for: cutaneous elastic tissue

Added
- + cutaneous elastic tissue SubClassOf contributes to morphology of some zone of skin

Changes for: operculum of brain

Deleted
- - operculum of brain SubClassOf part of some cerebral hemisphere
Added
- + operculum of brain SubClassOf part of some frontal lobe

Changes for: gonial bone

Added
- + gonial bone SubClassOf contributes to morphology of some auditory ossicle
- + gonial bone SubClassOf endoderm-derived structure

Changes for: sympathetic afferent fiber

Added
- + sympathetic afferent fiber SubClassOf contributes to morphology of some sympathetic nervous system

Changes for: spinal cord motor column

Added
- + spinal cord motor column SubClassOf contributes to morphology of some spinal cord

Changes for: fourth ventricle median aperture

Added
- + fourth ventricle median aperture SubClassOf contributes to morphology of some fourth ventricle

Changes for: fourth ventricle lateral aperture

Added
- + fourth ventricle lateral aperture SubClassOf contributes to morphology of some fourth ventricle

Changes for: subarcuate fossa

Added
- + subarcuate fossa SubClassOf contributes to morphology of some temporal bone

Changes for: pharyngeal arch mesenchymal region

Added
- + pharyngeal arch mesenchymal region SubClassOf endoderm-derived structure

Changes for: cervical vertebra 1 arcus anterior

Added
- + cervical vertebra 1 arcus anterior SubClassOf contributes to morphology of some vertebral bone 1

Changes for: hyoid bone greater horn

Added
- + hyoid bone greater horn SubClassOf contributes to morphology of some hyoid bone

Changes for: hyoid bone body

Added
- + hyoid bone body SubClassOf contributes to morphology of some hyoid bone

Changes for: hyoid apparatus

Added
- + hyoid apparatus SubClassOf endoderm-derived structure

Changes for: hyoid bone lesser horn

Deleted
- - hyoid bone lesser horn SubClassOf endoderm-derived structure
Added
- + hyoid bone lesser horn SubClassOf contributes to morphology of some hyoid bone

Changes for: zone of hyoid bone

Added
- + zone of hyoid bone SubClassOf endoderm-derived structure

Changes for: thymus corticomedullary boundary

Added
- + thymus corticomedullary boundary SubClassOf contributes to morphology of some lobule of thymus

Changes for: Hassall’s corpuscle

Added
- + Hassall’s corpuscle SubClassOf contributes to morphology of some medulla of thymus
- + Hassall’s corpuscle SubClassOf contributes to morphology of some thymus epithelium

Changes for: footplate of pars media plectri

Added
- + footplate of pars media plectri SubClassOf endoderm-derived structure

Changes for: brain ventricle/choroid plexus

Added
- + brain ventricle/choroid plexus SubClassOf contributes to morphology of some brain

Changes for: anterior buccal gland

Added
- + anterior buccal gland SubClassOf contributes to morphology of some mouth mucosa

Changes for: tubal tonsil

Added
- + tubal tonsil SubClassOf contributes to morphology of some tonsillar ring

Changes for: placenta labyrinth

Added
- + placenta labyrinth SubClassOf contributes to morphology of some placenta

Changes for: tonsil

Added
- + tonsil SubClassOf contributes to morphology of some tonsillar ring

Changes for: somatic sensory system

Added
- + somatic sensory system SubClassOf contributes to morphology of some somatic nervous system

Changes for: cerebellum anterior vermis

Added
- + cerebellum anterior vermis SubClassOf contributes to morphology of some anterior lobe of cerebellum

Changes for: palatopharyngeus muscle

Deleted
- - palatopharyngeus muscle SubClassOf endoderm-derived structure

Changes for: molar crown

Added
- + molar crown SubClassOf contributes to morphology of some molar tooth

Changes for: posterior stroma of cornea

Added
- + posterior stroma of cornea SubClassOf contributes to morphology of some substantia propria of cornea

Changes for: anterior stroma of cornea

Added
- + anterior stroma of cornea SubClassOf contributes to morphology of some substantia propria of cornea

Changes for: ocular fundus

Added
- + ocular fundus SubClassOf contributes to morphology of some posterior segment of eyeball

Changes for: inner ear canal

Added
- + inner ear canal SubClassOf contributes to morphology of some internal ear

Changes for: pancreatic epithelial bud

Deleted
- - pancreatic bud label pancreatic bud
Added
- + pancreatic epithelial bud has exact synonym pancreatic bud { database cross reference=ZFA:0001390 }
- + pancreatic epithelial bud label pancreatic epithelial bud

Changes for: retrosplenial region

Deleted
- - retrosplenial region SubClassOf regional part of cerebral cortex
Added
- + retrosplenial region SubClassOf regional part of telencephalon

Changes for: conducting system of heart

Added
- + conducting system of heart SubClassOf contributes to morphology of some heart

Changes for: sinoatrial node

Added
- + sinoatrial node SubClassOf contributes to morphology of some conducting system of heart

Changes for: dorsal iliac process

Deleted
- - dorsal iliac process comment It spresences gives the ilium a “double headed” appearence.
Added
- + dorsal iliac process comment It spresences gives the ilium a ‘double headed’ appearence.

Changes for: atrioventricular node

Added
- + atrioventricular node SubClassOf contributes to morphology of some conducting system of heart

Changes for: trunk armor pectoral fenestra

Deleted
- - trunk armor pectoral fenestra comment Disjoint from “pectoral fenestra” of Amphibians (AAO_0000779).
Added
- + trunk armor pectoral fenestra comment Disjoint from ‘pectoral fenestra’ of Amphibians (AAO_0000779).

Changes for: atrioventricular bundle

Added
- + atrioventricular bundle SubClassOf contributes to morphology of some conducting system of heart

Changes for: obsolete posterior iliac process

Deleted
- - obsolete posterior iliac process definition Distinct posterior most of the two “double heads” of the blade of the ilium.
Added
- + obsolete posterior iliac process definition Distinct posterior most of the two ‘double heads’ of the blade of the ilium.

Changes for: purkinje fiber

Added
- + purkinje fiber SubClassOf contributes to morphology of some conducting system of heart

Changes for: sensory dissociation area

Added
- + sensory dissociation area SubClassOf contributes to morphology of some parietal lobe

Changes for: transverse gyrus of Heschl

Added
- + transverse gyrus of Heschl SubClassOf contributes to morphology of some auditory cortex

Changes for: bulbo-urethral gland

Added
- + bulbo-urethral gland SubClassOf contributes to morphology of some internal male genitalia

Changes for: tympanic membrane

Added
- + tympanic membrane SubClassOf contributes to morphology of some middle ear
- + tympanic membrane SubClassOf endoderm-derived structure

Changes for: dura mater

Deleted
- - dura mater database cross reference EMAPA:17776
Added
- + dura mater database cross reference EMAPA:32664

Changes for: hyolaryngeal complex

Added
- + hyolaryngeal complex SubClassOf endoderm-derived structure

Changes for: vomer

Added
- + vomer SubClassOf contributes to morphology of some facial skeleton

Changes for: maxilla

Added
- + maxilla SubClassOf contributes to morphology of some jaw skeleton
- + maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: nasolacrimal duct

Added
- + nasolacrimal duct SubClassOf contributes to morphology of some lacrimal apparatus
- + nasolacrimal duct SubClassOf endoderm-derived structure

Changes for: bile duct

Added
- + bile duct SubClassOf contributes to morphology of some biliary tree

Changes for: middle temporal sulcus

Deleted
- - middle temporal sulcus SubClassOf cerebral cortex lobe

Changes for: layer of neocortex

Deleted
- - layer of neocortex SubClassOf ectoderm-derived structure
- - layer of neocortex SubClassOf organ part
Added
- + layer of neocortex EquivalentTo organ component layer and part of some neocortex
- + layer of neocortex SubClassOf central nervous system gray matter layer

Changes for: myocardium of atrium

Added
- + myocardium of atrium SubClassOf contributes to morphology of some cardiac atrium

Changes for: layer of hippocampus

Deleted
- - layer of hippocampus SubClassOf ectoderm-derived structure
- - layer of hippocampus SubClassOf organ component layer
Added
- + layer of hippocampus EquivalentTo central nervous system gray matter layer and part of some Ammon’s horn
- + layer of hippocampus SubClassOf central nervous system gray matter layer
- + layer of hippocampus SubClassOf contributes to morphology of some Ammon’s horn

Changes for: layer of dentate gyrus

Deleted
- - layer of dentate gyrus SubClassOf ectoderm-derived structure
- - layer of dentate gyrus SubClassOf organ part
Added
- + layer of dentate gyrus EquivalentTo central nervous system gray matter layer and part of some dentate gyrus of hippocampal formation
- + layer of dentate gyrus SubClassOf central nervous system gray matter layer

Changes for: nasal mucus

Deleted
- - nasal mucus EquivalentTo mucus and produced by some respiratory system mucosa
- - nasal mucus SubClassOf mucus
- - nasal mucus SubClassOf produced by some respiratory system mucosa
- - nasal mucus definition In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well. { database cross reference=Respiratory system }
Added
- + nasal mucus EquivalentTo mucus and produced by some respiratory segment of nasal mucosa
- + nasal mucus SubClassOf produced by some respiratory segment of nasal mucosa
- + nasal mucus SubClassOf respiratory system mucus
- + nasal mucus definition mucus produced in the nasal cavity, by the respiratory segment of the nasal mucosa. { database cross reference=UBERON:cjm }

Changes for: nucleus of brain

Deleted
- - nucleus of brain SubClassOf regional part of brain
- - nucleus of brain comment We considered merging with ‘neural nucleus’
- - nucleus of brain database cross reference http://en.wikipedia.org/wiki/Nucleus_(neuroanatomy)
- - nucleus of brain definition Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia] { database cross reference=http://en.wikipedia.org/wiki/Nucleus_(neuroanatomy) , database cross reference=FMA:83840 }
Added
- + nucleus of brain definition A neural nucleus that is part of the brain. { database cross reference=UBERON:cjm }

Changes for: corpus callosum

Added
- + corpus callosum SubClassOf contributes to morphology of some telencephalon

Changes for: submandibular duct

Added
- + submandibular duct SubClassOf contributes to morphology of some submandibular gland
- + submandibular duct SubClassOf endoderm-derived structure

Changes for: white matter of medulla oblongata

Deleted
- - white matter of medulla oblongata has related synonym MEDULLARY WHITE MATTER { database cross reference=BAMS:mw }
Added
- + white matter of medulla oblongata has related synonym medullary white matter { database cross reference=BAMS:mw }

Changes for: occipital gyrus

Deleted
- - occipital gyrus SubClassOf cerebral cortex lobe

Changes for: cerebrocerebellum

Added
- + cerebrocerebellum SubClassOf contributes to morphology of some cerebellar hemisphere

Changes for: descending thoracic aorta

Added
- + descending thoracic aorta SubClassOf contributes to morphology of some descending aorta
- + descending thoracic aorta SubClassOf contributes to morphology of some thoracic aorta

Changes for: hippocampus pyramidal layer

Added
- + hippocampus pyramidal layer EquivalentTo layer of hippocampus and immediately superficial to some hippocampus stratum oriens
- + hippocampus pyramidal layer SubClassOf immediately superficial to some hippocampus stratum oriens

Changes for: hippocampus fimbria

Deleted
- - hippocampus fimbria SubClassOf ectoderm-derived structure
- - hippocampus fimbria SubClassOf organ part
- - hippocampus fimbria SubClassOf part of some hippocampal formation
- - hippocampus fimbria comment Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn’t always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract. Neuronames and others include this as part of the hippocampal formation (MM)
Added
- + hippocampus fimbria SubClassOf central nervous system cell part cluster
- + hippocampus fimbria SubClassOf part of some white matter of telencephalon

Changes for: white matter of spinal cord

Added
- + white matter of spinal cord SubClassOf contributes to morphology of some spinal cord

Changes for: gray matter of spinal cord

Deleted
- - gray matter of spinal cord has exact synonym gray matter of neuraxis of spinal cord { database cross reference=OBOL:automatic }
- - gray matter of spinal cord has exact synonym spinal cord gray matter of neuraxis { database cross reference=OBOL:automatic }
Added
- + gray matter of spinal cord SubClassOf contributes to morphology of some spinal cord
- + gray matter of spinal cord has exact synonym gray matter of spinal cord { database cross reference=OBOL:automatic }

Changes for: white matter

Deleted
- - white matter SubClassOf has part some myelinated nerve fiber
- - white matter SubClassOf neural tissue
Added
- + white matter SubClassOf composed primarily of some myelinated nerve fiber

Changes for: glomerular mesangium

Added
- + glomerular mesangium SubClassOf contributes to morphology of some renal glomerulus

Changes for: middle frontal sulcus

Deleted
- - middle frontal sulcus SubClassOf cerebral cortex lobe

Changes for: cervical spinal cord lateral horn

Deleted
- - cervical spinal cord lateral horn SubClassOf cervical spinal cord gray matter

Changes for: mesenchyme of submandibular gland primordium

Added
- + mesenchyme of submandibular gland primordium SubClassOf endoderm-derived structure

Changes for: mesenchyme of sublingual gland primordium

Added
- + mesenchyme of sublingual gland primordium SubClassOf endoderm-derived structure

Changes for: lateral lingual swelling epithelium

Added
- + lateral lingual swelling epithelium SubClassOf endo-epithelium

Changes for: maxillary process mesenchyme

Added
- + maxillary process mesenchyme SubClassOf endoderm-derived structure

Changes for: lamina anterior of pars facialis

Deleted
- - lamina anterior of pars facialis SubClassOf mesoderm-derived structure
Added
- + lamina anterior of pars facialis SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: bulb of aorta

Added
- + bulb of aorta SubClassOf contributes to morphology of some ascending aorta

Changes for: sinotubular junction

Added
- + sinotubular junction SubClassOf contributes to morphology of some ascending aorta

Changes for: CA3 field of hippocampus

Added
- + CA3 field of hippocampus SubClassOf contributes to morphology of some Ammon’s horn

Changes for: CA2 field of hippocampus

Added
- + CA2 field of hippocampus SubClassOf contributes to morphology of some Ammon’s horn

Changes for: CA1 field of hippocampus

Added
- + CA1 field of hippocampus SubClassOf contributes to morphology of some Ammon’s horn

Changes for: subdivision of hippocampus

Deleted
- - subdivision of hippocampus SubClassOf regional part of cerebral cortex
Added
- + subdivision of hippocampus SubClassOf contributes to morphology of some Ammon’s horn
- + subdivision of hippocampus SubClassOf regional part of telencephalon

Changes for: medial ramus of pterygoid

Deleted
- - medial ramus of pterygoid SubClassOf mesoderm-derived structure
Added
- + medial ramus of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: margo orbitalis of pterygoid

Deleted
- - margo orbitalis of pterygoid SubClassOf mesoderm-derived structure
Added
- + margo orbitalis of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: margo orbitalis of maxilla

Deleted
- - margo orbitalis of maxilla SubClassOf mesoderm-derived structure
Added
- + margo orbitalis of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: margo mandibularis of pterygoid

Deleted
- - margo mandibularis of pterygoid SubClassOf mesoderm-derived structure
Added
- + margo mandibularis of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: margo tympanicus of pterygoid

Deleted
- - margo tympanicus of pterygoid SubClassOf mesoderm-derived structure
Added
- + margo tympanicus of pterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: dental epithelium

Added
- + dental epithelium SubClassOf endo-epithelium

Changes for: tooth cingulid

Added
- + tooth cingulid SubClassOf endoderm-derived structure

Changes for: premaxilla dentigerous process

Deleted
- - premaxilla dentigerous process SubClassOf mesoderm-derived structure
Added
- + premaxilla dentigerous process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: thymus epithelium

Added
- + thymus epithelium SubClassOf contributes to morphology of some thymus
- + thymus epithelium database cross reference ZFA:0005779

Changes for: pancreatic duct

Added
- + pancreatic duct SubClassOf contributes to morphology of some exocrine pancreas

Changes for: psoas muscle

Deleted
- - psoas muscle definition A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek “psoa”, the plural meaning “muscles of the loin”. It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology. { database cross reference=http://en.wikipedia.org/wiki/Psoas , database cross reference=MESH:A02.633.567.825 }
Added
- + psoas muscle definition A powerful flexor of the thigh at the hip joint (psoas major) and a weak flexor of the trunk and lumbar spinal column (psoas minor). Psoas is derived from the Greek ‘psoa’, the plural meaning ‘muscles of the loin’. It is a common site of infection manifesting as abscess (PSOAS ABSCESS). The psoas muscles and their fibers are also used frequently in experiments in muscle physiology. { database cross reference=http://en.wikipedia.org/wiki/Psoas , database cross reference=MESH:A02.633.567.825 }

Changes for: mandibular rhamphotheca

Added
- + mandibular rhamphotheca SubClassOf endoderm-derived structure

Changes for: cremaster muscle

Added
- + cremaster muscle SubClassOf contributes to morphology of some musculature

Changes for: ceratoglossus

Deleted
- - ceratoglossus SubClassOf ectoderm-derived structure
Added
- + ceratoglossus SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: auditory hillocks

Deleted
- - auditory hillocks homology notes Mammals have a third type of tympanic ear. An external flap, the auricle or pinna, helps funnel sound waves down the external acoustic meatus to the tympanic membrane.[inferred][VHOG] { date retrieved=2012-09-17 , external class=VHOG:0001364 , ontology=VHOG , source=http://bgee.unil.ch/ , source=ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.420 }
Added
- + auditory hillocks SubClassOf anatomical cluster
- + auditory hillocks SubClassOf part of some embryo
- + auditory hillocks definition A collection of protruberances derived from pharyngeal arches 1 and 2 that develop into the folds of the pinna and gradually shift upwards and backwards to their final position on the head. { database cross reference=Development }
- + auditory hillocks has exact synonym auditory hillock of Hiss
- + auditory hillocks has related synonym hillock of Hiss

Changes for: conchal part of pinna

Added
- + conchal part of pinna SubClassOf develops from some auditory hillocks, pharyngeal arch 2 derived
- + conchal part of pinna SubClassOf endoderm-derived structure
- + conchal part of pinna SubClassOf structure with developmental contribution from neural crest

Changes for: cloacal membrane

Added
- + cloacal membrane SubClassOf contributes to morphology of some embryonic cloaca

Changes for: cervical sinus of His

Deleted
- - cervical sinus SubClassOf embryonic structure
- - cervical sinus label cervical sinus
Added
- + cervical sinus of His SubClassOf part of some embryo
- + cervical sinus of His SubClassOf pit
- + cervical sinus of His has exact synonym cervical sinus { database cross reference=EHDAA2:0000078 }
- + cervical sinus of His label cervical sinus of His

Changes for: spleen germinal center

Added
- + spleen germinal center SubClassOf contributes to morphology of some spleen secondary B follicle

Changes for: metapterygoid

Added
- + metapterygoid SubClassOf endoderm-derived structure

Changes for: quadrate ventral process

Added
- + quadrate ventral process SubClassOf endoderm-derived structure

Changes for: lingual swellings

Added
- + lingual swellings SubClassOf endoderm-derived structure

Changes for: nasolacrimal groove

Added
- + nasolacrimal groove SubClassOf endo-epithelium

Changes for: Meckel’s cartilage pre-cartilage condensation

Added
- + Meckel’s cartilage pre-cartilage condensation SubClassOf endoderm-derived structure

Changes for: lens pit

Deleted
- - lens pit SubClassOf immature eye
Added
- + lens pit SubClassOf pit

Changes for: subopercle

Added
- + subopercle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: preopercle horizontal limb

Added
- + preopercle horizontal limb SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: otic pit

Deleted
- - otic pit SubClassOf developing anatomical structure
Added
- + otic pit SubClassOf pit

Changes for: pharyngobranchial 3 bone uncinate process

Added
- + pharyngobranchial 3 bone uncinate process SubClassOf endoderm-derived structure

Changes for: pharyngobranchial 4 bone uncinate process

Added
- + pharyngobranchial 4 bone uncinate process SubClassOf endoderm-derived structure

Changes for: preopercle

Added
- + preopercle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: opercle

Added
- + opercle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: multi cell component structure

Added
- + multi cell component structure SubClassOf composed primarily of some cell part

Changes for: ascending limb of loop of Henle

Added
- + ascending limb of loop of Henle SubClassOf contributes to morphology of some loop of Henle

Changes for: posttemporal fossa

Deleted
- - posttemporal fossa comment Chen 1994 gives these two synonyms: “temporal fossa”, Gauba 1967; and “temporal groove”, Mahajan 1966.
Added
- + posttemporal fossa comment Chen 1994 gives these two synonyms: ‘temporal fossa’, Gauba 1967; and ‘temporal groove’, Mahajan 1966.

Changes for: urohyal lateral process

Deleted
- - urohyal lateral process SubClassOf ectoderm-derived structure
- - urohyal lateral process SubClassOf mesoderm-derived structure
Added
- + urohyal lateral process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: lateral line scale

Deleted
- - lateral line scale SubClassOf regional part of nervous system

Changes for: urohyal median process

Deleted
- - urohyal median process SubClassOf ectoderm-derived structure
- - urohyal median process SubClassOf mesoderm-derived structure
Added
- + urohyal median process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: vestibular nucleus

Deleted
- - vestibular nucleus SubClassOf regional part of vestibular nuclear complex

Changes for: hilum of inferior olivary complex

Deleted
- - hilum of inferior olivary complex SubClassOf white matter of medulla oblongata
Added
- + hilum of inferior olivary complex SubClassOf structure with developmental contribution from neural crest

Changes for: hilum of neuraxis

Deleted
- - hilum of neuraxis SubClassOf white matter
Added
- + hilum of neuraxis SubClassOf central nervous system cell part cluster
- + hilum of neuraxis SubClassOf part of some white matter

Changes for: vestibulum vaginae

Added
- + vestibulum vaginae SubClassOf contributes to morphology of some external female genitalia

Changes for: hyomandibular condyle for the opercle

Added
- + hyomandibular condyle for the opercle SubClassOf endoderm-derived structure

Changes for: cerebellum posterior vermis

Added
- + cerebellum posterior vermis SubClassOf contributes to morphology of some posterior lobe of cerebellum

Changes for: tarsal gland acinus

Added
- + tarsal gland acinus SubClassOf contributes to morphology of some tarsal gland

Changes for: cerebellum intermediate zone

Added
- + cerebellum intermediate zone SubClassOf contributes to morphology of some cerebellar hemisphere

Changes for: olfactory bulb layer

Added
- + olfactory bulb layer SubClassOf contributes to morphology of some olfactory bulb

Changes for: posterior lobe of cerebellum

Added
- + posterior lobe of cerebellum SubClassOf contributes to morphology of some cerebellar cortex

Changes for: cerebellum hemisphere lobule

Added
- + cerebellum hemisphere lobule SubClassOf contributes to morphology of some cerebellar hemisphere

Changes for: cerebellum lobule

Added
- + cerebellum lobule SubClassOf contributes to morphology of some cerebellar cortex

Changes for: dorsal accessory inferior olivary nucleus

Added
- + dorsal accessory inferior olivary nucleus database cross reference BAMS:IOda
- + dorsal accessory inferior olivary nucleus database cross reference NIF_GrossAnatomy:nlx_anat_100310
- + dorsal accessory inferior olivary nucleus has alternative id UBERON:0014288
- + dorsal accessory inferior olivary nucleus has exact synonym DAO { database cross reference=NIF_GrossAnatomy:nlx_anat_100310 , has synonym type=abbreviation }
- + dorsal accessory inferior olivary nucleus has exact synonym dorsal accessory olive { database cross reference=NIF_GrossAnatomy:nlx_anat_100310 }
- + dorsal accessory inferior olivary nucleus has related synonym inferior olivary complex dorsalaccessory nucleus { database cross reference=BAMS:IOda }

Changes for: superior olivary nucleus

Deleted
- - superior olivary nucleus SubClassOf regional part of metencephalon
Added
- + superior olivary nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: inferior olivary nucleus

Deleted
- - inferior olivary nucleus SubClassOf regional part of inferior olivary complex

Changes for: lingual tonsil

Added
- + lingual tonsil SubClassOf contributes to morphology of some tonsillar ring

Changes for: ventral hypohyal bone

Added
- + ventral hypohyal bone SubClassOf endoderm-derived structure

Changes for: corticomedial nuclear complex

Deleted
- - corticomedial nuclear complex SubClassOf cerebral hemisphere grey matter
Added
- + corticomedial nuclear complex SubClassOf cortex of temporal lobe

Changes for: basolateral amygdaloid nuclear complex

Deleted
- - basolateral amygdaloid nuclear complex SubClassOf cerebral hemisphere grey matter
Added
- + basolateral amygdaloid nuclear complex SubClassOf cortex of temporal lobe

Changes for: adductor mandibulae complex

Deleted
- - adductor mandibulae complex SubClassOf mesoderm-derived structure
Added
- + adductor mandibulae complex SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: preopercle vertical limb

Added
- + preopercle vertical limb SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: funiculus of neuraxis

Added
- + funiculus of neuraxis SubClassOf central nervous system cell part cluster
- + funiculus of neuraxis SubClassOf part of some white matter

Changes for: funiculus of spinal cord

Deleted
- - funiculus of spinal cord SubClassOf segment of white matter of spinal cord
Added
- + funiculus of spinal cord EquivalentTo funiculus of neuraxis and part of some spinal cord
- + funiculus of spinal cord SubClassOf part of some white matter of spinal cord

Changes for: superior colliculus superficial gray layer

Added
- + superior colliculus superficial gray layer SubClassOf in superficial part of some superior colliculus

Changes for: gill raker

Added
- + gill raker SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: lamina I of gray matter of spinal cord

Deleted
- - lamina I of gray matter of spinal cord SubClassOf regional part of spinal cord
Added
- + lamina I of gray matter of spinal cord SubClassOf lamina of gray matter of spinal cord

Changes for: lateral occipital cortex

Deleted
- - lateral occipital cortex SubClassOf cerebral cortex lobe
Added
- + lateral occipital cortex SubClassOf occipital gyrus

Changes for: cutaneous microfibril

Added
- + cutaneous microfibril SubClassOf contributes to morphology of some cutaneous elastic tissue

Changes for: inner epithelial layer of tympanic membrane

Deleted
- - inner epithelial layer of tympanic membrane SubClassOf endo-epithelium

Changes for: mucosa of nasolacrimal duct

Added
- + mucosa of nasolacrimal duct SubClassOf endoderm-derived structure
- + mucosa of nasolacrimal duct SubClassOf integumentary system layer

Changes for: mucosa of upper lip

Added
- + mucosa of upper lip SubClassOf endoderm-derived structure
- + mucosa of upper lip SubClassOf integumentary system layer

Changes for: mucosa of lower lip

Added
- + mucosa of lower lip SubClassOf endoderm-derived structure
- + mucosa of lower lip SubClassOf integumentary system layer

Changes for: chorionic plate

Added
- + chorionic plate SubClassOf contributes to morphology of some chorion

Changes for: caudal ganglionic eminence

Added
- + caudal ganglionic eminence SubClassOf contributes to morphology of some ganglionic eminence

Changes for: lateral ganglionic eminence

Added
- + lateral ganglionic eminence SubClassOf contributes to morphology of some ganglionic eminence

Changes for: medial ganglionic eminence

Added
- + medial ganglionic eminence SubClassOf contributes to morphology of some ganglionic eminence

Changes for: mucosa of tongue

Added
- + mucosa of tongue SubClassOf endoderm-derived structure

Changes for: mucosa of lacrimal canaliculus

Added
- + mucosa of lacrimal canaliculus SubClassOf integumentary system layer

Changes for: cerebellum vermis lobule X

Added
- + cerebellum vermis lobule X SubClassOf contributes to morphology of some flocculonodular lobe

Changes for: genital labium

Added
- + genital labium SubClassOf contributes to morphology of some external female genitalia

Changes for: cerebellum vermis lobule VII

Added
- + cerebellum vermis lobule VII SubClassOf contributes to morphology of some cerebellum posterior vermis

Changes for: cerebellum vermis lobule VIII

Added
- + cerebellum vermis lobule VIII SubClassOf contributes to morphology of some cerebellum posterior vermis

Changes for: mucosa of palate

Added
- + mucosa of palate SubClassOf endoderm-derived structure

Changes for: mucosa of nasal septum

Deleted
- - mucosa of nasal septum SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
- - mucosa of nasal septum SubClassOf nasal cavity mucosa
Added
- + mucosa of nasal septum SubClassOf mesoderm-derived structure
- + mucosa of nasal septum SubClassOf respiratory system mucosa

Changes for: mucosa of lacrimal sac

Added
- + mucosa of lacrimal sac SubClassOf integumentary system layer

Changes for: midface

Added
- + midface SubClassOf contributes to morphology of some face

Changes for: cerebellum vermis lobule

Added
- + cerebellum vermis lobule SubClassOf contributes to morphology of some cerebellar vermis

Changes for: cerebellum emboliform nucleus

Deleted
- - cerebellum emboliform nucleus SubClassOf regional part of cerebellum
Added
- + cerebellum emboliform nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: cerebellum vermis lobule I

Added
- + cerebellum vermis lobule I SubClassOf contributes to morphology of some cerebellum anterior vermis

Changes for: cerebellum vermis lobule II

Added
- + cerebellum vermis lobule II SubClassOf contributes to morphology of some cerebellum anterior vermis
- + cerebellum vermis lobule II SubClassOf contributes to morphology of some cerebellum vermis lobule

Changes for: cerebellum vermis lobule III

Added
- + cerebellum vermis lobule III SubClassOf contributes to morphology of some cerebellum anterior vermis
- + cerebellum vermis lobule III SubClassOf contributes to morphology of some cerebellum vermis lobule

Changes for: cerebellum vermis lobule IV

Added
- + cerebellum vermis lobule IV SubClassOf contributes to morphology of some cerebellum anterior vermis
- + cerebellum vermis lobule IV SubClassOf contributes to morphology of some cerebellum vermis lobule

Changes for: cerebellum vermis lobule V

Added
- + cerebellum vermis lobule V SubClassOf contributes to morphology of some cerebellum anterior vermis
- + cerebellum vermis lobule V SubClassOf contributes to morphology of some cerebellum vermis lobule

Changes for: cerebellum vermis lobule VI

Added
- + cerebellum vermis lobule VI SubClassOf contributes to morphology of some cerebellum posterior vermis

Changes for: interhyal element

Added
- + interhyal element SubClassOf endoderm-derived structure

Changes for: spinal cord alar plate

Added
- + spinal cord alar plate SubClassOf contributes to morphology of some neural tube mantle layer

Changes for: neural tube basal plate

Added
- + neural tube basal plate SubClassOf contributes to morphology of some neural tube mantle layer

Changes for: hypobranchial element

Added
- + hypobranchial element SubClassOf endoderm-derived structure

Changes for: accessory olfactory bulb

Added
- + accessory olfactory bulb SubClassOf contributes to morphology of some olfactory lobe

Changes for: ceratobranchial element

Added
- + ceratobranchial element SubClassOf endoderm-derived structure

Changes for: external male genitalia

Added
- + external male genitalia SubClassOf contributes to morphology of some male reproductive system

Changes for: internal male genitalia

Added
- + internal male genitalia SubClassOf contributes to morphology of some male reproductive system

Changes for: primitive pit

Deleted
- - primitive pit SubClassOf embryonic structure
Added
- + primitive pit SubClassOf contributes to morphology of some primitive streak
- + primitive pit SubClassOf develops in some primitive knot
- + primitive pit SubClassOf located in some notochordal process
- + primitive pit SubClassOf pit

Changes for: primitive groove

Added
- + primitive groove SubClassOf contributes to morphology of some primitive streak

Changes for: crus of ear

Added
- + crus of ear SubClassOf develops from some auditory hillocks, pharyngeal arch 1 derived
- + crus of ear SubClassOf endoderm-derived structure
- + crus of ear SubClassOf structure with developmental contribution from neural crest

Changes for: pharyngeal pouch

Deleted
- - pharyngeal pouch SubClassOf endo-epithelium
- - pharyngeal pouch SubClassOf unilaminar epithelium
- - pharyngeal pouch definition embryonic structure that forms on the endodermal side between the pharyngeal arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. The pouches line up with the clefts, and these thin segments become gills in fish[WP]. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]. { database cross reference=http://en.wikipedia.org/wiki/Pharyngeal_pouch_(embryology) }
Added
- + pharyngeal pouch SubClassOf endoderm of foregut
- + pharyngeal pouch SubClassOf upper respiratory tract epithelium
- + pharyngeal pouch definition An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23020903 , database cross reference=UBERON:cjm , database cross reference=ZFA:0001106 }

Changes for: myocardial compact layer

Added
- + myocardial compact layer SubClassOf contributes to morphology of some myocardium

Changes for: pharyngeal pouch 1

Added
- + pharyngeal pouch 1 database cross reference EMAPA:16125

Changes for: basisphenoid bone

Added
- + basisphenoid bone SubClassOf contributes to morphology of some sphenoid bone

Changes for: orbital gyrus

Deleted
- - orbital gyrus SubClassOf frontal gyrus
- - orbital gyrus SubClassOf part of some frontal cortex
Added
- + orbital gyrus SubClassOf gyrus
- + orbital gyrus SubClassOf part of some frontal lobe

Changes for: hadjikhani et al. (1998) visuotopic area v2d

Deleted
- - hadjikhani et al. (1998) visuotopic area v2d SubClassOf cerebral cortex lobe
Added
- + hadjikhani et al. (1998) visuotopic area v2d SubClassOf regional part of brain

Changes for: branchiostegal ray

Added
- + branchiostegal ray SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: external acoustic meatus osseus part

Added
- + external acoustic meatus osseus part SubClassOf endoderm-derived structure

Changes for: urohyal

Added
- + urohyal SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: rostral middle frontal gyrus

Deleted
- - rostral middle frontal gyrus SubClassOf cerebral cortex lobe
Added
- + rostral middle frontal gyrus SubClassOf frontal gyrus
- + rostral middle frontal gyrus SubClassOf regional part of cerebral cortex

Changes for: caudal middle frontal gyrus

Deleted
- - caudal middle frontal gyrus SubClassOf cerebral cortex lobe
Added
- + caudal middle frontal gyrus SubClassOf frontal gyrus

Changes for: os clitoris

Added
- + os clitoris SubClassOf contributes to morphology of some clitoris
- + os clitoris SubClassOf contributes to morphology of some skeletal system

Changes for: loop of Henle ascending limb thin segment

Added
- + loop of Henle ascending limb thin segment SubClassOf contributes to morphology of some ascending limb of loop of Henle

Changes for: premaxilla ascending process

Deleted
- - premaxilla ascending process SubClassOf mesoderm-derived structure
Added
- + premaxilla ascending process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: anterior dorsomedial process of autopalatine

Added
- + anterior dorsomedial process of autopalatine SubClassOf endoderm-derived structure

Changes for: cerebellar layer

Deleted
- - cerebellar layer SubClassOf brain grey matter
- - cerebellar layer definition The cortical cell layer of the cerebellum. It consists of the granular layer, molecular layer, and Purkinje cell layer. { database cross reference=ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum }
- - cerebellar layer has exact synonym cytoarchitectural part of the cerebellar cortex { database cross reference=NIF_GrossAnatomy:birnlex_880 , has synonym type=preferred term when talking about an instance of this class in Homo sapiens }
Added
- + cerebellar layer EquivalentTo central nervous system gray matter layer and part of some cerebellum
- + cerebellar layer SubClassOf central nervous system gray matter layer
- + cerebellar layer SubClassOf contributes to morphology of some cerebellar cortex
- + cerebellar layer SubClassOf part of some cerebellum
- + cerebellar layer EXACT PREFERRED cytoarchitectural part of the cerebellar cortex { database cross reference=NIF_GrossAnatomy:birnlex_880 }
- + cerebellar layer definition A cortical cell layer of the cerebellum. One of: the granular layer, molecular layer, and Purkinje cell layer. { database cross reference=ncithesaurus:Cortical_Cell_Layer_of_the_Cerebellum }

Changes for: salivatory nucleus

Deleted
- - salivatory nucleus SubClassOf regional part of metencephalon
Added
- + salivatory nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: branchiomeric muscle

Deleted
- - branchiomeric muscle SubClassOf mesoderm-derived structure
Added
- + branchiomeric muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: orbitofrontal cortex

Added
- + orbitofrontal cortex SubClassOf contributes to morphology of some cerebral cortex
- + orbitofrontal cortex SubClassOf contributes to morphology of some frontal cortex

Changes for: lymphatic vessel smooth muscle

Added
- + lymphatic vessel smooth muscle SubClassOf contributes to morphology of some lymphatic vessel

Changes for: glomerular capillary

Added
- + glomerular capillary SubClassOf contributes to morphology of some renal glomerulus

Changes for: intestine smooth muscle

Added
- + intestine smooth muscle SubClassOf contributes to morphology of some intestine

Changes for: kidney pelvis smooth muscle

Added
- + kidney pelvis smooth muscle SubClassOf contributes to morphology of some renal pelvis

Changes for: cardiac septum

Added
- + cardiac septum SubClassOf contributes to morphology of some heart

Changes for: mentalis

Deleted
- - mentalis SubClassOf ectoderm-derived structure
Added
- + mentalis SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure
- + mentalis SubClassOf skin muscle

Changes for: appendicular skeleton

Added
- + appendicular skeleton SubClassOf contributes to morphology of some skeletal system

Changes for: kidney pyramid

Added
- + kidney pyramid SubClassOf contributes to morphology of some renal medulla

Changes for: kidney outer medulla outer stripe

Added
- + kidney outer medulla outer stripe SubClassOf contributes to morphology of some outer medulla of kidney

Changes for: kidney outer medulla inner stripe

Added
- + kidney outer medulla inner stripe SubClassOf contributes to morphology of some outer medulla of kidney

Changes for: maxilla ascending process

Deleted
- - maxilla ascending process SubClassOf mesoderm-derived structure
Added
- + maxilla ascending process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pharyngobranchial 2 bone uncinate process

Added
- + pharyngobranchial 2 bone uncinate process SubClassOf endoderm-derived structure

Changes for: cardiac ventricle

Added
- + cardiac ventricle SubClassOf contributes to morphology of some heart

Changes for: cardiac atrium

Added
- + cardiac atrium SubClassOf contributes to morphology of some heart

Changes for: quadrate posterodorsal process

Added
- + quadrate posterodorsal process SubClassOf endoderm-derived structure

Changes for: quadrate dorsal process

Added
- + quadrate dorsal process SubClassOf endoderm-derived structure

Changes for: inferior reticular formation

Deleted
- - inferior reticular formation SubClassOf regional part of medullary reticular formation

Changes for: chin ventral margin

Added
- + chin ventral margin SubClassOf endoderm-derived structure

Changes for: nasal muscle

Deleted
- - nasal muscle SubClassOf ectoderm-derived structure
Added
- + nasal muscle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: cymba conchae of pinna

Added
- + cymba conchae of pinna SubClassOf endoderm-derived structure
- + cymba conchae of pinna SubClassOf structure with developmental contribution from neural crest

Changes for: perihilar interstitium

Added
- + perihilar interstitium SubClassOf contributes to morphology of some kidney interstitium

Changes for: ureteric bud tip

Added
- + ureteric bud tip SubClassOf contributes to morphology of some ureteric bud

Changes for: intermolar eminence

Added
- + intermolar eminence SubClassOf endoderm-derived structure

Changes for: superior reticular formation medial column

Deleted
- - superior reticular formation medial column SubClassOf regional part of medullary reticular formation

Changes for: molar enamel organ

Added
- + molar enamel organ SubClassOf endoderm-derived structure

Changes for: nasal capsule

Added
- + nasal capsule SubClassOf contributes to morphology of some olfactory apparatus

Changes for: dermis

Deleted
- - dermis SubClassOf organ component layer
- - dermis SubClassOf part of some integument
Added
- + dermis SubClassOf integumentary system layer

Changes for: zona glomerulosa of adrenal gland

Added
- + zona glomerulosa of adrenal gland SubClassOf contributes to morphology of some adrenal cortex

Changes for: epithelium of bronchiole

Added
- + epithelium of bronchiole SubClassOf contributes to morphology of some bronchiole

Changes for: submandibular ganglion

Added
- + submandibular ganglion SubClassOf endoderm-derived structure

Changes for: zona fasciculata of adrenal gland

Added
- + zona fasciculata of adrenal gland SubClassOf contributes to morphology of some adrenal cortex

Changes for: zona reticularis of adrenal gland

Added
- + zona reticularis of adrenal gland SubClassOf contributes to morphology of some adrenal cortex

Changes for: upper pharyngeal tooth plate

Added
- + upper pharyngeal tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: upper pharyngeal tooth

Added
- + upper pharyngeal tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pharyngobranchial 3 tooth

Added
- + pharyngobranchial 3 tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: upper pharyngeal 4 tooth plate

Added
- + upper pharyngeal 4 tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: upper pharyngeal 4 tooth

Added
- + upper pharyngeal 4 tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pharyngobranchial 2 tooth

Added
- + pharyngobranchial 2 tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: lymphatic vessel endothelium

Added
- + lymphatic vessel endothelium SubClassOf contributes to morphology of some lymphatic vessel

Changes for: pontine raphe nucleus

Deleted
- - pontine raphe nucleus SubClassOf regional part of metencephalon
Added
- + pontine raphe nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: lung

Added
- + lung SubClassOf contributes to morphology of some respiratory system

Changes for: basihyal tooth plate

Added
- + basihyal tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: basihyal tooth

Added
- + basihyal tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: glomerular capillary endothelium

Added
- + glomerular capillary endothelium SubClassOf contributes to morphology of some glomerular capillary

Changes for: epithelium of bronchus

Added
- + epithelium of bronchus SubClassOf contributes to morphology of some bronchus

Changes for: suprachiasmatic nucleus

Added
- + suprachiasmatic nucleus SubClassOf contributes to morphology of some hypothalamus

Changes for: areola

Added
- + areola SubClassOf contributes to morphology of some mammary gland

Changes for: substantia nigra

Added
- + substantia nigra SubClassOf contributes to morphology of some collection of basal ganglia
- + substantia nigra SubClassOf contributes to morphology of some midbrain

Changes for: cerebellum

Added
- + cerebellum SubClassOf contributes to morphology of some metencephalon

Changes for: epithelium of gall bladder

Added
- + epithelium of gall bladder SubClassOf contributes to morphology of some gallbladder

Changes for: skeleton

Added
- + skeleton EquivalentTo anatomical cluster and has member some skeletal element
- + skeleton SubClassOf has member some skeletal element

Changes for: hindbrain

Added
- + hindbrain SubClassOf contributes to morphology of some brain

Changes for: occipital lobe

Deleted
- - occipital lobe SubClassOf anatomical cluster
- - occipital lobe SubClassOf ectoderm-derived structure
- - occipital lobe SubClassOf part of some neocortex
- - occipital lobe SubClassOf structure with developmental contribution from neural crest
- - occipital lobe has exact synonym occipital cortex
Added
- + occipital lobe SubClassOf contributes to morphology of some telencephalon
- + occipital lobe SubClassOf lobe of cerebral hemisphere
- + occipital lobe has narrow synonym occipital cortex

Changes for: gray matter

Deleted
- - gray matter of neuraxis label gray matter of neuraxis
Added
- + gray matter has exact synonym gray matter of neuraxis { database cross reference=FMA:67242 }
- + gray matter has exact synonym grey matter of neuraxis
- + gray matter label gray matter

Changes for: basibranchial 2 tooth

Added
- + basibranchial 2 tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: basibranchial 2 tooth plate

Added
- + basibranchial 2 tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: accessory XI nerve

Deleted
- - accessory XI nerve has exact synonym nervus accessorius [xi] { database cross reference=FMA:6720 , database cross reference=FMA:TA , has synonym type=latin term }
Added
- + accessory XI nerve dubious for taxon http://purl.obolibrary.org/obo/NCBITaxon_8292 { seeAlso=http://code.google.com/p/xenopus-anatomy-ontology/issues/detail?id=7 , source=VHOG , source=Wikipedia }
- + accessory XI nerve external definition A small motor nerve which emerges from the lateral wall of the medulla with the roots of the vagus nerve, and innervates a single pectoral suspensory muscle, the m.cucullaris. { source=ISBN:080184780X , source=XAO:0004214 }
- + accessory XI nerve has exact synonym nervus accessorius [XI] { database cross reference=FMA:6720 , database cross reference=FMA:TA , has synonym type=latin term }

Changes for: eye muscle

Added
- + eye muscle SubClassOf contributes to morphology of some camera-type eye

Changes for: kidney capsule

Added
- + kidney capsule SubClassOf contributes to morphology of some kidney

Changes for: basibranchial 4 tooth plate

Added
- + basibranchial 4 tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: basibranchial 4 tooth

Added
- + basibranchial 4 tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: basibranchial tooth

Added
- + basibranchial tooth SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: basibranchial tooth plate

Added
- + basibranchial tooth plate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: enteric nervous system

Added
- + enteric nervous system SubClassOf contributes to morphology of some autonomic nervous system

Changes for: trabecular network of bone

Added
- + trabecular network of bone SubClassOf contributes to morphology of some trabecular bone tissue

Changes for: enamel knot

Added
- + enamel knot SubClassOf contributes to morphology of some tooth enamel organ
- + enamel knot SubClassOf endoderm-derived structure

Changes for: thoracic rib cage

Added
- + thoracic rib cage SubClassOf contributes to morphology of some axial skeleton plus cranial skeleton

Changes for: stomach smooth muscle outer longitudinal layer

Added
- + stomach smooth muscle outer longitudinal layer SubClassOf contributes to morphology of some stomach muscularis externa

Changes for: pyloric gastric gland

Added
- + pyloric gastric gland SubClassOf contributes to morphology of some pylorus

Changes for: stomach smooth muscle inner oblique layer

Added
- + stomach smooth muscle inner oblique layer SubClassOf contributes to morphology of some stomach muscularis externa

Changes for: endoderm of foregut

Deleted
- - endoderm of foregut EquivalentTo endoderm and part of some foregut
- - endoderm of foregut SubClassOf endoderm
- - endoderm of foregut database cross reference EHDAA2:0000566
Added
- + endoderm of foregut EquivalentTo unilaminar epithelium and part of some foregut and develops from some endoderm
- + endoderm of foregut SubClassOf develops from some endoderm
- + endoderm of foregut SubClassOf endo-epithelium
- + endoderm of foregut SubClassOf foregut epithelium
- + endoderm of foregut SubClassOf unilaminar epithelium
- + endoderm of foregut database cross reference EHDAA2:0004568

Changes for: endoderm of midgut

Deleted
- - endoderm of midgut EquivalentTo endoderm and part of some midgut
- - endoderm of midgut SubClassOf endoderm
Added
- + endoderm of midgut EquivalentTo unilaminar epithelium and part of some midgut and develops from some endoderm
- + endoderm of midgut SubClassOf develops from some endoderm
- + endoderm of midgut SubClassOf endo-epithelium
- + endoderm of midgut SubClassOf epithelium of midgut
- + endoderm of midgut SubClassOf unilaminar epithelium

Changes for: stomach muscularis externa

Added
- + stomach muscularis externa SubClassOf contributes to morphology of some smooth muscle tissue
- + stomach muscularis externa SubClassOf contributes to morphology of some wall of stomach

Changes for: stomach smooth muscle circular layer

Added
- + stomach smooth muscle circular layer SubClassOf contributes to morphology of some stomach muscularis externa

Changes for: pyloric canal

Added
- + pyloric canal SubClassOf contributes to morphology of some pylorus

Changes for: cardiac gastric gland

Added
- + cardiac gastric gland SubClassOf contributes to morphology of some cardia of stomach

Changes for: epithelium of mammary gland

Added
- + epithelium of mammary gland SubClassOf contributes to morphology of some mammary gland

Changes for: skeletal muscle tissue of tongue

Deleted
- - skeletal muscle tissue of tongue SubClassOf ectoderm-derived structure
Added
- + skeletal muscle tissue of tongue SubClassOf contributes to morphology of some musculature
- + skeletal muscle tissue of tongue SubClassOf contributes to morphology of some tongue
- + skeletal muscle tissue of tongue SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: skeleton of lower jaw

Added
- + skeleton of lower jaw SubClassOf endoderm-derived structure

Changes for: spinal cord commissure

Added
- + spinal cord commissure SubClassOf contributes to morphology of some spinal cord

Changes for: hypodermis skeletal muscle layer

Added
- + hypodermis skeletal muscle layer SubClassOf contributes to morphology of some hypodermis
- + hypodermis skeletal muscle layer SubClassOf contributes to morphology of some musculature

Changes for: endoderm of hindgut

Deleted
- - endoderm of hindgut EquivalentTo endoderm and part of some hindgut
- - endoderm of hindgut SubClassOf endoderm
Added
- + endoderm of hindgut EquivalentTo unilaminar epithelium and part of some hindgut and develops from some endoderm
- + endoderm of hindgut SubClassOf develops from some endoderm
- + endoderm of hindgut SubClassOf endo-epithelium
- + endoderm of hindgut SubClassOf epithelium of hindgut
- + endoderm of hindgut SubClassOf unilaminar epithelium

Changes for: epidermal-dermal junction

Added
- + epidermal-dermal junction SubClassOf contributes to morphology of some zone of skin

Changes for: ligament of pinna

Added
- + ligament of pinna SubClassOf structure with developmental contribution from neural crest

Changes for: tooth of lower jaw

Added
- + tooth of lower jaw SubClassOf endoderm-derived structure

Changes for: pulmonary alveolar parenchyma

Added
- + pulmonary alveolar parenchyma SubClassOf contributes to morphology of some alveolar system

Changes for: mammary gland alveolus

Added
- + mammary gland alveolus SubClassOf contributes to morphology of some lobule of lactiferous gland

Changes for: hard palate

Added
- + hard palate SubClassOf endoderm-derived structure

Changes for: splanchnocranium

Added
- + splanchnocranium SubClassOf endoderm-derived structure
- + splanchnocranium has exact synonym pharyngeal endoskeleton { database cross reference=UBERON:cjm }

Changes for: epithelium of lower jaw

Added
- + epithelium of lower jaw SubClassOf endo-epithelium

Changes for: taenia tectum of brain

Deleted
- - taenia tectum of brain SubClassOf cerebral hemisphere white matter
- - taenia tectum of brain SubClassOf stria of neuraxis
Added
- + taenia tectum of brain SubClassOf stria of telencephalon
- + taenia tectum of brain SubClassOf white matter of limbic lobe

Changes for: vault of skull

Added
- + vault of skull SubClassOf contributes to morphology of some cranium

Changes for: pallium

Deleted
- - pallium SubClassOf gray matter of telencephalon
Added
- + pallium SubClassOf regional part of telencephalon

Changes for: aortic arch

Added
- + aortic arch SubClassOf contributes to morphology of some pharyngeal arch

Changes for: pharyngeal arch 1

Deleted
- - pharyngeal arch 1 definition First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove. { database cross reference=http://en.wikipedia.org/wiki/First_pharyngeal_arch }
Added
- + pharyngeal arch 1 definition The first pharyngeal arch is the most anteriorly positioned arch and forms the jaw. It is located between the stomodeum and the first pharyngeal groove. The neural crest cells that contribute to pharyngeal arch 1 arise from the caudal midbrain and rhombomeres 1 and 2 of the hindbrain. { database cross reference=http://en.wikipedia.org/wiki/First_pharyngeal_arch }

Changes for: female inguinal canal

Added
- + female inguinal canal SubClassOf contributes to morphology of some female reproductive system

Changes for: induseum griseum

Deleted
- - induseum griseum SubClassOf cerebral hemisphere white matter
- - induseum griseum SubClassOf stria of neuraxis
Added
- + induseum griseum SubClassOf stria of telencephalon
- + induseum griseum SubClassOf white matter of limbic lobe

Changes for: sublingual dorsal and ventral fused

Added
- + sublingual dorsal and ventral fused SubClassOf endoderm-derived structure

Changes for: lobe of lung

Added
- + lobe of lung SubClassOf contributes to morphology of some lung

Changes for: lung epithelium

Added
- + lung epithelium SubClassOf contributes to morphology of some lung

Changes for: lung connective tissue

Added
- + lung connective tissue SubClassOf contributes to morphology of some lung

Changes for: facial nucleus

Deleted
- - facial nucleus SubClassOf regional part of metencephalon
Added
- + facial nucleus SubClassOf contributes to morphology of some pons
- + facial nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: neural nucleus

Deleted
- - neural nucleus SubClassOf ectoderm-derived structure
- - neural nucleus SubClassOf regional part of nervous system
Added
- + neural nucleus SubClassOf central nervous system cell part cluster
- + neural nucleus SubClassOf composed primarily of some gray matter

Changes for: tract of brain

Added
- + tract of brain SubClassOf part of some white matter

Changes for: theca interna

Added
- + theca interna SubClassOf contributes to morphology of some theca cell layer

Changes for: superior cerebellar peduncle of pons

Deleted
- - superior cerebellar peduncle of pons SubClassOf regional part of cerebellar white matter

Changes for: superior cerebellar peduncle of midbrain

Deleted
- - superior cerebellar peduncle of midbrain SubClassOf regional part of cerebellar white matter

Changes for: oral cavity

Added
- + oral cavity SubClassOf contributes to morphology of some mouth

Changes for: primitive urogenital sinus

Added
- + primitive urogenital sinus SubClassOf contributes to morphology of some embryonic cloaca

Changes for: cloaca

Added
- + cloaca database cross reference ZFA:0005781

Changes for: intestine

Added
- + intestine SubClassOf contributes to morphology of some digestive system

Changes for: sagittal sinus

Added
- + sagittal sinus database cross reference http://en.wikipedia.org/wiki/Sagittal_sinus
- + sagittal sinus definition Either the inferior or superior sagittal sinus { database cross reference=http://en.wikipedia.org/wiki/Sagittal_sinus }

Changes for: epibranchial bone uncinate process

Added
- + epibranchial bone uncinate process SubClassOf endoderm-derived structure

Changes for: prostate gland dorsolateral lobe

Added
- + prostate gland dorsolateral lobe SubClassOf contributes to morphology of some prostate gland

Changes for: coagulating gland

Added
- + coagulating gland SubClassOf contributes to morphology of some prostate gland

Changes for: pharyngeal slit

Deleted
- - pharyngeal slit SubClassOf organ
- - pharyngeal slit definition filter-feeding organs found in non-vertebrate chordates (lancelets and tunicates) and hemichordates living in aquatic environments. These repeated segments are controlled by similar developmental mechanisms. { database cross reference=http://en.wikipedia.org/wiki/Pharyngeal_slit }
Added
- + pharyngeal slit SubClassOf digestive system organ
- + pharyngeal slit SubClassOf endoderm-derived structure
- + pharyngeal slit SubClassOf part of some chordate pharynx
- + pharyngeal slit definition An organ formed from the perforation between the point of contact between ectoderm and endoderm in the pharynx. The slits assist in filtering food particles from the water. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23020903 , database cross reference=UBERON:cjm }

Changes for: pharyngeal arch system

Deleted
- - pharyngeal system definition A transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear. { database cross reference=GO:0060037 , database cross reference=GOC:dph }
- - pharyngeal system label pharyngeal system
Added
- + pharyngeal arch system SubClassOf anatomical cluster
- + pharyngeal arch system SubClassOf endoderm-derived structure
- + pharyngeal arch system SubClassOf part of some embryo
- + pharyngeal arch system SubClassOf part of some pharyngeal region of foregut
- + pharyngeal arch system definition A transient embryonic complex that comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming, which may include (depending on species) the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear[GO,modified]. { database cross reference=GO:0060037 , database cross reference=GOC:dph }
- + pharyngeal arch system has exact synonym pharyngeal system { database cross reference=GO:0060037 }
- + pharyngeal arch system label pharyngeal arch system

Changes for: mesentery of stomach

Added
- + mesentery of stomach SubClassOf contributes to morphology of some stomach

Changes for: forestomach

Added
- + forestomach SubClassOf contributes to morphology of some stomach

Changes for: presphenoid bone

Added
- + presphenoid bone SubClassOf contributes to morphology of some sphenoid bone

Changes for: roof plate of midbrain

Added
- + roof plate of midbrain SubClassOf contributes to morphology of some midbrain

Changes for: metapodial pad

Added
- + metapodial pad SubClassOf contributes to morphology of some autopod region

Changes for: transitional epithelium of prostatic urethra

Added
- + transitional epithelium of prostatic urethra SubClassOf epithelium of male urethra

Changes for: smooth muscle of trachea

Added
- + smooth muscle of trachea SubClassOf contributes to morphology of some trachea

Changes for: smooth muscle of eye

Added
- + smooth muscle of eye SubClassOf contributes to morphology of some musculature

Changes for: epithelium of hard palate

Added
- + epithelium of hard palate SubClassOf endo-epithelium

Changes for: epithelium of tongue

Added
- + epithelium of tongue SubClassOf contributes to morphology of some tongue
- + epithelium of tongue SubClassOf endo-epithelium

Changes for: epithelium of soft palate

Added
- + epithelium of soft palate SubClassOf endo-epithelium

Changes for: transverse palatine fold

Added
- + transverse palatine fold SubClassOf endoderm-derived structure

Changes for: mesenchyme of pinna

Added
- + mesenchyme of pinna SubClassOf structure with developmental contribution from neural crest

Changes for: mesenchyme of upper jaw

Added
- + mesenchyme of upper jaw SubClassOf endoderm-derived structure

Changes for: mesenchyme of lower jaw

Added
- + mesenchyme of lower jaw SubClassOf endoderm-derived structure

Changes for: cerebral artery

Added
- + cerebral artery database cross reference BTO:0005205

Changes for: early pharyngeal endoderm

Deleted
- - early pharyngeal endoderm SubClassOf endoderm-derived structure
- - early pharyngeal endoderm SubClassOf endoderm
Added
- + early pharyngeal endoderm SubClassOf embryonic tissue
- + early pharyngeal endoderm SubClassOf endoderm of foregut
- + early pharyngeal endoderm SubClassOf upper respiratory tract epithelium

Changes for: tract of spinal cord

Added
- + tract of spinal cord SubClassOf part of some white matter

Changes for: thyroid diverticulum

Deleted
- - thyroid diverticulum has related synonym saccus thyroideus; diverticulum thyroideum { database cross reference=http://en.wikipedia.org/wiki/Thyroid_diverticulum , has synonym type=latin term }
Added
- + thyroid diverticulum SubClassOf part of some chordate pharynx
- + thyroid diverticulum has related synonym diverticulum thyroideum { database cross reference=http://en.wikipedia.org/wiki/Thyroid_diverticulum , has synonym type=latin term }
- + thyroid diverticulum has related synonym saccus thyroideus { database cross reference=http://en.wikipedia.org/wiki/Thyroid_diverticulum , has synonym type=latin term }

Changes for: tongue musculature

Added
- + tongue musculature SubClassOf endoderm-derived structure

Changes for: tendon sheath

Added
- + tendon sheath EquivalentTo organ component layer and bounding layer of some tendon

Changes for: esophageal sphincter

Deleted
- - esophageal sphincter database cross reference TAO:0000415
- - esophageal sphincter database cross reference ZFA:0000415
- - esophageal sphincter definition A sphincter muscle that is part of an esophagus. { database cross reference=OBOL:accepted }
- - esophageal sphincter has exact synonym oesophagial sphincter { database cross reference=ZFA:0000415 }
Added
- + esophageal sphincter definition A sphincter that is part of an esophagus.

Changes for: hippocampus stratum lacunosum moleculare

Added
- + hippocampus stratum lacunosum moleculare EquivalentTo layer of hippocampus and in deep part of some Ammon’s horn
- + hippocampus stratum lacunosum moleculare SubClassOf in deep part of some Ammon’s horn

Changes for: nucleus of medulla oblongata

Deleted
- - nucleus of medulla oblongata SubClassOf regional part of medulla oblongata
Added
- + nucleus of medulla oblongata SubClassOf structure with developmental contribution from neural crest

Changes for: hippocampus stratum lucidum

Deleted
- - hippocampus stratum lucidum definition A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000). { database cross reference=http://en.wikipedia.org/wiki/Stratum_lucidum_of_hippocampus , database cross reference=nif_annot:NeuroNames_defSource }
Added
- + hippocampus stratum lucidum EquivalentTo layer of hippocampus and immediately deep to some hippocampus pyramidal layer and immediately superficial to some hippocampus stratum radiatum
- + hippocampus stratum lucidum SubClassOf immediately deep to some hippocampus pyramidal layer
- + hippocampus stratum lucidum SubClassOf immediately superficial to some hippocampus stratum radiatum
- + hippocampus stratum lucidum definition A cytoarchitectural term denoting the layer of the CA3 field of the hippocampus that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000). { database cross reference=http://en.wikipedia.org/wiki/Stratum_lucidum_of_hippocampus , database cross reference=nif_annot:NeuroNames_defSource }

Changes for: Barrington’s nucleus

Deleted
- - Barrington’s nucleus SubClassOf regional part of metencephalon
Added
- + Barrington’s nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: parabrachial nucleus

Deleted
- - parabrachial nucleus SubClassOf regional part of metencephalon
Added
- + parabrachial nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: hippocampus alveus

Deleted
- - hippocampus alveus SubClassOf layer of hippocampus
Added
- + hippocampus alveus SubClassOf central nervous system white matter layer
- + hippocampus alveus SubClassOf continuous with some hippocampus fimbria
- + hippocampus alveus SubClassOf part of some hippocampal formation
- + hippocampus alveus SubClassOf structure with developmental contribution from neural crest

Changes for: tetrapod parietal bone

Added
- + tetrapod parietal bone SubClassOf contributes to morphology of some vault of skull

Changes for: prostate gland ventral lobe

Added
- + prostate gland ventral lobe SubClassOf contributes to morphology of some prostate gland

Changes for: hilum of kidney

Deleted
- - hilum of kidney SubClassOf urinary system structure

Changes for: sublingual dorsal ossification

Added
- + sublingual dorsal ossification SubClassOf endoderm-derived structure

Changes for: sublingual ventral ossification

Added
- + sublingual ventral ossification SubClassOf endoderm-derived structure

Changes for: skeletal muscle tissue of masseter

Added
- + skeletal muscle tissue of masseter SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: skeletal muscle tissue of temporalis

Added
- + skeletal muscle tissue of temporalis SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: skeletal muscle tissue of mylohyoid

Added
- + skeletal muscle tissue of mylohyoid SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: skeletal muscle tissue of orbicularis oculi

Added
- + skeletal muscle tissue of orbicularis oculi SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: skeletal muscle tissue of digastric

Added
- + skeletal muscle tissue of digastric SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: alveolar ridge of mandible

Deleted
- - alveolar ridge of mandible SubClassOf mesoderm-derived structure
Added
- + alveolar ridge of mandible SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: alveolar process of maxilla

Deleted
- - alveolar process of maxilla SubClassOf mesoderm-derived structure
Added
- + alveolar process of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: lateral pes lemniscus

Deleted
- - lateral pes lemniscus SubClassOf brainstem white matter
Added
- + lateral pes lemniscus SubClassOf lemniscus

Changes for: flocculonodular lobe

Added
- + flocculonodular lobe SubClassOf contributes to morphology of some cerebellar cortex

Changes for: postcommissural fornix of brain

Deleted
- - postcommissural fornix has related synonym postcommissural fornix { database cross reference=NeuroNames:431 }
- - postcommissural fornix label postcommissural fornix
Added
- + postcommissural fornix of brain has exact synonym postcommissural fornix { database cross reference=FMA:62062 }
- + postcommissural fornix of brain label postcommissural fornix of brain

Changes for: dorsal longitudinal fasciculus of hypothalamus

Deleted
- - dorsal longitudinal fasciculus of hypothalamus SubClassOf diencephalic white matter

Changes for: dorsal tegmental decussation

Deleted
- - dorsal tegmental decussation SubClassOf brainstem white matter
Added
- + dorsal tegmental decussation SubClassOf decussation of neuraxis

Changes for: medial lemniscus

Deleted
- - medial lemniscus SubClassOf brain white matter
Added
- + medial lemniscus has related synonym Reil’s band { database cross reference=http://en.wikipedia.org/wiki/Medial_lemniscus }
- + medial lemniscus has related synonym Reil’s ribbon { database cross reference=http://en.wikipedia.org/wiki/Medial_lemniscus }

Changes for: lemniscus

Deleted
- - lemniscus SubClassOf regional part of brain
Added
- + lemniscus SubClassOf central nervous system cell part cluster
- + lemniscus SubClassOf neuron projection bundle
- + lemniscus SubClassOf part of some white matter
- + lemniscus database cross reference FMA:83676

Changes for: anterior commissure anterior part

Added
- + anterior commissure anterior part SubClassOf contributes to morphology of some anterior commissure

Changes for: regional part of cerebellar white matter

Deleted
- - regional part of cerebellar white matter EquivalentTo multi-tissue structure and part of some white matter of cerebellum
- - regional part of cerebellar white matter SubClassOf ectoderm-derived structure
- - regional part of cerebellar white matter SubClassOf part of some white matter of cerebellum
- - regional part of cerebellar white matter SubClassOf regional part of nervous system
- - regional part of cerebellar white matter database cross reference FMA:72547
- - regional part of cerebellar white matter database cross reference NIF_GrossAnatomy:birnlex_959
- - regional part of cerebellar white matter definition A multi-tissue structure that is part of a white matter of cerebellum. { database cross reference=OBOL:automatic }
- - regional part of cerebellar white matter in subset non informative
Added
- + regional part of cerebellar white matter consider FMA:72547
- + regional part of cerebellar white matter consider NIF_GrossAnatomy:birnlex_959
- + regional part of cerebellar white matter deprecated true

Changes for: stria terminalis

Deleted
- - stria terminalis SubClassOf white matter
Added
- + stria terminalis SubClassOf cerebral hemisphere white matter
- + stria terminalis SubClassOf part of some cerebral hemisphere white matter
- + stria terminalis SubClassOf stria of telencephalon

Changes for: cingulate cortex

Deleted
- - cingulate cortex SubClassOf cerebral cortex lobe
Added
- + cingulate cortex SubClassOf ectoderm-derived structure
- + cingulate cortex SubClassOf organ part
- + cingulate cortex SubClassOf part of some limbic lobe
- + cingulate cortex SubClassOf structure with developmental contribution from neural crest

Changes for: brachium of inferior colliculus

Deleted
- - brachium of inferior colliculus SubClassOf brain white matter
Added
- + brachium of inferior colliculus SubClassOf central nervous system cell part cluster
- + brachium of inferior colliculus SubClassOf neuron projection bundle
- + brachium of inferior colliculus SubClassOf part of some white matter

Changes for: lobe parts of cerebral cortex

Deleted
- - cerebral cortex lobe SubClassOf part of some cerebral cortex
- - cerebral cortex lobe SubClassOf regional part of cerebral cortex
- - cerebral cortex lobe comment check w.r.t regional part of cerebreal cortex
- - cerebral cortex lobe database cross reference FMA:68603
- - cerebral cortex lobe database cross reference NIF_GrossAnatomy:birnlex_922
- - cerebral cortex lobe has exact synonym lobe of cerebral cortex { database cross reference=NIF_GrossAnatomy:birnlex_922 }
- - cerebral cortex lobe has exact synonym lobe parts of cerebral cortex { database cross reference=NIF_GrossAnatomy:birnlex_922 }
- - cerebral cortex lobe has related synonym cerebral cortical segment { database cross reference=FMA:68603 }
- - cerebral cortex lobe has related synonym lobes of the brain { database cross reference=NIF_GrossAnatomy:birnlex_922 }
- - cerebral cortex lobe has related synonym regional organ part of cerebral cortex { database cross reference=FMA:68603 }
- - cerebral cortex lobe has related synonym segment of cerebral cortex { database cross reference=NIF_GrossAnatomy:birnlex_922 }
- - cerebral cortex lobe label cerebral cortex lobe
Added
- + lobe parts of cerebral cortex consider FMA:68603
- + lobe parts of cerebral cortex deprecated true
- + lobe parts of cerebral cortex label lobe parts of cerebral cortex

Changes for: epididymis epithelium

Added
- + epididymis epithelium SubClassOf contributes to morphology of some epididymis

Changes for: external capsule

Added
- + external capsule SubClassOf part of some cerebral hemisphere white matter

Changes for: gastroesophageal sphincter

Added
- + gastroesophageal sphincter SubClassOf contributes to morphology of some cardia of stomach

Changes for: fundus of urinary bladder

Added
- + fundus of urinary bladder SubClassOf contributes to morphology of some urinary bladder

Changes for: segment of white matter of spinal cord

Deleted
- - segment of white matter of spinal cord SubClassOf white matter of spinal cord
- - segment of white matter of spinal cord database cross reference FMA:258174
Added
- + segment of white matter of spinal cord consider FMA:258174
- + segment of white matter of spinal cord deprecated true

Changes for: subdivision of spinal cord dorsal column

Deleted
- - subdivision of spinal cord dorsal column SubClassOf segment of white matter of spinal cord
Added
- + subdivision of spinal cord dorsal column SubClassOf part of some white matter of spinal cord
- + subdivision of spinal cord dorsal column SubClassOf spinal cord column

Changes for: subdivision of spinal cord lateral column

Deleted
- - subdivision of spinal cord lateral column SubClassOf segment of white matter of spinal cord
Added
- + subdivision of spinal cord lateral column SubClassOf spinal cord column

Changes for: cuneus cortex

Deleted
- - cuneus cortex SubClassOf cerebral cortex lobe
- - cuneus cortex SubClassOf part of some neocortex
Added
- + cuneus cortex SubClassOf occipital gyrus

Changes for: precuneus cortex

Deleted
- - precuneus cortex SubClassOf cerebral cortex lobe
- - precuneus cortex SubClassOf part of some neocortex
Added
- + precuneus cortex SubClassOf gyrus

Changes for: inferior parietal cortex

Deleted
- - inferior parietal cortex SubClassOf cerebral cortex lobe
Added
- + inferior parietal cortex SubClassOf ectoderm-derived structure
- + inferior parietal cortex SubClassOf organ part
- + inferior parietal cortex SubClassOf structure with developmental contribution from neural crest

Changes for: internal arcuate fiber bundle

Deleted
- - internal arcuate fiber bundle SubClassOf part of some medulla oblongata
- - internal arcuate fiber bundle SubClassOf part of some white matter
Added
- + internal arcuate fiber bundle SubClassOf part of some white matter of medulla oblongata

Changes for: stria medullaris

Deleted
- - stria medullaris SubClassOf part of some white matter

Changes for: actinotrichium

Deleted
- - actinotrichium comment Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): “Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; G�raudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (G�raudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (G�raudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).”
Added
- + actinotrichium comment Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): ‘Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; G�raudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (G�raudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (G�raudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).’

Changes for: posterior transverse termporal area 42

Deleted
- - posterior transverse termporal area 42 SubClassOf cerebral cortex lobe

Changes for: anterior transverse termporal area 41

Deleted
- - anterior transverse termporal area 41 SubClassOf cerebral cortex lobe

Changes for: superior parietal cortex

Deleted
- - superior parietal cortex SubClassOf cerebral cortex lobe
Added
- + superior parietal cortex SubClassOf ectoderm-derived structure
- + superior parietal cortex SubClassOf organ part
- + superior parietal cortex SubClassOf structure with developmental contribution from neural crest

Changes for: body of corpus callosum

Deleted
- - body of corpus callosum SubClassOf regional part of telencephalon
Added
- + body of corpus callosum SubClassOf cerebral hemisphere white matter

Changes for: uncinate fasciculus

Deleted
- - uncinate fasciculus SubClassOf part of some white matter

Changes for: ventral acoustic stria

Deleted
- - ventral acoustic stria SubClassOf white matter
Added
- + ventral acoustic stria SubClassOf brainstem white matter
- + ventral acoustic stria SubClassOf part of some pontine tegmentum
- + ventral acoustic stria SubClassOf stria of neuraxis
- + ventral acoustic stria SubClassOf structure with developmental contribution from neural crest

Changes for: posterior part of anterior commissure

Added
- + posterior part of anterior commissure SubClassOf contributes to morphology of some anterior commissure

Changes for: hair follicle matrix region

Added
- + hair follicle matrix region SubClassOf contributes to morphology of some bulb of hair follicle

Changes for: primitive knot

Added
- + primitive knot SubClassOf contributes to morphology of some primitive streak

Changes for: thyroid primordium

Added
- + thyroid primordium SubClassOf part of some chordate pharynx

Changes for: sphenoid bone pterygoid process

Added
- + sphenoid bone pterygoid process SubClassOf contributes to morphology of some sphenoid bone

Changes for: aortic arch 2

Added
- + aortic arch 2 SubClassOf contributes to morphology of some pharyngeal arch 2

Changes for: aortic arch 1

Added
- + aortic arch 1 SubClassOf contributes to morphology of some pharyngeal arch 1

Changes for: liver lobule

Added
- + liver lobule SubClassOf contributes to morphology of some liver parenchyma

Changes for: urinary bladder urothelium

Added
- + urinary bladder urothelium SubClassOf contributes to morphology of some urinary bladder

Changes for: spleen capsule

Added
- + spleen capsule SubClassOf contributes to morphology of some spleen

Changes for: efferent arteriole

Added
- + efferent arteriole SubClassOf contributes to morphology of some renal corpuscle

Changes for: suspensorium

Added
- + suspensorium SubClassOf endoderm-derived structure

Changes for: afferent arteriole

Added
- + afferent arteriole SubClassOf contributes to morphology of some renal corpuscle

Changes for: surface structure

Deleted
- - surface structure EquivalentTo multi-tissue structure and part of some external covering of organism and adjacent to some space surrounding organism
- - surface structure SubClassOf multi-tissue structure
- - surface structure SubClassOf part of some external covering of organism
Added
- + surface structure EquivalentTo anatomical structure and part of some integumental system and adjacent to some space surrounding organism
- + surface structure SubClassOf anatomical structure
- + surface structure SubClassOf part of some integumental system

Changes for: nucleus of cerebellar nuclear complex

Deleted
- - nucleus of cerebellar nuclear complex SubClassOf regional part of cerebellum
Added
- + nucleus of cerebellar nuclear complex SubClassOf contributes to morphology of some cerebellum
- + nucleus of cerebellar nuclear complex SubClassOf structure with developmental contribution from neural crest

Changes for: vasculature of brain

Deleted
- - cerebrovascular system SubClassOf anatomical system
- - cerebrovascular system SubClassOf part of some vascular system
- - cerebrovascular system label cerebrovascular system
Added
- + vasculature of brain SubClassOf ectoderm-derived structure
- + vasculature of brain SubClassOf part of some brain
- + vasculature of brain SubClassOf vasculature of organ
- + vasculature of brain database cross reference EFO:0003491
- + vasculature of brain database cross reference FMA:242007
- + vasculature of brain database cross reference FMA:61935
- + vasculature of brain database cross reference TAO:0000099
- + vasculature of brain database cross reference ZFA:0000099
- + vasculature of brain has exact synonym brain vasculature
- + vasculature of brain has exact synonym cerebrovascular system { database cross reference=BTO:0003840 }
- + vasculature of brain has exact synonym intracerebral vasculature { database cross reference=FMA:61935 }
- + vasculature of brain in subset efo slim
- + vasculature of brain label vasculature of brain

Changes for: trachea

Added
- + trachea SubClassOf contributes to morphology of some respiratory system

Changes for: aortic arch 3

Added
- + aortic arch 3 SubClassOf contributes to morphology of some pharyngeal arch 3

Changes for: decussation of diencephalon

Deleted
- - decussation of diencephalon SubClassOf diencephalic white matter

Changes for: decussation of neuraxis

Deleted
- - decussation of neuraxis SubClassOf white matter
Added
- + decussation of neuraxis SubClassOf central nervous system cell part cluster
- + decussation of neuraxis SubClassOf neuron projection bundle
- + decussation of neuraxis SubClassOf part of some white matter

Changes for: cerebellar peduncle

Added
- + cerebellar peduncle SubClassOf contributes to morphology of some white matter of cerebellum

Changes for: nucleus of pontine reticular formation

Deleted
- - nucleus of pontine reticular formation SubClassOf regional part of metencephalon
Added
- + nucleus of pontine reticular formation SubClassOf structure with developmental contribution from neural crest

Changes for: nucleus of midbrain tegmentum

Deleted
- - nucleus of midbrain tegmentum SubClassOf regional part of midbrain tegmentum
Added
- + nucleus of midbrain tegmentum SubClassOf structure with developmental contribution from neural crest

Changes for: Peyer’s patch epithelium

Added
- + Peyer’s patch epithelium SubClassOf contributes to morphology of some Peyer’s patch

Changes for: parasubiculum

Deleted
- - parasubiculum SubClassOf regional part of cerebral cortex
Added
- + parasubiculum SubClassOf part of some hippocampal formation
- + parasubiculum SubClassOf regional part of telencephalon

Changes for: body of fornix

Deleted
- - body of fornix SubClassOf regional part of telencephalon
Added
- + body of fornix SubClassOf central nervous system cell part cluster
- + body of fornix SubClassOf structure with developmental contribution from neural crest

Changes for: vestibular system

Deleted
- - vestibular system comment note that FMA and NIF have no part information for this class. This is a GAT in FMA
Added
- + vestibular system SubClassOf part of some vestibulo-auditory system
- + vestibular system comment AO notes. FMA and NIF have no part information for this class. This is a GAT in FMA

Changes for: corona radiata of neuraxis

Deleted
- - corona radiata SubClassOf regional part of telencephalon
- - corona radiata SubClassOf white matter of telencephalon
- - corona radiata label corona radiata
Added
- + corona radiata of neuraxis SubClassOf cerebral hemisphere white matter
- + corona radiata of neuraxis label corona radiata of neuraxis

Changes for: dentate gyrus molecular layer

Deleted
- - dentate gyrus molecular layer SubClassOf part of some dentate gyrus of hippocampal formation

Changes for: spinal cord lateral horn

Deleted
- - spinal cord lateral horn SubClassOf gray matter of spinal cord
Added
- + spinal cord lateral horn SubClassOf spinal cord column

Changes for: spinal cord gray commissure

Deleted
- - spinal cord gray commissure SubClassOf part of some gray matter of spinal cord
- - spinal cord gray commissure SubClassOf spinal cord commissure
Added
- + spinal cord gray commissure SubClassOf lamina of gray matter of spinal cord
- + spinal cord gray commissure database cross reference FMA:68871
- + spinal cord gray commissure database cross reference NeuroNames:1649
- + spinal cord gray commissure database cross reference NeuroNames:1702
- + spinal cord gray commissure has exact synonym lamina X
- + spinal cord gray commissure has exact synonym lamina X of gray matter of spinal cord { database cross reference=FMA:68871 }
- + spinal cord gray commissure has exact synonym rexed lamina X { database cross reference=FMA:68871 }
- + spinal cord gray commissure has exact synonym spinal area X { database cross reference=FMA:68871 }
- + spinal cord gray commissure has exact synonym spinal lamina X { database cross reference=FMA:68871 }
- + spinal cord gray commissure has related synonym Rexed’s lamina X { database cross reference=NeuroNames:1649 }
- + spinal cord gray commissure has related synonym Rexed’s lamina X { database cross reference=NeuroNames:1702 }
- + spinal cord gray commissure has related synonym central gelatinous substance { database cross reference=NeuroNames:1649 }
- + spinal cord gray commissure has related synonym central glial substance { database cross reference=NeuroNames:1649 }
- + spinal cord gray commissure has related synonym lamina 10 { database cross reference=NeuroNames:1702 , has synonym type=latin term }
- + spinal cord gray commissure has related synonym lamina X { database cross reference=NeuroNames:1649 }
- + spinal cord gray commissure has related synonym lamina X { database cross reference=NeuroNames:1702 }
- + spinal cord gray commissure has related synonym lamina spinalis X { database cross reference=NeuroNames:1649 , has synonym type=latin term }
- + spinal cord gray commissure has related synonym lamina spinalis X { database cross reference=NeuroNames:1702 , has synonym type=latin term }
- + spinal cord gray commissure has related synonym substantia gelatinosa centralis { database cross reference=NeuroNames:1702 , has synonym type=latin term }
- + spinal cord gray commissure has related synonym substantia gelatinosa spinalis { database cross reference=NeuroNames:1649 , has synonym type=latin term }
- + spinal cord gray commissure has related synonym substantia gelationsa centralis { database cross reference=NeuroNames:1649 , has synonym type=latin term }
- + spinal cord gray commissure has related synonym substantia gliosa (spinalis) { database cross reference=NeuroNames:1649 , has synonym type=latin term }

Changes for: ependyma

Added
- + ependyma SubClassOf contributes to morphology of some nervous system

Changes for: gyrus rectus

Deleted
- - gyrus rectus SubClassOf cerebral cortex lobe
- - gyrus rectus SubClassOf part of some frontal cortex
- - gyrus rectus SubClassOf part of some neocortex
Added
- + gyrus rectus SubClassOf gyrus
- + gyrus rectus SubClassOf part of some frontal lobe

Changes for: mandible temporal crest

Deleted
- - mandible temporal crest SubClassOf mesoderm-derived structure
Added
- + mandible temporal crest SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: vertebra lamina

Added
- + vertebra lamina SubClassOf contributes to morphology of some neural arch

Changes for: aorta wall

Added
- + aorta wall SubClassOf contributes to morphology of some aorta

Changes for: aorta tunica adventitia

Added
- + aorta tunica adventitia SubClassOf contributes to morphology of some aorta wall

Changes for: interventricular septum membranous part

Added
- + interventricular septum membranous part SubClassOf contributes to morphology of some interventricular septum

Changes for: interventricular septum muscular part

Added
- + interventricular septum muscular part SubClassOf contributes to morphology of some interventricular septum

Changes for: mandible coronoid process

Deleted
- - mandible coronoid process SubClassOf mesoderm-derived structure
Added
- + mandible coronoid process SubClassOf contributes to morphology of some mandibular ramus
- + mandible coronoid process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: mandible condylar process

Deleted
- - mandible condylar process SubClassOf mesoderm-derived structure
Added
- + mandible condylar process SubClassOf contributes to morphology of some mandibular ramus
- + mandible condylar process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: mandible neck

Deleted
- - mandible neck SubClassOf mesoderm-derived structure
Added
- + mandible neck SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: mandible head

Deleted
- - mandible head SubClassOf mesoderm-derived structure
Added
- + mandible head SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: parasympathetic nervous system

Added
- + parasympathetic nervous system SubClassOf contributes to morphology of some autonomic nervous system

Changes for: sympathetic nervous system

Added
- + sympathetic nervous system SubClassOf contributes to morphology of some autonomic nervous system

Changes for: somatic nervous system

Added
- + somatic nervous system SubClassOf contributes to morphology of some nervous system

Changes for: endocrine pancreas

Added
- + endocrine pancreas SubClassOf contributes to morphology of some pancreas

Changes for: exocrine pancreas

Added
- + exocrine pancreas SubClassOf contributes to morphology of some pancreas

Changes for: dorsal hypohyal bone

Added
- + dorsal hypohyal bone SubClassOf endoderm-derived structure

Changes for: lymph node

Deleted
- - lymph node database cross reference TAO:0005318
- - lymph node database cross reference ZFA:0005318
- - lymph node dubious for taxon http://purl.obolibrary.org/obo/NCBITaxon_32443 { source=http://dx.doi.org//10.1177/0192623311409597 , source=ZFA }
Added
- + lymph node database cross reference TAO_RETIRED:0005318
- + lymph node database cross reference ZFA_RETIRED:0005318

Changes for: olfactory apparatus

Added
- + olfactory apparatus SubClassOf contributes to morphology of some face
- + olfactory apparatus SubClassOf contributes to morphology of some respiratory system

Changes for: uterine cervix

Added
- + uterine cervix SubClassOf contributes to morphology of some uterus

Changes for: anterior lingual gland duct

Added
- + anterior lingual gland duct SubClassOf endoderm-derived structure

Changes for: pituitary gland

Added
- + pituitary gland SubClassOf contributes to morphology of some diencephalon

Changes for: islet of Langerhans

Added
- + islet of Langerhans SubClassOf contributes to morphology of some endocrine pancreas

Changes for: pharyngeal arch 7 skeleton

Added
- + pharyngeal arch 7 skeleton SubClassOf endoderm-derived structure

Changes for: pharyngeal arch 3 skeleton

Added
- + pharyngeal arch 3 skeleton SubClassOf endoderm-derived structure

Changes for: centrum semiovale

Deleted
- - centrum semiovale SubClassOf regional part of telencephalon
- - centrum semiovale has exact synonym white matter of cerebrum { database cross reference=FMA:61939 }
Added
- + centrum semiovale SubClassOf cerebral hemisphere white matter
- + centrum semiovale has related synonym cerebral white matter
- + centrum semiovale has related synonym white matter of cerebrum { database cross reference=FMA:61939 }

Changes for: pharyngeal arch 6 skeleton

Added
- + pharyngeal arch 6 skeleton SubClassOf endoderm-derived structure

Changes for: pharyngeal arch 4 skeleton

Added
- + pharyngeal arch 4 skeleton SubClassOf endoderm-derived structure

Changes for: pharyngeal arch 5 skeleton

Added
- + pharyngeal arch 5 skeleton SubClassOf endoderm-derived structure

Changes for: somatosensory cortex

Deleted
- - somatosensory cortex SubClassOf regional part of cerebral cortex
Added
- + somatosensory cortex SubClassOf regional part of telencephalon

Changes for: membrane organ

Added
- + membrane organ SubClassOf composed primarily of some dense connective tissue

Changes for: external ectoderm

Added
- + external ectoderm SubClassOf part of some embryo

Changes for: coronomeckelian

Added
- + coronomeckelian SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: large intestine

Added
- + large intestine SubClassOf contributes to morphology of some intestine

Changes for: postcoracoid

Deleted
- - postcoracoid definition The posterior of the two coracoid elements found in basal tetrapods. Corresponds directly to the “coracoid” of synapsids. [AD]
Added
- + postcoracoid definition The posterior of the two coracoid elements found in basal tetrapods. Corresponds directly to the ‘coracoid’ of synapsids. [AD]

Changes for: obsolete posterior iliac process

Deleted
- - obsolete posterior iliac process definition Posterior most of the two “double heads” of the blade of the ilium in some take. Distinct and separate for the dorsal iliac process. [AD]
Added
- + obsolete posterior iliac process definition Posterior most of the two ‘double heads’ of the blade of the ilium in some take. Distinct and separate for the dorsal iliac process. [AD]

Changes for: pectinate muscle

Added
- + pectinate muscle SubClassOf contributes to morphology of some myocardium of atrium

Changes for: Bachmann’s bundle

Added
- + Bachmann’s bundle SubClassOf contributes to morphology of some conducting system of heart

Changes for: vena cava sinus

Deleted
- - vena cava sinus SubClassOf anatomical cavity
Added
- + vena cava sinus SubClassOf cavity of right atrium
- + vena cava sinus SubClassOf contributes to morphology of some right cardiac atrium

Changes for: heart layer

Added
- + heart layer SubClassOf contributes to morphology of some heart

Changes for: coronary vessel

Added
- + coronary vessel SubClassOf contributes to morphology of some heart

Changes for: atrium myocardial trabecula

Added
- + atrium myocardial trabecula SubClassOf contributes to morphology of some myocardium of atrium

Changes for: aortic valve anulus

Added
- + aortic valve anulus SubClassOf contributes to morphology of some aortic valve

Changes for: aortic valve cusp

Added
- + aortic valve cusp SubClassOf contributes to morphology of some aortic valve

Changes for: mitral valve anulus

Added
- + mitral valve anulus SubClassOf contributes to morphology of some mitral valve

Changes for: chordae tendineae

Added
- + chordae tendineae SubClassOf contributes to morphology of some atrioventricular valve

Changes for: pulmonary valve anulus

Added
- + pulmonary valve anulus SubClassOf contributes to morphology of some pulmonary valve

Changes for: pulmonary valve cusp

Added
- + pulmonary valve cusp SubClassOf contributes to morphology of some pulmonary valve

Changes for: tricuspid valve cusp

Added
- + tricuspid valve cusp SubClassOf contributes to morphology of some tricuspid valve

Changes for: tricuspid valve anulus

Added
- + tricuspid valve anulus SubClassOf contributes to morphology of some tricuspid valve

Changes for: mitral valve cusp

Added
- + mitral valve cusp SubClassOf contributes to morphology of some mitral valve

Changes for: crista terminalis

Added
- + crista terminalis SubClassOf contributes to morphology of some right cardiac atrium

Changes for: axial skeleton plus cranial skeleton

Added
- + axial skeleton plus cranial skeleton SubClassOf contributes to morphology of some skeletal system

Changes for: external naris

Added
- + external naris SubClassOf contributes to morphology of some olfactory apparatus

Changes for: primary choana

Deleted
- - primary choana SubClassOf developing anatomical structure
Added
- + primary choana SubClassOf ectoderm-derived structure
- + primary choana SubClassOf embryonic structure
- + primary choana SubClassOf naris

Changes for: mandibular process mesenchyme

Added
- + mandibular process mesenchyme SubClassOf endoderm-derived structure

Changes for: pharyngeal cleft

Deleted
- - pharyngeal cleft SubClassOf develops from some external ectoderm
- - pharyngeal cleft SubClassOf ecto-epithelium
- - pharyngeal cleft SubClassOf embryonic tissue
- - pharyngeal cleft SubClassOf part of some embryo
- - pharyngeal cleft SubClassOf unilaminar epithelium
- - pharyngeal cleft comment AO notes: some ontologies distringuish between cleft and cleft ectoderm, we merge these here. Editor notes: consider adding location (precursor) - i.e. external (ectodermal). Note we use overlaps as the relationship to the arches
- - pharyngeal cleft definition the counterpart of a branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]. { database cross reference=http://en.wikipedia.org/wiki/Pharyngeal_groove }
- - pharyngeal cleft has exact synonym pharyngeal groove { database cross reference=http://en.wikipedia.org/wiki/Pharyngeal_groove }
Added
- + pharyngeal cleft SubClassOf adjacent to some pharyngeal pouch
- + pharyngeal cleft SubClassOf part of some external ectoderm
- + pharyngeal cleft SubClassOf pharyngeal ectoderm
- + pharyngeal cleft comment Note we use overlaps as the relationship to the arches
- + pharyngeal cleft definition An external pocketing of pharyngeal ectoderm that contacts a region of endoderm (a pharyngeal pouch) and interdigitates in the anterior and posterior directions by the pharyngeal arches. { database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/23020903 , database cross reference=UBERON:cjm }
- + pharyngeal cleft has broad synonym pharyngeal groove { database cross reference=http://en.wikipedia.org/wiki/Pharyngeal_groove }
- + pharyngeal cleft has related synonym pharyngeal ectodermal cleft

Changes for: palatine process of maxilla

Deleted
- - palatine process of maxilla SubClassOf mesoderm-derived structure
Added
- + palatine process of maxilla SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: olfactory pit

Deleted
- - olfactory pit SubClassOf developing anatomical structure
Added
- + olfactory pit SubClassOf located in some nasal cavity epithelium
- + olfactory pit SubClassOf pit

Changes for: pinna surface epithelium

Added
- + pinna surface epithelium SubClassOf structure with developmental contribution from neural crest

Changes for: crista ampullaris neuroepithelium

Added
- + crista ampullaris neuroepithelium SubClassOf contributes to morphology of some crista ampullaris

Changes for: post-hyoid pharyngeal arch skeleton

Added
- + post-hyoid pharyngeal arch skeleton SubClassOf endoderm-derived structure

Changes for: hyoid arch skeleton

Added
- + hyoid arch skeleton SubClassOf endoderm-derived structure

Changes for: gracile fasciculus

Deleted
- - gracile fasciculus SubClassOf nerve fasciculus
- - gracile fasciculus comment distinction between axon tract and fasicule is unclear, we create is_a parentage to both
- - gracile fasciculus has exact synonym tract of Goll { database cross reference=GO:0021958 }
Added
- + gracile fasciculus comment distinction between axon tract and fasicule is unclear
- + gracile fasciculus has related synonym tract of Goll { database cross reference=GO:0021958 }

Changes for: gracile fasciculus of spinal cord

Deleted
- - gracile fasciculus of spinal cord SubClassOf fasciculus of spinal cord
- - gracile fasciculus of spinal cord comment editor note: check ontology structure, isa parentage to fasciculus of spinal cord should be inferred

Changes for: mandible angular process

Deleted
- - mandible angular process SubClassOf mesoderm-derived structure
Added
- + mandible angular process SubClassOf contributes to morphology of some mandible
- + mandible angular process SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: cuneate fasciculus

Added
- + cuneate fasciculus SubClassOf nerve fasciculus

Changes for: cuneate fasciculus of spinal cord

Deleted
- - cuneate fasciculus of spinal cord definition The fasciculus cuneatus (tract of Burdach, named for Karl Friedrich Burdach) is a bundle of nerves in the spinal cord which primarily transmits information from the arms. It is part of the posterior column-medial lemniscus pathway. { database cross reference=http://en.wikipedia.org/wiki/Cuneate_fasciculus , database cross reference=GO:0021959 }
Added
- + cuneate fasciculus of spinal cord definition An axon tract in the spinal cord which primarily transmits information from the forelimb and trunk. It is part of the posterior column-medial lemniscus pathway. { database cross reference=http://en.wikipedia.org/wiki/Cuneate_fasciculus , database cross reference=GO:0021959 , database cross reference=UBERON:cjm }

Changes for: fasciculus of brain

Added
- + fasciculus of brain SubClassOf part of some white matter

Changes for: thoracic spinal cord dorsal column

Deleted
- - thoracic spinal cord dorsal column SubClassOf thoracic spinal cord white matter

Changes for: cervical spinal cord dorsal column

Deleted
- - cervical spinal cord dorsal column SubClassOf cervical spinal cord white matter

Changes for: cervical spinal cord lateral column

Deleted
- - cervical spinal cord lateral column SubClassOf cervical spinal cord white matter

Changes for: thoracic spinal cord lateral column

Deleted
- - thoracic spinal cord lateral column SubClassOf thoracic spinal cord white matter

Changes for: sacral spinal cord ventral column

Deleted
- - sacral spinal cord ventral column SubClassOf part of some spinal cord ventral column
- - sacral spinal cord ventral column SubClassOf white matter of spinal cord
Added
- + sacral spinal cord ventral column EquivalentTo subdivision of spinal cord ventral column and part of some sacral spinal cord
- + sacral spinal cord ventral column SubClassOf subdivision of spinal cord ventral column

Changes for: cervical spinal cord ventral column

Deleted
- - cervical spinal cord ventral column SubClassOf cervical spinal cord white matter
- - cervical spinal cord ventral column SubClassOf part of some spinal cord ventral column
Added
- + cervical spinal cord ventral column EquivalentTo subdivision of spinal cord ventral column and part of some cervical spinal cord
- + cervical spinal cord ventral column SubClassOf subdivision of spinal cord ventral column

Changes for: lumbar spinal cord ventral column

Deleted
- - lumbar spinal cord ventral column SubClassOf part of some spinal cord ventral column
- - lumbar spinal cord ventral column SubClassOf white matter of spinal cord
Added
- + lumbar spinal cord ventral column EquivalentTo subdivision of spinal cord ventral column and part of some lumbar spinal cord
- + lumbar spinal cord ventral column SubClassOf subdivision of spinal cord ventral column

Changes for: thoracic spinal cord ventral column

Deleted
- - thoracic spinal cord ventral column SubClassOf part of some spinal cord ventral column
- - thoracic spinal cord ventral column SubClassOf thoracic spinal cord white matter
Added
- + thoracic spinal cord ventral column EquivalentTo subdivision of spinal cord ventral column and part of some thoracic spinal cord
- + thoracic spinal cord ventral column SubClassOf subdivision of spinal cord ventral column

Changes for: camptotrichium

Deleted
- - camptotrichium comment From Witten & Huysseune (2007): “Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G�raudie and Meunier 1982).”
Added
- + camptotrichium comment From Witten & Huysseune (2007): ‘Two zones have been recognized in these camptotrichia: a superficial region of acellular fibrous bone, and a deep, mostly unmineralized, zone (G�raudie and Meunier 1982).’

Changes for: cochlear ganglion

Deleted
- - cochlear ganglion definition group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. { database cross reference=http://en.wikipedia.org/wiki/Spiral_ganglion , database cross reference=MP:0002855 }
Added
- + cochlear ganglion EquivalentTo cranial ganglion and part of some vestibulocochlear ganglion and part of some auditory system
- + cochlear ganglion SubClassOf part of some auditory system
- + cochlear ganglion definition The group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]. distributed to the hair cells of the spiral organ. The cochlear fibers arise in bipolar cells in the spiral ganglion in the modiolus. { database cross reference=http://www.dartmouth.edu/~humananatomy/part_8/chapter_44.html , database cross reference=MP:0002855 }
- + cochlear ganglion has exact synonym cochlear part of vestibulocochlear ganglion { database cross reference=UBERON:cjm }

Changes for: urinary bladder detrusor smooth muscle

Added
- + urinary bladder detrusor smooth muscle SubClassOf contributes to morphology of some urinary bladder

Changes for: tongue muscle

Deleted
- - tongue muscle SubClassOf ectoderm-derived structure
- - tongue muscle SubClassOf mesoderm-derived structure
Added
- + tongue muscle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: hindlimb stylopod

Added
- + hindlimb stylopod SubClassOf contributes to morphology of some hindlimb

Changes for: renal medulla

Added
- + renal medulla SubClassOf contributes to morphology of some kidney

Changes for: myelin sheath

Added
- + myelin sheath comment cede to GO

Changes for: lateral tuberal nucleus

Deleted
- - lateral tuberal nucleus SubClassOf regional part of lateral hypothalamic region

Changes for: arachnoid barrier layer

Added
- + arachnoid barrier layer SubClassOf part of some endothelial blood brain barrier

Changes for: endopeduncular nucleus

Deleted
- - endopeduncular nucleus SubClassOf telencephalic nucleus

Changes for: visceral layer of glomerular capsule

Added
- + visceral layer of glomerular capsule SubClassOf contributes to morphology of some glomerular capsule

Changes for: mandibular ramus

Deleted
- - mandibular ramus SubClassOf mesoderm-derived structure
Added
- + mandibular ramus SubClassOf contributes to morphology of some mandible
- + mandibular ramus SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: lamina densa of glomerular basement membrane

Deleted
- - lamina densa of glomerular basement membrane EquivalentTo acellular anatomical structure and part of some glomerular basement membrane and adjacent to some lamina rara interna and adjacent to some lamina rara externa
- - lamina densa of glomerular basement membrane SubClassOf acellular anatomical structure
Added
- + lamina densa of glomerular basement membrane EquivalentTo acellular membrane and part of some glomerular basement membrane and adjacent to some lamina rara interna and adjacent to some lamina rara externa
- + lamina densa of glomerular basement membrane SubClassOf acellular membrane

Changes for: primary palate mesenchyme

Added
- + primary palate mesenchyme SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: pelvic girdle bone/zone

Added
- + pelvic girdle bone/zone SubClassOf contributes to morphology of some appendicular skeleton

Changes for: primary palate

Deleted
- - primary palate SubClassOf mesoderm-derived structure
Added
- + primary palate SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: secondary palatal shelf epithelium

Added
- + secondary palatal shelf epithelium SubClassOf endo-epithelium

Changes for: primary palate epithelium

Added
- + primary palate epithelium SubClassOf endo-epithelium
- + primary palate epithelium SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: 2nd arch ectoderm

Added
- + 2nd arch ectoderm SubClassOf endoderm-derived structure

Changes for: 3rd arch ectoderm

Added
- + 3rd arch ectoderm SubClassOf endoderm-derived structure

Changes for: 4th arch ectoderm

Added
- + 4th arch ectoderm SubClassOf endoderm-derived structure

Changes for: 2nd arch endoderm

Added
- + 2nd arch endoderm SubClassOf endoderm-derived structure

Changes for: 3rd arch endoderm

Added
- + 3rd arch endoderm SubClassOf endoderm-derived structure

Changes for: 4th arch endoderm

Added
- + 4th arch endoderm SubClassOf endoderm-derived structure

Changes for: secondary palatal shelf

Added
- + secondary palatal shelf SubClassOf endoderm-derived structure

Changes for: rostral motor nucleus of abducens

Deleted
- - rostral motor nucleus of abducens SubClassOf regional part of metencephalon
Added
- + rostral motor nucleus of abducens SubClassOf structure with developmental contribution from neural crest

Changes for: entopterygoid

Added
- + entopterygoid SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: cerebellum vasculature

Deleted
- - cerebellum vasculature SubClassOf brain vasculature
Added
- + cerebellum vasculature SubClassOf ectoderm-derived structure
- + cerebellum vasculature SubClassOf vasculature of organ

Changes for: interopercle

Added
- + interopercle SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: incisive canal

Added
- + incisive canal SubClassOf endoderm-derived structure

Changes for: sublingual caruncle

Added
- + sublingual caruncle SubClassOf endoderm-derived structure

Changes for: entopterygoid vertical strut

Deleted
- - entopterygoid vertical strut SubClassOf mesoderm-derived structure
Added
- + entopterygoid vertical strut SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: symplectic

Added
- + symplectic SubClassOf endoderm-derived structure

Changes for: ceratobranchial 5 tooth

Added
- + ceratobranchial 5 tooth SubClassOf endoderm-derived structure

Changes for: bone of appendage girdle complex

Added
- + bone of appendage girdle complex SubClassOf contributes to morphology of some appendicular skeleton

Changes for: alisphenoid cartilage element

Added
- + alisphenoid cartilage element SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: alisphenoid pre-cartilage condensation

Added
- + alisphenoid pre-cartilage condensation SubClassOf mixed ectoderm/mesoderm/endoderm-derived structure

Changes for: atrium auricular region

Added
- + atrium auricular region SubClassOf contributes to morphology of some cardiac atrium

Changes for: mandibular symphysis

Added
- + mandibular symphysis SubClassOf endoderm-derived structure

Changes for: alveolar canal

Added
- + alveolar canal SubClassOf endoderm-derived structure

Changes for: great cerebral vein

Added
- + great cerebral vein database cross reference http://en.wikipedia.org/wiki/Internal_cerebral_veins

Changes for: autopalatine

Added
- + autopalatine SubClassOf endoderm-derived structure

Changes for: posterior ceratohyal

Added
- + posterior ceratohyal SubClassOf endoderm-derived structure

Changes for: caudal motor nucleus of abducens

Deleted
- - caudal motor nucleus of abducens SubClassOf regional part of metencephalon
Added
- + caudal motor nucleus of abducens SubClassOf structure with developmental contribution from neural crest

Changes for: muscle layer of epididymis

Added
- + muscle layer of epididymis database cross reference EMAPA:30747

Changes for: hyoid muscle

Deleted
- - hyoid muscle SubClassOf mesoderm-derived structure
Added
- + hyoid muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: hypothalamic nucleus

Deleted
- - hypothalamic nucleus SubClassOf regional part of hypothalamus

Changes for: diencephalic nucleus

Deleted
- - diencephalic nucleus SubClassOf regional part of diencephalon

Changes for: quadrate bone

Added
- + quadrate bone SubClassOf endoderm-derived structure

Changes for: alveolar system

Added
- + alveolar system SubClassOf contributes to morphology of some lung

Changes for: kidney calyx

Added
- + kidney calyx SubClassOf contributes to morphology of some renal pelvis

Changes for: hepatic cord

Added
- + hepatic cord SubClassOf contributes to morphology of some liver

Changes for: philtrum

Deleted
- - philtrum SubClassOf surface structure
Added
- + philtrum SubClassOf contributes to morphology of some upper lip
- + philtrum SubClassOf endoderm-derived structure

Changes for: ventral striatum

Added
- + ventral striatum SubClassOf contributes to morphology of some striatum

Changes for: hippocampus granule cell layer

Added
- + hippocampus granule cell layer has related synonym hippocampus granular layer

Changes for: hippocampus molecular layer

Added
- + hippocampus molecular layer SubClassOf contributes to morphology of some layer of hippocampus

Changes for: gill raker row

Added
- + gill raker row SubClassOf endoderm-derived structure

Changes for: hippocampus stratum lacunosum

Added
- + hippocampus stratum lacunosum SubClassOf contributes to morphology of some layer of hippocampus

Changes for: hippocampus stratum oriens

Added
- + hippocampus stratum oriens EquivalentTo layer of hippocampus and immediately deep to some hippocampus pyramidal layer and immediately superficial to some hippocampus alveus
- + hippocampus stratum oriens SubClassOf immediately deep to some hippocampus pyramidal layer
- + hippocampus stratum oriens SubClassOf immediately superficial to some hippocampus alveus

Changes for: spinal cord dorsal column

Deleted
- - spinal cord dorsal column SubClassOf white matter of spinal cord
Added
- + spinal cord dorsal column SubClassOf contributes to morphology of some white matter of spinal cord
- + spinal cord dorsal column SubClassOf spinal cord column

Changes for: spinal cord lateral column

Deleted
- - spinal cord lateral column SubClassOf white matter of spinal cord
Added
- + spinal cord lateral column SubClassOf contributes to morphology of some white matter of spinal cord
- + spinal cord lateral column SubClassOf part of some white matter of spinal cord
- + spinal cord lateral column SubClassOf spinal cord column

Changes for: spinal cord ventral column

Deleted
- - spinal cord ventral column SubClassOf white matter of spinal cord
Added
- + spinal cord ventral column SubClassOf contributes to morphology of some white matter of spinal cord
- + spinal cord ventral column SubClassOf spinal cord column

Changes for: malleus head

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- + malleus head SubClassOf contributes to morphology of some malleus bone
- + malleus head SubClassOf endoderm-derived structure

Changes for: dorsal telencephalic commissure

Deleted
- - dorsal telencephalic commissure SubClassOf part of some pallium
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- + dorsal telencephalic commissure SubClassOf connects some pallium
- + dorsal telencephalic commissure SubClassOf part of some telencephalon

Changes for: paraflocculus

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- + paraflocculus SubClassOf contributes to morphology of some cerebellar hemisphere

Changes for: spermatic cord

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- + spermatic cord SubClassOf contributes to morphology of some internal male genitalia

Changes for: spleen perifollicular zone

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- + spleen perifollicular zone SubClassOf contributes to morphology of some spleen

Changes for: spinal cord ependyma

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- + spinal cord ependyma SubClassOf contributes to morphology of some spinal cord

Changes for: malleus processus brevis

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- + malleus processus brevis SubClassOf contributes to morphology of some malleus bone
- + malleus processus brevis SubClassOf endoderm-derived structure

Changes for: malleus neck

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- + malleus neck SubClassOf contributes to morphology of some malleus bone
- + malleus neck SubClassOf endoderm-derived structure

Changes for: brain ependyma

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- + brain ependyma SubClassOf contributes to morphology of some brain ventricle/choroid plexus

Changes for: olfactory glomerulus

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- - olfactory glomerulus comment subcellular component, realm of GO?
- - olfactory glomerulus definition One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]. a spherical structure located in the olfactory bulb of the brain where the synapses form between the olfactory nerve terminals and dendrites of mitral, periglomerular and tufted cells. Each glomerulus is surrounded by periglomerular neurons and glial cells which gives it an oval shape.[1][2] All glomeruli are located near the surface of the olfactory bulb. In mammals, glomeruli typically range between 50-120 µm in diameter and number between 1800 and 2400 depending on the species.[1][2] Each glomerulus is composed of two compartments, the olfactory nerve zone and the non-olfactory nerve zone. The olfactory nerve zone is composed of preterminals and terminals of the olfactory nerve and is where the olfactory receptor cells make synapses on their targets.[2] The non-olfactory nerve zone is composed of the dendritic processes of intrinsic neurons and is where dendrodendritic interactions between intrinsic neurons occur.[2] It is the first site for synaptic processing of odor information coming from the nose. It is made up of a globular tangle of axons from the olfactory receptor neurons in the olfactory epithelium, and dendrites from the mitral cell as well as from juxtaglomerular cells that include tufted cells, periglomerular cells, short axon cells, and astrocytes[WP]. { database cross reference=http://en.wikipedia.org/wiki/Glomerulus_(olfaction) , database cross reference=Dorlands_Medical_Dictionary:MerckMedicus }
Added
- + olfactory glomerulus SubClassOf part of some olfactory bulb glomerular layer
- + olfactory glomerulus database cross reference ZFA:0005661
- + olfactory glomerulus definition One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]. { database cross reference=http://en.wikipedia.org/wiki/Glomerulus_(olfaction) , database cross reference=Dorlands_Medical_Dictionary:MerckMedicus }
- + olfactory glomerulus external definition Multi-tissue structure part of the olfactory bulb that is roughly spheroidal and encircled by olfactory sensory neuron axons that formed an anatomically distinct stalk connected to the olfactory nerve[ZFA]. { source=ZFA:0005661 , source=ZFIN:ZDB-PUB-120516-14 }

Changes for: nasal cavity epithelium

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- + nasal cavity epithelium SubClassOf contributes to morphology of some olfactory apparatus
- + nasal cavity epithelium SubClassOf contributes to morphology of some respiratory system mucosa

Changes for: caudate-putamen

Added
- + caudate-putamen SubClassOf contributes to morphology of some striatum

Changes for: olfactory bulb subependymal zone

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- + olfactory bulb subependymal zone SubClassOf contributes to morphology of some olfactory bulb

Changes for: deep part of masseter muscle

Deleted
- - deep part of masseter muscle SubClassOf mesoderm-derived structure
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- + deep part of masseter muscle SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: frontalis

Deleted
- - frontalis SubClassOf mesoderm-derived structure
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- + frontalis SubClassOf mixed endoderm/mesoderm-derived structure

Changes for: nasalis muscle

Deleted
- - nasalis muscle definition The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into “Compressor nasalis” and “Dilator nasalis”. { database cross reference=http://en.wikipedia.org/wiki/Nasalis_muscle }
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- + nasalis muscle definition The nasalis (compressor naris) is a sphincter-like muscle of the nose whose function is to compress the nasal cartilage. It consists of two parts, transverse and alar: The transverse part arises from the maxilla, above and lateral to the incisive fossa; its fibers proceed upward and medially, expanding into a thin aponeurosis which is continuous on the bridge of the nose with that of the muscle of the opposite side, and with the aponeurosis of the Procerus. The alar part is attached at one end to the greater alar cartilage, and at the other to the integument at the point of the nose. Other sources divide it into ‘Compressor nasalis’ and ‘Dilator nasalis’. { database cross reference=http://en.wikipedia.org/wiki/Nasalis_muscle }