/releases/2014-03-26/uberon

This release brings in multiple additional lymph node types, with notes from Van den Broek et al Anatomy and nomenclature of murine lymph nodes PMID:16624319. Also: multiple additional terms required for phenotype ontology logical defs.
/releases/2014-03-26/uberon image
  • NTs: multiple, for HPO logical definitions
  • NTs: lymph nodes. Using Van den Broek
  • added more NCITA, SNOMED xrefs
  • NTs: heel, heel skin

Ontology Diff Report

Original Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-03-20/uberon.owl

New Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-03-26/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 90

New Class : paraaortic lymph node

New Class : prescapular lymph node

New Class : sciatic lymph node

New Class : ileocecocolic lymph node

New Class : lymph node of upper limb

New Class : lymph node of lower limb

New Class : thymic lymph node

New Class : auricular lymph node

New Class : deep parotid lymph node

New Class : mastoid lymph node

New Class : infra-auricular lymph node

New Class : anterior auricular lymph node

New Class : submental lymph node

New Class : intraglandular lymph node

New Class : bony part of vertebral arch

New Class : nasion

New Class : intergluteal cleft

New Class : central part of body of vertebra

New Class : male breast

New Class : anterior chest

New Class : medullary cavity of long bone

New Class : compact bone of long bone

New Class : compact bone of diaphysis

New Class : epiphyseal plate of radius

New Class : proximal interphalangeal joint of little finger

New Class : base of glans penis

New Class : corona of glans penis

New Class : colic lymph node

New Class : thoracic wall

New Class : cervical vertebral arch joint

New Class : pulmonary capillary

New Class : infrapatellar fat pad

New Class : pancreaticoduodenal lymph node

New Class : upper secondary premolar tooth

New Class : upper lateral secondary incisor tooth

New Class : upper central secondary incisor tooth

New Class : lower secondary premolar tooth

New Class : posterior pole of lens

New Class : esophageal hiatus

New Class : periorbital skin

New Class : dorsum of nose

New Class : antitragus

New Class : antihelix

New Class : palmar branch of median nerve

New Class : chest wall

New Class : glabella

New Class : hair of trunk

New Class : hair of head

New Class : median palatine suture

New Class : interlobular stroma of liver

New Class : bronchial lymph node

New Class : skin of forehead

New Class : primary incisor tooth

New Class : zygomatic process of maxilla

New Class : liver stroma

New Class : fibrous capsule of liver

New Class : accessory mandibular lymph node

New Class : superficial parotid lymph node

New Class : superficial intraparotid lymph node

New Class : cranial deep lymph node

New Class : genital lymph node

New Class : superficial lymph node

New Class : deep lymph node

New Class : tonsillar lymph node

New Class : external iliac lymph node

New Class : root of nail

New Class : cymba conchae of pinna

New Class : presymphysial lymph node

New Class : gluteal lymph node

New Class : internal iliac lymph node

New Class : proximal deep inguinal lymph node

New Class : visceral abdominal lymph node

New Class : pyloric lymph node

New Class : pancreaticosplenic lymph node

New Class : gastric lymph node

New Class : retropharyngeal lymph node

New Class : cystic lymph node

New Class : lymph node of epiploic foramen

New Class : facial lymph node

New Class : lymph node of head

New Class : heel skin

New Class : mandibular lymph node

New Class : heel

New Class : parietal pelvic lymph node

New Class : pelvic lymph node

New Class : common iliac lymph node

New Class : interpedicular line

New Class : ventral ectodermal ridge

New Class : parotid lymph node

New Class : hepatic lymph node

Changed Class objects: 52

Changes for: capillary blood

Changes for: gingiva of upper jaw

Changes for: gingiva of lower jaw

Changes for: feces

Changes for: dorsal part of neck

Changes for: anterior auricular vein

Changes for: densocellular part of medial dorsal nucleus

Changes for: septal nuclear complex

Changes for: popliteal lymph node

Changes for: thenar muscle

Changes for: circular sulcus of insula

Changes for: superficial cervical lymph node

Changes for: pyramidal tract

Changes for: lumbar lymph node

Changes for: pancreatic lymph node

Changes for: submandibular lymph node

Changes for: chest

Changes for: compact bone tissue

Changes for: paracentral sulcus

Changes for: posterior nasal aperture

Changes for: transverse orbital sulcus

Changes for: blastodisc

Changes for: deep cervical lymph node

Changes for: popliteal area

Changes for: brown adipose tissue

Changes for: deep inguinal lymph node

Changes for: superficial inguinal lymph node

Changes for: ventral posteromedial nucleus of thalamus

Changes for: ventral posterolateral nucleus

Changes for: caudal part of ventral posterolateral nucleus of thalamus

Changes for: liver parenchyma

Changes for: renal lymph node

Changes for: pinna hair

Changes for: perineural vascular plexus

  • Deleted
  • Added
    • + perineural vascular plexus definition the capillary bed that initially surrounds the relative avascular brain and spinal cord; the perineural vascular plexus (PNVP) is the precursor to the blood brain barrier formed by angioblasts which migrate away from somites and is recruited to surround the neural tube in response to VEGF; vascularization of the brain and spinal cord occurs via angiogenesis as sprouting vessels from the PNVP invade the neuroepithelium and grow inward toward the ventricular lumen[MP]. { database cross reference=MP:0012732 }

Changes for: nail matrix

Changes for: bare area of liver

Changes for: osteon

Changes for: strand of zigzag hair

Changes for: pedicle of vertebra

Changes for: celiac lymph node

Changes for: mesenteric lymph node

Changes for: Brodmann area

Changes for: anterior choroidal artery

Changes for: strand of hair of face

Changes for: heart tube

Changes for: rostral migratory stream

  • Deleted
    • - rostral migratory stream external definition The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP[Wikipedia:Rostral_migratory_stream]] { source=Wikipedia:Rostral_migratory_stream }
  • Added
    • + rostral migratory stream external definition The rostral migratory stream (RMS) or rostral migratory pathway is a pathway, found in the brain of some animals, along which neuronal precursors that originated in the subventricular zone (SVZ) of the brain migrate to reach the main olfactory bulb, where they differentiate into interneurons. Neurogenesis has been shown to occur in the SVZ into adulthood[WP] { source=Wikipedia:Rostral_migratory_stream }

Changes for: systemic venous system

  • Deleted
    • - systemic venous system external definition In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP]] { source=Wikipedia:Systemic_venous_system }
  • Added
    • + systemic venous system external definition In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP] { source=Wikipedia:Systemic_venous_system }

Changes for: intermediate mesoderm

Changes for: tracheobronchial lymph node

Changes for: lymph node

Changes for: external elastic membrane

Changes for: non-neural ectoderm

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 0

March 26, 2014 |

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