Incremental release, with new skeletal, glandular, neuroanatomical and heart classes

Ontology Diff Report

• Cardiovascular NT: left atrium endocardium. Fixes #637
• Musculoskeletal
  • First pass at NT scapular muscle. Issue #640
  • NT: Intermaxillary Suture. [Mark Engelsted]. Fixes #642
  • Adding disjoints for joints, sutures and synchrondroses
• Neuro
  • added various syns and xrefs for brain; prep for aligning with common mammalian nomenclature [Mihail Bota]
  • NT: {sacral,cervical} sympathetic nerve trunk.
  • NT: {medial,anterior} pretectal nucleus
• Misc.
  • NT: pineal parenchyma
  • NT: gland lumen
  • Xrefs: Removed weird dbpedia derived uuescaping. fixes #639
  • Relations: switched some site-ofs to contains_process
  • Obsoleted ‘globe’, replaced by existing term for eyeball

Original Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2015-02-02/uberon.owl

New Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2015-02-14/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 9

New Class : intermaxillary suture

• intermaxillary suture label intermaxillary suture
• intermaxillary suture has obo namespace uberon
• intermaxillary suture SubClassOf facial suture
• intermaxillary suture id UBERON:0034909
• intermaxillary suture EquivalentTo cranial suture and ObjectMinCardinality( connects maxilla ) and ObjectMaxCardinality( connects maxilla )
• intermaxillary suture comment in humans, the upper maxillae (the upper jaw) is composed of the right and left maxilla bones, which are fused in the midline at the intermaxillary suture to form the upper jaw.[https://orcid.org/0000-0001-5889-4463]
• intermaxillary suture database cross reference FMA:52963
• intermaxillary suture SubClassOf part of some upper jaw region
• intermaxillary suture definition A cranial suture in the midline of the skull that connects the left and right maxilla bones { database cross reference=http://www.researchgate.net/publication/255909975_Relationship_between_intermaxillary_suture_and_midline_diastema , database cross reference=https://orcid.org/0000-0001-5889-4463 }
• intermaxillary suture has exact synonym intermaxillary suture of skull { database cross reference=FMA:52963 }

New Class : pineal parenchyma

• pineal parenchyma database cross reference http://ncicb.nci.nih.gov/xml/owl/EVS/Pineal_Parenchyma
• pineal parenchyma database cross reference http://linkedlifedata.com/resource/umls/id/C1519088
• pineal parenchyma SubClassOf parenchyma of central nervous system
• pineal parenchyma definition Parenchymal tissue that forms the pineal gland. { database cross reference=UBERON:cjm }
• pineal parenchyma EquivalentTo parenchyma and part of some pineal body
• pineal parenchyma id UBERON:0034907
• pineal parenchyma label pineal parenchyma
• pineal parenchyma has obo namespace uberon
• pineal parenchyma SubClassOf part of some pineal body

New Class : scapular muscle

• scapular muscle definition Any of the muscles that are responsible for moving the scapula. In humans these are the levator scapulae, the infraspinatus muscle, the teres major, the teres minor, and the supraspinatus muscle. { database cross reference=HPO:curators }
• scapular muscle SubClassOf attaches to some scapula
• scapular muscle has obo namespace uberon
• scapular muscle id UBERON:0034908
• scapular muscle label scapular muscle
• scapular muscle EquivalentTo muscle organ and attaches to some scapula
• scapular muscle SubClassOf muscle organ

New Class : gland lumen

• gland lumen SubClassOf luminal space of some gland
• gland lumen label gland lumen
• gland lumen EquivalentTo anatomical space and luminal space of some gland
• gland lumen has obo namespace uberon
• gland lumen SubClassOf anatomical space
• gland lumen id UBERON:0034905
• gland lumen has exact synonym lumen of gland

New Class : left atrium endocardium

• left atrium endocardium has related synonym left atrium endocardial tissue { database cross reference=VHOG:0001226 }
• left atrium endocardium id UBERON:0034903
• left atrium endocardium definition Endocardium that is part of the left atrium. { database cross reference=UBERON:cjm }
• left atrium endocardium database cross reference http://www.snomedbrowser.com/Codes/Details/190064008
• left atrium endocardium EquivalentTo endocardium and part of some left cardiac atrium
• left atrium endocardium has exact synonym endocardium of left atrium { database cross reference=FMA:7286 }
• left atrium endocardium SubClassOf part of some left cardiac atrium
• left atrium endocardium has obo namespace uberon
• left atrium endocardium database cross reference VHOG:0001226
• left atrium endocardium external definition Endocardium of atrium which is continuous with the tunica intima of the trunk of pulmonary vein. { source=FMA:7286 }
• left atrium endocardium database cross reference FMA:7286
• left atrium endocardium SubClassOf endocardium of atrium
• left atrium endocardium has exact synonym left atrial endocardium
• left atrium endocardium label left atrium endocardium

New Class : cervical sympathetic nerve trunk

• cervical sympathetic nerve trunk has exact synonym cervical sympathetic chain { database cross reference=FMA:6261 }
• cervical sympathetic nerve trunk id UBERON:0034901
• cervical sympathetic nerve trunk SubClassOf sympathetic nerve trunk
• cervical sympathetic nerve trunk SubClassOf part of some cervical region
• cervical sympathetic nerve trunk has obo namespace uberon
• cervical sympathetic nerve trunk database cross reference FMA:6261
• cervical sympathetic nerve trunk has exact synonym cervical part of sympathetic trunk { database cross reference=FMA:6261 }
• cervical sympathetic nerve trunk has exact synonym cervical sympathetic trunk { database cross reference=FMA:6261 }
• cervical sympathetic nerve trunk EquivalentTo sympathetic nerve trunk and part of some cervical region
• cervical sympathetic nerve trunk label cervical sympathetic nerve trunk
• cervical sympathetic nerve trunk database cross reference http://www.snomedbrowser.com/Codes/Details/280533000

New Class : sacral sympathetic nerve trunk

• sacral sympathetic nerve trunk EquivalentTo sympathetic nerve trunk and part of some sacral region
• sacral sympathetic nerve trunk database cross reference MA:0001164
• sacral sympathetic nerve trunk has exact synonym sacral sympathetic trunk { database cross reference=FMA:6264 }
• sacral sympathetic nerve trunk has related synonym pelvic sympathetic trunk
• sacral sympathetic nerve trunk has obo namespace uberon
• sacral sympathetic nerve trunk label sacral sympathetic nerve trunk
• sacral sympathetic nerve trunk database cross reference FMA:6264
• sacral sympathetic nerve trunk SubClassOf part of some sacral region
• sacral sympathetic nerve trunk id UBERON:0034902
• sacral sympathetic nerve trunk has exact synonym sacral sympathetic chain { database cross reference=FMA:6264 }
• sacral sympathetic nerve trunk SubClassOf sympathetic nerve trunk
• sacral sympathetic nerve trunk has related synonym pelvic sympathetic nerve trunk { database cross reference=MA:0001164 }
• sacral sympathetic nerve trunk has exact synonym sacral part of sympathetic trunk { database cross reference=FMA:6264 }

New Class : anterior pretectal nucleus

• anterior pretectal nucleus database cross reference DHBA:12187
• anterior pretectal nucleus has obo namespace uberon
• anterior pretectal nucleus SubClassOf nucleus of midbrain tectum
• anterior pretectal nucleus database cross reference http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1116
• anterior pretectal nucleus has related synonym anterior pretectal nucleus { database cross reference=NeuroNames:1116 }
• anterior pretectal nucleus SubClassOf pretectal nucleus
• anterior pretectal nucleus has exact synonym anterior (ventral /principal) pretectal nucleus { database cross reference=DHBA:12187 }
• anterior pretectal nucleus id UBERON:0034918
• anterior pretectal nucleus database cross reference http://uri.neuinfo.org/nif/nifstd/nlx_144456
• anterior pretectal nucleus SubClassOf part of some pretectal region
• anterior pretectal nucleus label anterior pretectal nucleus

New Class : medial pretectal nucleus

• medial pretectal nucleus id UBERON:0034910
• medial pretectal nucleus has related synonym MPT { database cross reference=DHBA:12184 , has synonym type=abbreviation }
• medial pretectal nucleus has related synonym MPT { database cross reference=DMBA:16585 , has synonym type=abbreviation }
• medial pretectal nucleus SubClassOf nucleus of midbrain tectum
• medial pretectal nucleus database cross reference http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1176
• medial pretectal nucleus database cross reference DMBA:16585
• medial pretectal nucleus has obo namespace uberon
• medial pretectal nucleus database cross reference DHBA:12184
• medial pretectal nucleus has related synonym medial pretectal area { database cross reference=NeuroNames:1176 }
• medial pretectal nucleus SubClassOf part of some pretectal region
• medial pretectal nucleus has related synonym medial pretectal nucleus { database cross reference=NeuroNames:1176 }
• medial pretectal nucleus SubClassOf pretectal nucleus
• medial pretectal nucleus label medial pretectal nucleus

Changed Class objects: 90

Changes for: paranigral nucleus

• Added
  • + paranigral nucleus SubClassOf nucleus of midbrain tegmentum

Changes for: parabrachial pigmental nucleus

• Added
  • + parabrachial pigmental nucleus SubClassOf nucleus of midbrain tegmentum

Changes for: pubococcygeus muscle

• Deleted
  • - pubococcygeus muscle has related synonym %22pc%22 muscle { database cross reference=http://en.wikipedia.org/wiki/Pubococcygeus_muscle }

Changes for: lateral geniculate nucleus parvocellular layer

• Deleted
  • - lateral geniculate nucleus parvocellular layer SubClassOf central nervous system cell part cluster
  • - lateral geniculate nucleus parvocellular layer SubClassOf nervous system cell part layer
• Added
  • + lateral geniculate nucleus parvocellular layer SubClassOf layer of lateral geniculate body

Changes for: endocardium of left auricle

• Added
  • + endocardium of left auricle SubClassOf left atrium endocardium

Changes for: dorsomedial nucleus of hypothalamus

• Added
  • + dorsomedial nucleus of hypothalamus has broad synonym dorsomedial nucleus

Changes for: pretectal region

• Deleted
  • - pretectal region comment part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP)
• Added
  • + pretectal region comment AO notes: part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP)
  • + pretectal region database cross reference XAO:0004303
  • + pretectal region database cross reference http://en.wikipedia.org/wiki/Pretectal_area
  • + pretectal region database cross reference http://uri.neuinfo.org/nif/nifstd/nlx_59721
  • + pretectal region external definition Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542) { source=NIFSTD:nlx_59721 }

Changes for: midbrain tegmentum

• Added
  • + midbrain tegmentum database cross reference XAO:0004271

Changes for: red nucleus

• Deleted
  • - red nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + red nucleus SubClassOf brainstem nucleus
  • + red nucleus SubClassOf midbrain nucleus

Changes for: corneal endothelium

• Deleted
  • - corneal endothelium SubClassOf corneal epithelium
• Added
  • + corneal endothelium SubClassOf adjacent to some anterior chamber of eyeball
  • + corneal endothelium SubClassOf develops from some neural crest
  • + corneal endothelium SubClassOf eye epithelium
  • + corneal endothelium SubClassOf neural crest-derived structure

Changes for: nucleus of optic tract

• Deleted
  • - nucleus of optic tract database cross reference BAMS:OT

Changes for: nucleus of diagonal band

• Added
  • + nucleus of diagonal band has exact synonym nucleus of diagonal band (of Broca)

Changes for: corneal epithelium

• Deleted
  • - corneal epithelium EquivalentTo epithelium and part of some cornea
  • - corneal epithelium SubClassOf part of some cornea
• Added
  • + corneal epithelium EquivalentTo epithelium and bounding layer of some cornea
  • + corneal epithelium SubClassOf bounding layer of some cornea

Changes for: mesencephalic nucleus of trigeminal nerve

• Deleted
  • - mesencephalic nucleus of trigeminal nerve SubClassOf nucleus of midbrain tegmentum
• Added
  • + mesencephalic nucleus of trigeminal nerve SubClassOf brainstem nucleus
  • + mesencephalic nucleus of trigeminal nerve SubClassOf midbrain nucleus

Changes for: obsolete globe

• Deleted
  • - globe SubClassOf ectoderm-derived structure
  • - globe SubClassOf multi-tissue structure
  • - globe SubClassOf part of some camera-type eye
  • - globe label globe
• Added
  • + obsolete globe deprecated true
  • + obsolete globe label obsolete globe
  • + obsolete globe term replaced by UBERON:0010230

Changes for: lumbar sympathetic nerve trunk

• Added
  • + lumbar sympathetic nerve trunk database cross reference FMA:6263
  • + lumbar sympathetic nerve trunk database cross reference http://www.snomedbrowser.com/Codes/Details/280534006
  • + lumbar sympathetic nerve trunk has exact synonym lumbar sympathetic trunk { database cross reference=FMA:6263 }

Changes for: nucleus of posterior commissure

• Deleted
  • - nucleus of posterior commissure SubClassOf nucleus of midbrain tegmentum
• Added
  • + nucleus of posterior commissure SubClassOf brainstem nucleus
  • + nucleus of posterior commissure SubClassOf midbrain nucleus

Changes for: rostral interstitial nucleus of medial longitudinal fasciculus

• Added
  • + rostral interstitial nucleus of medial longitudinal fasciculus SubClassOf brainstem nucleus
  • + rostral interstitial nucleus of medial longitudinal fasciculus SubClassOf midbrain nucleus

Changes for: trochlear nucleus

• Deleted
  • - trochlear nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + trochlear nucleus SubClassOf brainstem nucleus
  • + trochlear nucleus SubClassOf midbrain nucleus

Changes for: medial dorsal nucleus of thalamus

• Deleted
  • - medial dorsal nucleus of thalamus has exact synonym dorsomedial nuclear group { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym dorsomedial nucleus { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym medial dorsal nucleus { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym medial nuclear group { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym medial thalamic nuclei { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym medial thalamic nucleus { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym mediodorsal nucleus { database cross reference=FMA:62156 }
  • - medial dorsal nucleus of thalamus has exact synonym nucleus medialis dorsalis { database cross reference=NIFSTD:birnlex_1543 }
• Added
  • + medial dorsal nucleus of thalamus has broad synonym dorsomedial nuclear group { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym dorsomedial nucleus { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym medial dorsal nucleus { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym medial nuclear group { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym medial thalamic nuclei { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym medial thalamic nucleus { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym mediodorsal nucleus { database cross reference=FMA:62156 }
  • + medial dorsal nucleus of thalamus has broad synonym nucleus medialis dorsalis { database cross reference=NIFSTD:birnlex_1543 }

Changes for: anterior median oculomotor nucleus

• Deleted
  • - anterior median oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + anterior median oculomotor nucleus SubClassOf brainstem nucleus
  • + anterior median oculomotor nucleus SubClassOf midbrain nucleus

Changes for: olivary pretectal nucleus

• Deleted
  • - olivary pretectal nucleus has exact synonym anterior pretectal nucleus { database cross reference=FMA:72405 }
  • - olivary pretectal nucleus has exact synonym nucleus pretectalis anterior { database cross reference=FMA:72405 , database cross reference=FMA:TA , has synonym type=latin term }
• Added
  • + olivary pretectal nucleus has related synonym anterior pretectal nucleus { database cross reference=FMA:72405 }
  • + olivary pretectal nucleus has related synonym nucleus pretectalis anterior { database cross reference=FMA:72405 , database cross reference=FMA:TA , has synonym type=latin term }

Changes for: linear nucleus

• Deleted
  • - linear nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + linear nucleus SubClassOf brainstem nucleus
  • + linear nucleus SubClassOf midbrain nucleus

Changes for: interstitial nucleus of Cajal

• Deleted
  • - interstitial nucleus of Cajal SubClassOf nucleus of midbrain tegmentum
• Added
  • + interstitial nucleus of Cajal SubClassOf brainstem nucleus
  • + interstitial nucleus of Cajal SubClassOf midbrain nucleus

Changes for: deltoid

• Added
  • + deltoid SubClassOf scapular muscle

Changes for: infraspinatus muscle

• Added
  • + infraspinatus muscle SubClassOf scapular muscle

Changes for: triceps brachii

• Deleted
  • - triceps brachii SubClassOf muscle organ
• Added
  • + triceps brachii SubClassOf scapular muscle

Changes for: cranial suture

• Added
  • + cranial suture SubClassOf fibrous joint

Changes for: central amygdaloid nucleus

• Added
  • + central amygdaloid nucleus has related synonym central amygdala

Changes for: lateral amygdaloid nucleus

• Added
  • + lateral amygdaloid nucleus has related synonym lateral amygdala

Changes for: medial amygdaloid nucleus

• Added
  • + medial amygdaloid nucleus has related synonym medial amygdala

Changes for: cortical amygdaloid nucleus

• Added
  • + cortical amygdaloid nucleus has related synonym cortical amygdala

Changes for: ventral oculomotor nucleus

• Deleted
  • - ventral oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + ventral oculomotor nucleus SubClassOf brainstem nucleus
  • + ventral oculomotor nucleus SubClassOf midbrain nucleus

Changes for: caudal central oculomotor nucleus

• Deleted
  • - caudal central oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + caudal central oculomotor nucleus SubClassOf brainstem nucleus
  • + caudal central oculomotor nucleus SubClassOf midbrain nucleus

Changes for: bladder organ

• Deleted
  • - bladder organ has exact synonym bladder { database cross reference=BTO:0000123 }
• Added
  • + bladder organ SubClassOf sac
  • + bladder organ has narrow synonym bladder { database cross reference=BTO:0000123 }

Changes for: dorsal oculomotor nucleus

• Deleted
  • - dorsal oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + dorsal oculomotor nucleus SubClassOf brainstem nucleus
  • + dorsal oculomotor nucleus SubClassOf midbrain nucleus

Changes for: central oculomotor nucleus

• Deleted
  • - central oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + central oculomotor nucleus SubClassOf brainstem nucleus
  • + central oculomotor nucleus SubClassOf midbrain nucleus

Changes for: medial oculomotor nucleus

• Deleted
  • - medial oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + medial oculomotor nucleus SubClassOf brainstem nucleus
  • + medial oculomotor nucleus SubClassOf midbrain nucleus

Changes for: intermediate oculomotor nucleus

• Deleted
  • - intermediate oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + intermediate oculomotor nucleus SubClassOf brainstem nucleus
  • + intermediate oculomotor nucleus SubClassOf midbrain nucleus

Changes for: lateral dorsal nucleus

• Added
  • + lateral dorsal nucleus has exact synonym dorsal thalamus, lateral group { database cross reference=UBERON:cjm }

Changes for: medial superior olivary nucleus

• Added
  • + medial superior olivary nucleus has exact synonym superior olive medial part

Changes for: ventral nuclear group

• Added
  • + ventral nuclear group has exact synonym dorsal thalamus, ventral group { database cross reference=UBERON:cjm }

Changes for: lateral superior olivary nucleus

• Added
  • + lateral superior olivary nucleus has exact synonym superior olive lateral part

Changes for: ventral pallidum

• Added
  • + ventral pallidum has exact synonym globus pallidus ventral part { database cross reference=UBERON:cjm }

Changes for: pancreatic acinus

• Deleted
  • - pancreatic acinus editor note This class was created automatically from a combination of ontologies

Changes for: wall of urinary bladder

• Deleted
  • - wall of urinary bladder definition An anatomical wall that is part of a urinary bladder [Automatically generated definition]. { database cross reference=OBOL:automatic }
  • - wall of urinary bladder editor note This class was created automatically from a combination of ontologies
• Added
  • + wall of urinary bladder definition An anatomical wall that lines the insider of a urinary bladder. { database cross reference=UBERON:cjm }

Changes for: right atrium endocardium

• Deleted
  • - right atrium endocardium definition An endocardium that is part of a right atrium. { database cross reference=OBOL:automatic }
• Added
  • + right atrium endocardium definition Endocardium that is part of the right atrium. { database cross reference=UBERON:cjm }

Changes for: facial suture

• Deleted
  • - facial suture EquivalentTo craniofacial suture and ObjectMinCardinality( connects facial bone ) and ObjectMaxCardinality( connects facial bone )
• Added
  • + facial suture EquivalentTo craniofacial suture and ObjectMinCardinality( connects facial bone )
  • + facial suture SubClassOf ObjectMinCardinality( connects facial bone )
  • + facial suture SubClassOf part of some facial skeleton

Changes for: craniofacial suture

• Deleted
  • - craniofacial suture SubClassOf fibrous joint
• Added
  • + craniofacial suture EquivalentTo fibrous joint and ObjectMinCardinality( connects head bone )
  • + craniofacial suture SubClassOf ObjectMinCardinality( connects head bone )

Changes for: latissimus dorsi muscle

• Added
  • + latissimus dorsi muscle SubClassOf scapular muscle

Changes for: serratus ventralis

• Added
  • + serratus ventralis SubClassOf scapular muscle

Changes for: laterodorsal tegmental nucleus

• Deleted
  • - laterodorsal tegmental nucleus SubClassOf hindbrain nucleus
  • - laterodorsal tegmental nucleus SubClassOf part of some pons
• Added
  • + laterodorsal tegmental nucleus SubClassOf has part some part of some midbrain tegmentum
  • + laterodorsal tegmental nucleus SubClassOf has part some part of some pons
  • + laterodorsal tegmental nucleus SubClassOf nucleus of midbrain tegmentum
  • + laterodorsal tegmental nucleus SubClassOf part of some brainstem
  • + laterodorsal tegmental nucleus SubClassOf structure with developmental contribution from neural crest

Changes for: synchondrosis

• Added
  • + synchondrosis EquivalentTo fibrous joint and composed primarily of some hyaline cartilage tissue
  • + synchondrosis SubClassOf composed primarily of some hyaline cartilage tissue

Changes for: cartilaginous joint

• Added
  • + cartilaginous joint EquivalentTo nonsynovial joint and composed primarily of some cartilage tissue
  • + cartilaginous joint SubClassOf composed primarily of some cartilage tissue

Changes for: spinotrapezius muscle

• Added
  • + spinotrapezius muscle SubClassOf scapular muscle

Changes for: parvocellular oculomotor nucleus

• Deleted
  • - parvocellular oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + parvocellular oculomotor nucleus SubClassOf brainstem nucleus
  • + parvocellular oculomotor nucleus SubClassOf midbrain nucleus

Changes for: peripeduncular nucleus

• Added
  • + peripeduncular nucleus SubClassOf brainstem nucleus
  • + peripeduncular nucleus SubClassOf midbrain nucleus

Changes for: interpeduncular nucleus

• Deleted
  • - interpeduncular nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + interpeduncular nucleus SubClassOf brainstem nucleus
  • + interpeduncular nucleus SubClassOf midbrain nucleus
  • + interpeduncular nucleus database cross reference http://www.snomedbrowser.com/Codes/Details/369240002
  • + interpeduncular nucleus has exact synonym interpeduncular nuclei { has synonym type=plural term }
  • + interpeduncular nucleus has exact synonym interpeduncular nucleus of midbrain

Changes for: dorsal tegmental nucleus

• Deleted
  • - dorsal tegmental nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + dorsal tegmental nucleus SubClassOf brainstem nucleus
  • + dorsal tegmental nucleus SubClassOf midbrain nucleus

Changes for: nervous system

• Deleted
  • - nervous system has related synonym Nervensystem { database cross reference=BTO:0001484 }
• Added
  • + nervous system has exact synonym neurological system { database cross reference=GO:0050877 }

Changes for: reticulotegmental nucleus

• Deleted
  • - reticulotegmental nucleus has related synonym Tegmental reticular nucleus { database cross reference=BAMS:TRN }
• Added
  • + reticulotegmental nucleus has related synonym tegmental reticular nucleus { database cross reference=BAMS:TRN }

Changes for: teres muscle

• Added
  • + teres muscle SubClassOf attaches to some scapula
  • + teres muscle SubClassOf scapular muscle

Changes for: liver

• Added
  • + liver SubClassOf has part some liver lobule
  • + liver SubClassOf produces some bile
  • + liver comment Function notes: secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO].

Changes for: dorsal lateral geniculate nucleus

• Deleted
  • - dorsal lateral geniculate nucleus has related synonym lateral geniculate nucleus, dorsal part { database cross reference=NeuroNames:353 }
• Added
  • + dorsal lateral geniculate nucleus has exact synonym lateral geniculate nucleus, dorsal part { database cross reference=NeuroNames:353 }

Changes for: ventral tegmental nucleus

• Deleted
  • - ventral tegmental nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + ventral tegmental nucleus SubClassOf brainstem nucleus
  • + ventral tegmental nucleus SubClassOf midbrain nucleus

Changes for: dorsolateral oculomotor nucleus

• Deleted
  • - dorsolateral oculomotor nucleus SubClassOf nucleus of midbrain tegmentum
• Added
  • + dorsolateral oculomotor nucleus SubClassOf brainstem nucleus
  • + dorsolateral oculomotor nucleus SubClassOf midbrain nucleus

Changes for: supraspinatus muscle

• Added
  • + supraspinatus muscle SubClassOf scapular muscle

Changes for: lumen of central canal of spinal cord

• Added
  • + lumen of central canal of spinal cord SubClassOf transformation of some neural tube lumen

Changes for: layer of lateral geniculate body

• Deleted
  • - layer of lateral geniculate body SubClassOf ectoderm-derived structure
  • - layer of lateral geniculate body SubClassOf organ part
  • - layer of lateral geniculate body database cross reference FMA:76988
• Added
  • + layer of lateral geniculate body EquivalentTo nervous system cell part layer and part of some lateral geniculate body
  • + layer of lateral geniculate body SubClassOf central nervous system cell part cluster
  • + layer of lateral geniculate body SubClassOf nervous system cell part layer

Changes for: mammary ridge

• Deleted
  • - mammary ridge development notes The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. After initial development of the milk lines they go into remission.
• Added
  • + mammary ridge development notes The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. After initial development of the milk lines they go into remission.
  • + mammary ridge development notes in mouse, mammary gland development begins shortly after mid-gestation (about E10.5); epidermal cells within the milk line become columnar and multilayered, defining a ridge that protrudes above and below the plane of the single-layered primitive epidermis or periderm; by E11.5, five pairs of lens-shaped placodes form along the mammary line at the site of each future nipple.[MP]

Changes for: accessory olfactory bulb

• Added
  • + accessory olfactory bulb has exact synonym accessory (vomeronasal) bulb

Changes for: vernix caseosa

• Added
  • + vernix caseosa SubClassOf develops from some periderm

Changes for: ventral nucleus of posterior commissure

• Deleted
  • - ventral nucleus of posterior commissure SubClassOf nucleus of midbrain tegmentum
• Added
  • + ventral nucleus of posterior commissure SubClassOf brainstem nucleus
  • + ventral nucleus of posterior commissure SubClassOf midbrain nucleus

Changes for: thyroid gland

• Deleted
  • - thyroid gland SubClassOf develops from some thyroid diverticulum
• Added
  • + thyroid gland SubClassOf transformation of some thyroid diverticulum

Changes for: tetrapod frontal bone

• Added
  • + tetrapod frontal bone has narrow synonym frontal bone { database cross reference=FMA:52734 , database cross reference=MA:0001466 , has synonym type=preferred term when talking about an instance of this class in Homo sapiens }

Changes for: mesoderm blood island

• Added
  • + mesoderm blood island SubClassOf hemopoietic tissue

Changes for: thyroid diverticulum

• Deleted
  • - thyroid diverticulum SubClassOf develops from some thyroid primordium
• Added
  • + thyroid diverticulum SubClassOf transformation of some thyroid primordium

Changes for: central gray substance of midbrain

• Deleted
  • - central gray substance of midbrain SubClassOf nucleus of midbrain tegmentum
• Added
  • + central gray substance of midbrain SubClassOf brainstem nucleus
  • + central gray substance of midbrain SubClassOf midbrain nucleus

Changes for: periderm

• Added
  • + periderm comment Taxon notes: In mice, the first non-basal layer formed at ~E9.5; it is a temporary structure composed of simple squamous epithelium that serves as the first barrier to the embryo’s physical environment, exists throughout the entire keratinocyte stratification process, and sheds off at ~E17, when it is replaced by corneocytes[MP]
  • + periderm has related synonym epitrichium { database cross reference=MP:0013530 }

Changes for: nucleus of midbrain reticular formation

• Deleted
  • - nucleus of midbrain reticular formation SubClassOf nucleus of midbrain tegmentum
• Added
  • + nucleus of midbrain reticular formation SubClassOf brainstem nucleus
  • + nucleus of midbrain reticular formation SubClassOf midbrain nucleus

Changes for: nucleus of midbrain tegmentum

• Deleted
  • - nucleus of midbrain tegmentum EquivalentTo neural nucleus and part of some midbrain tegmentum
  • - nucleus of midbrain tegmentum SubClassOf brainstem nucleus
  • - nucleus of midbrain tegmentum SubClassOf midbrain nucleus
  • - nucleus of midbrain tegmentum SubClassOf part of some midbrain tegmentum
  • - nucleus of midbrain tegmentum definition A nucleus of brain that is part of a midbrain tegmentum. { database cross reference=OBOL:automatic }
• Added
  • + nucleus of midbrain tegmentum EquivalentTo neural nucleus and has part some part of some midbrain tegmentum
  • + nucleus of midbrain tegmentum SubClassOf has part some part of some midbrain tegmentum
  • + nucleus of midbrain tegmentum SubClassOf neural nucleus
  • + nucleus of midbrain tegmentum definition A nucleus of brain that spans a midbrain tegmentum. { database cross reference=OBOL:automatic }
  • + nucleus of midbrain tegmentum has exact synonym tegmental nuclei { has synonym type=plural term }

Changes for: levator scapulae muscle

• Added
  • + levator scapulae muscle SubClassOf scapular muscle

Changes for: dorsal pallidum

• Added
  • + dorsal pallidum has exact synonym globus pallidus dorsal part { database cross reference=UBERON:cjm }

Changes for: thoracic ganglion

• Deleted
  • - thoracic ganglion editor note This class was created automatically from a combination of ontologies
  • - thoracic ganglion has exact synonym thoracic paravertebral ganglion
• Added
  • + thoracic ganglion EquivalentTo paravertebral ganglion and part of some thoracic sympathetic nerve trunk
  • + thoracic ganglion SubClassOf extends fibers into some thoracic splanchnic nerve
  • + thoracic ganglion SubClassOf part of some thoracic sympathetic nerve trunk
  • + thoracic ganglion has exact synonym thoracic paravertebral ganglion { database cross reference=MA:0001159 }

Changes for: superior reticular formation tegmentum

• Deleted
  • - superior reticular formation tegmentum SubClassOf nucleus of midbrain tegmentum
• Added
  • + superior reticular formation tegmentum SubClassOf brainstem nucleus
  • + superior reticular formation tegmentum SubClassOf midbrain nucleus

Changes for: rotator muscle of the vertebral column

• Deleted
  • - rotator muscle of the vertebral column SubClassOf attaches to some vertebra
  • - rotator muscle of the vertebral column editor note This class was created automatically from a combination of ontologies
  • - rotator muscle of the vertebral column has exact synonym rotator muscle { database cross reference=FMA:23081 }
• Added
  • + rotator muscle of the vertebral column EquivalentTo muscle organ and part of some dorsum and has muscle origin some transverse process of vertebra and has muscle insertion some neural spine
  • + rotator muscle of the vertebral column SubClassOf has muscle insertion some neural spine
  • + rotator muscle of the vertebral column SubClassOf has muscle origin some transverse process of vertebra
  • + rotator muscle of the vertebral column has broad synonym rotator muscle { database cross reference=FMA:23081 }

Changes for: medulla of organ

• Deleted
  • - medulla of organ definition Middle part of an organ (as opposed to the cortex)[WP].
• Added
  • + medulla of organ definition Middle part of an organ, surrounded by the cortex. { database cross reference=UBERON:cjm }

Changes for: hippocampal commissure

• Deleted
  • - hippocampal commissure editor note This class was created automatically from a combination of ontologies

Changes for: pharyngeal branch of vagus nerve

• Deleted
  • - pharyngeal branch of vagus nerve SubClassOf part of some vagus nerve
  • - pharyngeal branch of vagus nerve editor note This class was created automatically from a combination of ontologies
  • - pharyngeal branch of vagus nerve has exact synonym pharyngeal branch
  • - pharyngeal branch of vagus nerve has exact synonym pharyngeal branch of inferior vagal ganglion
  • - pharyngeal branch of vagus nerve has exact synonym pharyngeal branch of vagus nerve
  • - pharyngeal branch of vagus nerve has exact synonym ramus pharyngealis nervi vagalis
  • - pharyngeal branch of vagus nerve has exact synonym tenth cranial nerve pharyngeal branch
  • - pharyngeal branch of vagus nerve has exact synonym vagal pharyngeal branch
  • - pharyngeal branch of vagus nerve has exact synonym vagus nerve pharyngeal branch
• Added
  • + pharyngeal branch of vagus nerve SubClassOf branching part of some vagus nerve
  • + pharyngeal branch of vagus nerve SubClassOf extends fibers into some inferior vagus X ganglion
  • + pharyngeal branch of vagus nerve has exact synonym pharyngeal branch of inferior vagal ganglion { database cross reference=FMA:6234 }
  • + pharyngeal branch of vagus nerve has exact synonym pharyngeal branch { database cross reference=FMA:6234 }
  • + pharyngeal branch of vagus nerve has exact synonym ramus pharyngealis nervi vagalis { database cross reference=FMA:6234 }
  • + pharyngeal branch of vagus nerve has exact synonym ramus pharyngeus { database cross reference=FMA:TA }
  • + pharyngeal branch of vagus nerve has exact synonym tenth cranial nerve pharyngeal branch { database cross reference=FMA:6234 }
  • + pharyngeal branch of vagus nerve has exact synonym vagal pharyngeal branch { database cross reference=FMA:6234 }
  • + pharyngeal branch of vagus nerve has exact synonym vagus nerve pharyngeal branch { database cross reference=FMA:6234 }

Changes for: obsolete embryonic segment

• Deleted
  • - embryonic segment SubClassOf embryonic structure
  • - embryonic segment SubClassOf organismal segment
  • - embryonic segment SubClassOf part of some embryo
  • - embryonic segment database cross reference FBbt:00000154
  • - embryonic segment database cross reference MAT:0000244
  • - embryonic segment database cross reference MIAA:0000244
  • - embryonic segment editor note This class was created automatically from a combination of ontologies
  • - embryonic segment label embryonic segment
• Added
  • + obsolete embryonic segment consider FBbt:00000154
  • + obsolete embryonic segment consider MAT:0000244
  • + obsolete embryonic segment consider MIAA:0000244
  • + obsolete embryonic segment deprecated true
  • + obsolete embryonic segment label obsolete embryonic segment

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 0

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