Improved alignment with NIFSTD, better representation of lymph sacs, and the addition of Thagomizer

Summary

New terms

• thagomizer - contributed by balhoff
• interoceptive system fixes 1385
• piriform aperture. See https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2396

Obsoletions

• Obsoleted Shreckstoff.
• Obsoleted mitochondrial cloud. See https://github.com/obophenotype/uberon/issues/1360, Fixes https://github.com/obophenotype/uberon/issues/1365
• obsoleting nematocyst; should be added to GO See 1360

Taxon Constraints

• pGCI for seminiferous tubules, fixes 1381
• weaked TC for gyrus, fixes 1378
• Relaxing TC on placenta to include yolk-type placenta of marsupials, Fixes 1376
• removing dev relationship between liver parenchyma and bile duct. Fixes 2614
• Removed TC excluding stomach from platypus, fixes 1377

Neuro

Thanks to tgbugs

• Fixed relationships to obsolete brain regional part for EG. https://github.com/obophenotype/uberon/issues/1360
• dorsal longitudinal fasciculus subclasses->parts, 1362
• medial lemniscus fixes 1362
• Improved sourced def to cerebrocerebellum. Fixes 1368
• NT: zona pectinata of basilar membrane of cochlea * Fixes 1357

lymph sacs

• multiple improvements to representation of lymph sacs; see 1383

Other

• remove references to go multi-organism signaling, fixes 1384
• Fixed syn scope for multicellular organism. Fixes 1361. Added provenance for syns
• NT: interdigital space. Tidies editor notes

Ontology Diff Report

Original Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2017-09-09/uberon.owl

New Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2017-10-28/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 11

New Class : zone of basilar membrane of cochlea

• zone of basilar membrane of cochlea EquivalentTo acellular membrane and part of some basilar membrane of cochlea
• zone of basilar membrane of cochlea SubClassOf ectoderm-derived structure
• zone of basilar membrane of cochlea SubClassOf acellular membrane
• zone of basilar membrane of cochlea label zone of basilar membrane of cochlea
• zone of basilar membrane of cochlea SubClassOf structure with developmental contribution from neural crest
• zone of basilar membrane of cochlea id UBERON:0036250
• zone of basilar membrane of cochlea has obo namespace uberon
• zone of basilar membrane of cochlea SubClassOf part of some basilar membrane of cochlea
• zone of basilar membrane of cochlea has related synonym zone of organ of corti
• zone of basilar membrane of cochlea database cross reference http://www.snomedbrowser.com/Codes/Details/361065006

New Class : interdigital space

• interdigital space SubClassOf ObjectMinCardinality( adjacent to digit ) and ObjectMaxCardinality( adjacent to digit )
• interdigital space definition The space between the digits of the hand or foot. { database cross reference=NCIT:C106201 }
• interdigital space has obo namespace uberon
• interdigital space database cross reference NCIT:C106201
• interdigital space SubClassOf anatomical space
• interdigital space label interdigital space
• interdigital space id UBERON:0036252

New Class : orifice of skull

• orifice of skull SubClassOf orifice
• orifice of skull database cross reference FMA:53133
• orifice of skull label orifice of skull
• orifice of skull has exact synonym cranial orifice { database cross reference=FMA:53133 }
• orifice of skull EquivalentTo orifice and part of some skull
• orifice of skull has obo namespace uberon
• orifice of skull SubClassOf part of some skull
• orifice of skull has exact synonym skull orifice { database cross reference=FMA:53133 }
• orifice of skull id UBERON:0036253

New Class : piriform aperture

• piriform aperture database cross reference http://en.wikipedia.org/wiki/Anterior_nasal_aperture
• piriform aperture label piriform aperture
• piriform aperture SubClassOf orifice of skull
• piriform aperture SubClassOf part of some nasal skeleton
• piriform aperture id UBERON:0036254
• piriform aperture has related synonym piriform aperture { database cross reference=http://en.wikipedia.org/wiki/Anterior_nasal_aperture }
• piriform aperture SubClassOf neural crest-derived structure
• piriform aperture definition A pear-shaped bony inlet comprising the most anterior and narrowest bony portion of the nasal airway. { database cross reference=http://en.wikipedia.org/wiki/Anterior_nasal_aperture , database cross reference=http://www.ncbi.nlm.nih.gov/pubmed/17082934 , database cross reference=MGI:anna }
• piriform aperture has related synonym pyriform aperture { database cross reference=http://en.wikipedia.org/wiki/Anterior_nasal_aperture }
• piriform aperture has exact synonym apertura piriformis { database cross reference=FMA:TA , has synonym type=latin term }
• piriform aperture has related synonym apertura piriformis { database cross reference=http://en.wikipedia.org/wiki/Anterior_nasal_aperture }
• piriform aperture has obo namespace uberon
• piriform aperture database cross reference FMA:53137

New Class : interoceptive system

• interoceptive system has obo namespace uberon
• interoceptive system definition The system that is responsible for sensing the internal state of the body. { database cross reference=http://en.wikipedia.org/wiki/Interoception , database cross reference=https://github.com/obophenotype/uberon/issues/1385 }
• interoceptive system label interoceptive system
• interoceptive system database cross reference http://en.wikipedia.org/wiki/Interoception
• interoceptive system SubClassOf obsolete dendrite
• interoceptive system id UBERON:0036255

New Class : iliac lymph sac

• iliac lymph sac has obo namespace uberon
• iliac lymph sac id UBERON:0036256
• iliac lymph sac SubClassOf embryonic lymph sac { source=NCIT }
• iliac lymph sac database cross reference NCIT:C34191
• iliac lymph sac label iliac lymph sac
• iliac lymph sac definition An embryonic lymph sac that forms near the junction of the iliac veins with the posterior cardinal veins. { database cross reference=https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system , database cross reference=https://github.com/obophenotype/uberon/issues/1383 }

New Class : cardial lymph propulsor

• cardial lymph propulsor label cardial lymph propulsor
• cardial lymph propulsor SubClassOf accessory circulatory organ
• cardial lymph propulsor definition A lymphatic propulsor that lies tightly against the truncus arteriosus, the major outflow tract of the amphibian heart. { database cross reference=http://jap.physiology.org/content/115/3/297 , database cross reference=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1233883/ }
• cardial lymph propulsor has obo namespace uberon
• cardial lymph propulsor id UBERON:0036259

New Class : embryonic cisterna chyli

• embryonic cisterna chyli has obo namespace uberon
• embryonic cisterna chyli label embryonic cisterna chyli
• embryonic cisterna chyli has related synonym future upper portion of the cisterna chyli
• embryonic cisterna chyli definition An embryonic lymph sac that is dorsal to the retroperitoneal lymph sac, at the level of the adrenal glands. { database cross reference=https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system , database cross reference=https://github.com/obophenotype/uberon/issues/1383 }
• embryonic cisterna chyli database cross reference EHDAA2:0000253
• embryonic cisterna chyli SubClassOf embryonic lymph sac { source=cjm }
• embryonic cisterna chyli id UBERON:0036260

New Class : accessory lymph sac

• accessory lymph sac definition An extracoelomic lateral abdominal space that accumulates body fluid. { database cross reference=https://www.ncbi.nlm.nih.gov/pubmed/3958676 }
• accessory lymph sac has obo namespace uberon
• accessory lymph sac present in taxon http://purl.obolibrary.org/obo/NCBITaxon_65997
• accessory lymph sac SubClassOf part of some abdomen
• accessory lymph sac SubClassOf epithelial sac
• accessory lymph sac label accessory lymph sac
• accessory lymph sac id UBERON:0036261

New Class : zona pectinata of basilar membrane of cochlea

• zona pectinata of basilar membrane of cochlea has exact synonym pectinate zone of organ of corti
• zona pectinata of basilar membrane of cochlea SubClassOf zone of basilar membrane of cochlea
• zona pectinata of basilar membrane of cochlea has broad synonym zona pectinata
• zona pectinata of basilar membrane of cochlea has broad synonym pectinate zone
• zona pectinata of basilar membrane of cochlea id UBERON:0036249
• zona pectinata of basilar membrane of cochlea has obo namespace uberon
• zona pectinata of basilar membrane of cochlea label zona pectinata of basilar membrane of cochlea
• zona pectinata of basilar membrane of cochlea definition The acellular membrane that forms the outer two thirds of the basilar membrane of the conchlea. { database cross reference=http://medical-dictionary.thefreedictionary.com/zona+pectinata , database cross reference=https://github.com/obophenotype/uberon/issues/1357 }
• zona pectinata of basilar membrane of cochlea has exact synonym pectinate zone of basilar membrane
• zona pectinata of basilar membrane of cochlea database cross reference FMA:75710
• zona pectinata of basilar membrane of cochlea database cross reference http://linkedlifedata.com/resource/umls/id/C1184863
• zona pectinata of basilar membrane of cochlea database cross reference http://uri.neuinfo.org/nif/nifstd/birnlex_2529
• zona pectinata of basilar membrane of cochlea database cross reference http://www.snomedbrowser.com/Codes/Details/368962003

New Class : thagomizer

• thagomizer label thagomizer
• thagomizer definition The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators. { database cross reference=https://en.wikipedia.org/wiki/Thagomizer }
• thagomizer comment The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic ‘The Far Side’, and thereafter became gradually adopted as an informal term within scientific circles, research, and education. { database cross reference=https://en.wikipedia.org/wiki/Thagomizer }
• thagomizer SubClassOf part of some post-anal tail
• thagomizer has broad synonym tail spikes
• thagomizer SubClassOf morphological feature

Changed Class objects: 43

Changes for: eminentia granularis

• Deleted
  • - eminentia granularis SubClassOf obsolete regional part of cerebellum
• Added
  • + eminentia granularis SubClassOf part of some cerebellum
  • + eminentia granularis SubClassOf regional part of brain
  • + eminentia granularis SubClassOf structure with developmental contribution from neural crest

Changes for: obsolete Schreckstoff

• Deleted
  • - Schreckstoff SubClassOf obsolete cell part
  • - Schreckstoff label Schreckstoff
• Added
  • + obsolete Schreckstoff deprecated true
  • + obsolete Schreckstoff label obsolete Schreckstoff
  • + obsolete Schreckstoff term replaced by http://purl.obolibrary.org/obo/CHEBI_133299

Changes for: round window of inner ear

• Deleted
  • - round window of inner ear SubClassOf orifice
• Added
  • + round window of inner ear SubClassOf orifice of skull

Changes for: oval window

• Deleted
  • - oval window SubClassOf orifice
• Added
  • + oval window SubClassOf orifice of skull

Changes for: posterior nasal aperture

• Added
  • + posterior nasal aperture SubClassOf orifice of skull

Changes for: medial lemniscus of pons

• Deleted
  • - medial lemniscus of pons EquivalentTo medial lemniscus and part of some pons
  • - medial lemniscus of pons SubClassOf medial lemniscus
  • - medial lemniscus of pons SubClassOf part of some pons
• Added
  • + medial lemniscus of pons SubClassOf nervous system lemniscus { source=FMA }
  • + medial lemniscus of pons SubClassOf part of some medial lemniscus { source=FMA , source=NIFSTD }
  • + medial lemniscus of pons SubClassOf part of some pontine tegmentum { source=FMA }
  • + medial lemniscus of pons database cross reference http://www.snomedbrowser.com/Codes/Details/361572002

Changes for: dorsal trigeminal tract

• Deleted
  • - dorsal trigeminal tract SubClassOf part of some pontine tegmentum { source=FMA }
• Added
  • + dorsal trigeminal tract SubClassOf part of some pontine tegmentum { source=FMA , source=NIFSTD }

Changes for: dorsal longitudinal fasciculus of pons

• Deleted
  • - dorsal longitudinal fasciculus of pons EquivalentTo dorsal longitudinal fasciculus and part of some pons
  • - dorsal longitudinal fasciculus of pons SubClassOf dorsal longitudinal fasciculus
• Added
  • + dorsal longitudinal fasciculus of pons SubClassOf fasciculus of brain { source=FMA }
  • + dorsal longitudinal fasciculus of pons SubClassOf part of some dorsal longitudinal fasciculus { source=NIFSTD }

Changes for: pleural effusion

• Deleted
  • - pleural effusion comment Editor noyes: cede to MPATH? Note the ncit class is under finding.
• Added
  • + pleural effusion editor note cede to MPATH? Note the ncit class is under finding.

Changes for: gyrus

• Added
  • + gyrus dubious for taxon http://purl.obolibrary.org/obo/NCBITaxon_10088

Changes for: zona arcuata of basilar membrane of cochlea

• Deleted
  • - zona arcuata of basilar membrane of cochlea SubClassOf acellular membrane
  • - zona arcuata of basilar membrane of cochlea SubClassOf ectoderm-derived structure
  • - zona arcuata of basilar membrane of cochlea SubClassOf part of some basilar membrane of cochlea
  • - zona arcuata of basilar membrane of cochlea SubClassOf structure with developmental contribution from neural crest
  • - zona arcuata of basilar membrane of cochlea database cross reference http://linkedlifedata.com/resource/umls/id/C1184863
  • - zona arcuata of basilar membrane of cochlea database cross reference http://uri.neuinfo.org/nif/nifstd/birnlex_2529
  • - zona arcuata of basilar membrane of cochlea definition The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti. { database cross reference=http://en.wikipedia.org/wiki/Inner_tunnel }
• Added
  • + zona arcuata of basilar membrane of cochlea SubClassOf zone of basilar membrane of cochlea
  • + zona arcuata of basilar membrane of cochlea database cross reference http://www.snomedbrowser.com/Codes/Details/368961005
  • + zona arcuata of basilar membrane of cochlea definition The inner part of the basilar membrane of the cochlea that supports the spiral organ of Corti. { database cross reference=http://en.wikipedia.org/wiki/Inner_tunnel , database cross reference=https://github.com/obophenotype/uberon/issues/1357 }
  • + zona arcuata of basilar membrane of cochlea has exact synonym arcuate zone of basilar membrane
  • + zona arcuata of basilar membrane of cochlea has exact synonym arcuate zone of organ of corti

Changes for: seminiferous tubule of testis

• Deleted
  • - seminiferous tubule of testis SubClassOf channels into some rete testis
  • - seminiferous tubule of testis definition the tubules in the testes where spermatogenesis occurs { database cross reference=ISBN:0-683-40008-8 , database cross reference=MGI:csmith , database cross reference=MP:0002216 }
• Added
  • + seminiferous tubule of testis definition The tubules in the testes where spermatogenesis occurs. { database cross reference=https://github.com/obophenotype/uberon/issues/1381 , database cross reference=ISBN:0-683-40008-8 , database cross reference=MGI:csmith , database cross reference=MP:0002216 }

Changes for: lymph node

• Added
  • + lymph node SubClassOf develops from some embryonic lymph sac

Changes for: sartorius muscle

• Deleted
  • - sartorius muscle comment . We do NOT group this AAO class here at this stage until further evidence of shared attachments
• Added
  • + sartorius muscle editor note We do NOT group this AAO class here at this stage until further evidence of shared attachments

Changes for: dorsal longitudinal fasciculus of medulla

• Deleted
  • - dorsal longitudinal fasciculus of medulla EquivalentTo dorsal longitudinal fasciculus and part of some medulla oblongata
  • - dorsal longitudinal fasciculus of medulla SubClassOf dorsal longitudinal fasciculus
• Added
  • + dorsal longitudinal fasciculus of medulla SubClassOf fasciculus of brain { source=FMA }

Changes for: medial lemniscus of midbrain

• Deleted
  • - medial lemniscus of midbrain EquivalentTo medial lemniscus and part of some midbrain
  • - medial lemniscus of midbrain SubClassOf medial lemniscus
  • - medial lemniscus of midbrain SubClassOf part of some midbrain tegmentum
• Added
  • + medial lemniscus of midbrain SubClassOf nervous system lemniscus { source=FMA }
  • + medial lemniscus of midbrain SubClassOf part of some cerebral peduncle { source=NIFSTD }
  • + medial lemniscus of midbrain SubClassOf part of some medial lemniscus { source=NIFSTD }
  • + medial lemniscus of midbrain SubClassOf part of some midbrain tegmentum { source=FMA }
  • + medial lemniscus of midbrain database cross reference http://www.snomedbrowser.com/Codes/Details/361568001

Changes for: cerebrocerebellum

• Deleted
  • - cerebrocerebellum definition A phylogenetic subdivision of the cerenellum, the newest part, which is involved in planning movement and evaluating sensory information for action. It receives input exclusively from the cerebral cortex (especially the parietal lobe) via the pontine nuclei (forming cortico-ponto-cerebellar pathways), and sends fibres mainly to the ventrolateral thalamus (in turn connected to motor areas of the premotor cortex and primary motor area of the cerebral cortex) and to the red nucleus (in turn connected to the inferior olivary nucleus, which links back to the cerebellar hemispheres). { database cross reference=Phylogenetic and functional divisions }
• Added
  • + cerebrocerebellum definition The part of the cerebellar cortex that receives input from the cerebral cortex via axons from the pontine relay nuclei. { database cross reference=https://www.ncbi.nlm.nih.gov/books/NBK11100/ }

Changes for: medial lemniscus of medulla

• Deleted
  • - medial lemniscus of medulla EquivalentTo medial lemniscus and part of some medulla oblongata
  • - medial lemniscus of medulla SubClassOf medial lemniscus
  • - medial lemniscus of medulla SubClassOf part of some medulla oblongata
• Added
  • + medial lemniscus of medulla SubClassOf nervous system lemniscus { source=FMA }
  • + medial lemniscus of medulla SubClassOf part of some medial lemniscus { source=NIFSTD }
  • + medial lemniscus of medulla SubClassOf part of some medulla oblongata { source=FMA , source=NIFSTD }

Changes for: liver parenchyma

• Deleted
  • - liver parenchyma SubClassOf develops from some hepatic duct { source=EHDAA2 }

Changes for: placenta

• Deleted
  • - placenta comment Marsupials possess only a rudimentary placenta, with reduced nutrient and oxygen exchanging capabilities.
• Added
  • + placenta comment Marsupials possess only a rudimentary yolk-type placenta, with reduced nutrient and oxygen exchanging capabilities.

Changes for: bile

• Added
  • + bile database cross reference ZFA:0005857

Changes for: multicellular organism

• Deleted
  • - multicellular organism has exact synonym organism
  • - multicellular organism has exact synonym whole organism
  • - multicellular organism has related synonym body
• Added
  • + multicellular organism has broad synonym organism { database cross reference=FBbt:00000001 , database cross reference=VHOG:0000671 , database cross reference=WBbt:0007833 }
  • + multicellular organism has related synonym body { database cross reference=http://uri.neuinfo.org/nif/nifstd/birnlex_18 , database cross reference=AEO:0000103 , database cross reference=FMA:256135 , database cross reference=NCIT:C13041 }
  • + multicellular organism has related synonym whole organism { database cross reference=FBbt:00000001 }

Changes for: nasal cavity

• Deleted
  • - nasal cavity editor note defne the boundaries of this cavity for a variety of species and check that parthood relations are not too strong.
• Added
  • + nasal cavity editor note define the boundaries of this cavity for a variety of species and check that parthood relations are not too strong.

Changes for: chin

• Deleted
  • - chin has related synonym chins { database cross reference=http://en.wikipedia.org/wiki/Chin }

Changes for: obsolete nematocyst

• Deleted
  • - nematocyst SubClassOf obsolete cnida
  • - nematocyst database cross reference BTO:0000918
  • - nematocyst label nematocyst
• Added
  • + obsolete nematocyst comment This should be added to GO
  • + obsolete nematocyst consider BTO:0000918
  • + obsolete nematocyst deprecated true
  • + obsolete nematocyst label obsolete nematocyst

Changes for: pennate muscle

• Deleted
  • - pennate muscle external ontology notes the FMA class does not denote a muscle organ. editor note: TODO add child classes { external ontology=FMA }
• Added
  • + pennate muscle editor note TODO add child classes
  • + pennate muscle external ontology notes the FMA class does not denote a muscle organ. { external ontology=FMA }

Changes for: sagulum nucleus

• Deleted
  • - sagulum nucleus definition A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of thenlateral lemniscus { database cross reference=NIFSTD:nlx_64080 }
• Added
  • + sagulum nucleus definition A collection of principally small and medium-sized cells in the midbrain tegmentum lying at the margin of the midbrain adjacent to the nuclei of the lateral lemniscus { database cross reference=NIFSTD:nlx_64080 }

Changes for: jugular lymph sac

• Deleted
  • - jugular lymph sac definition Lymphatic vessels develop from lymph sacs that arise from developing veins, which are derived from mesoderm. The first lymph sacs to appear are the paired jugular lymph sacs at the junction of the internal jugular and subclavian veins. { database cross reference=VHOG:0001000 }
  • - jugular lymph sac homology notes Lymph hearts are pulsatile organs, present in lower vertebrates, that function to propel lymph into the venous system. Although they are absent in mammals, the initial veno-lymphatic plexus that forms during mammalian jugular lymph sac development has been described as the vestigial homologue of the nascent stage of ancestral anterior lymph hearts.[well established][VHOG] { date retrieved=2012-09-17 , external class=VHOG:0001000 , ontology=VHOG , source=http://bgee.unil.ch/ , source=DOI:10.1016/j.ydbio.2010.01.002 Peyrot SM, Martin BL, Harland RM, Lymph heart musculature is under distinct developmental control from lymphatic endothelium. Developmental Biology (2010) }
• Added
  • + jugular lymph sac definition An embryonic lymph sac that forms at the junction of the future internal jugular/anterior cardinals and subclavian veins. { database cross reference=https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system , database cross reference=https://github.com/obophenotype/uberon/issues/1383 , database cross reference=VHOG:0001000 }

Changes for: lymph sac of lymph heart

• Deleted
  • - lymph sac label lymph sac
• Added
  • + lymph sac of lymph heart SubClassOf part of some lymph heart
  • + lymph sac of lymph heart definition An extensive dorsal subcutaneous sac that opens into a lymph heart. { database cross reference=https://github.com/obophenotype/uberon/issues/1383 , database cross reference=https://www.merriam-webster.com/dictionary/lymph%20sac }
  • + lymph sac of lymph heart label lymph sac of lymph heart

Changes for: embryonic lymph sac

• Deleted
  • - embryonic lymph sac definition A population of lymphatic endothelial cell precursors that will form the lymph vessels. { database cross reference=http://dx.doi.org/10.1152/japplphysiol.00201.2013 }
• Added
  • + embryonic lymph sac definition A population of lymphatic endothelial cell precursors that will form the lymph vessels. { database cross reference=http://dx.doi.org/10.1152/japplphysiol.00201.2013 , database cross reference=https://github.com/obophenotype/uberon/issues/1383 }

Changes for: retroperitoneal embryonic lymph sac

• Added
  • + retroperitoneal embryonic lymph sac definition An embryonic lymph sac that forms in the root of the mesentery on the posterior abdominal wall { database cross reference=https://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-128-development-of-the-lymphatic-system , database cross reference=https://github.com/obophenotype/uberon/issues/1383 }

Changes for: interdigital region

• Deleted
  • - interdigital region database cross reference NCIT:C106201
• Added
  • + interdigital region database cross reference XAO:0004316
  • + interdigital region definition Anatomical region connecting two digits. { database cross reference=UBERON:cjm }

Changes for: obsolete mitochondrial aggregate

• Deleted
  • - mitochondrial aggregate SubClassOf obsolete cell part
  • - mitochondrial aggregate label mitochondrial aggregate
• Added
  • + obsolete mitochondrial aggregate deprecated true
  • + obsolete mitochondrial aggregate label obsolete mitochondrial aggregate
  • + obsolete mitochondrial aggregate term replaced by GO:0032019

Changes for: hepatic duct

• Deleted
  • - hepatic duct external definition A duct that carries bile from the liver to the small intestine[ZFA]. { source=ZFA:0001100 }

Changes for: interoceptor

• Added
  • + interoceptor SubClassOf part of some interoceptive system

Changes for: upper part of cisterna chyli

• Deleted
  • - cisterna chyli label cisterna chyli
• Added
  • + upper part of cisterna chyli SubClassOf develops from some embryonic cisterna chyli
  • + upper part of cisterna chyli has exact synonym cisterna chyli { database cross reference=FMA:5835 }
  • + upper part of cisterna chyli label upper part of cisterna chyli
  • + upper part of cisterna chyli taxon notes In dogs, it is located to the left and often ventral to the aorta; in cats it is left and dorsal; in guinea pigs it runs to the left and drains into the left innominate vein

Changes for: non-neural ectoderm

• Deleted
  • - non-neural ectoderm comment Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998). Editor note: todo - epidermis? todo - track down EHDAA2 class in new release
• Added
  • + non-neural ectoderm comment Gene notes: One of the first genes to be expressed in nonneural ectoderm in amphioxus is BMP2/4 (Panopoulou et al. 1998). BMP2/4 homologues appear to have a very ancient role in distinguishing neural from nonneural ectoderm; in Drosophila as well as in amphioxus and vertebrates, BMP2/4 homologues are expressed in nonneural ectoderm and function in distinguishing neural from nonneural ectoderm (Francois & Bier, 1995 ; Sasai et al. 1995 ; Wilson & Hemmati-Brivanlou, 1995; Panopoulou et al. 1998). A change in level of BMP2/4 from very high in nonneural ectoderm to low in neural ectoderm appears to be a key factor in development of neural crest (Baker & Bronner-Fraser,1997a,1997b;Erickson&Reedy,1998;Marchantet al.1998 ;Selleck et al. 1998).
  • + non-neural ectoderm editor note todo - epidermis? todo - track down EHDAA2 class in new release

Changes for: periocular mesenchyme

• Added
  • + periocular mesenchyme SubClassOf has developmental contribution from some mesencephalic neural crest { evidence=PMID:3709965 }
  • + periocular mesenchyme SubClassOf structure with developmental contribution from neural crest

Changes for: accessory circulatory organ

• Added
  • + accessory circulatory organ definition A circulatory organ that is not responsible for primary circulation. { database cross reference=UBERON:cjm }

Changes for: lymph heart

• Added
  • + lymph heart taxon notes Caecilians posses a lymph heart at every segment boundary thus having up to 200 in number.

Changes for: dorsal longitudinal fasciculus of hypothalamus

• Deleted
  • - dorsal longitudinal fasciculus of hypothalamus EquivalentTo dorsal longitudinal fasciculus and part of some hypothalamus
  • - dorsal longitudinal fasciculus of hypothalamus SubClassOf dorsal longitudinal fasciculus
  • - dorsal longitudinal fasciculus of hypothalamus SubClassOf part of some lateral hypothalamic area
• Added
  • + dorsal longitudinal fasciculus of hypothalamus SubClassOf fasciculus of brain
  • + dorsal longitudinal fasciculus of hypothalamus SubClassOf part of some dorsal longitudinal fasciculus { source=NIFSTD }
  • + dorsal longitudinal fasciculus of hypothalamus SubClassOf part of some lateral hypothalamic area { source=FMA }
  • + dorsal longitudinal fasciculus of hypothalamus external ontology notes classified as tract in FMA { external ontology=FMA }

Changes for: dorsal longitudinal fasciculus of midbrain

• Deleted
  • - dorsal longitudinal fasciculus of midbrain EquivalentTo dorsal longitudinal fasciculus and part of some midbrain
  • - dorsal longitudinal fasciculus of midbrain SubClassOf dorsal longitudinal fasciculus
  • - dorsal longitudinal fasciculus of midbrain SubClassOf part of some midbrain tegmentum
• Added
  • + dorsal longitudinal fasciculus of midbrain SubClassOf fasciculus of brain { source=FMA }
  • + dorsal longitudinal fasciculus of midbrain SubClassOf part of some dorsal longitudinal fasciculus { source=NIFSTD }
  • + dorsal longitudinal fasciculus of midbrain SubClassOf part of some midbrain tegmentum { source=FMA }

Changes for: nervous system lemniscus

• Deleted
  • - nervous system lemniscus database cross reference FMA:76742

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 0

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