2015-02-14 release

Incremental release, with new skeletal, glandular, neuroanatomical and heart classes
2015-02-14 release image

Ontology Diff Report

  • Cardiovascular NT: left atrium endocardium. Fixes #637
  • Musculoskeletal
    • First pass at NT scapular muscle. Issue #640
    • NT: Intermaxillary Suture. [Mark Engelsted]. Fixes #642
    • Adding disjoints for joints, sutures and synchrondroses
  • Neuro
    • added various syns and xrefs for brain; prep for aligning with common mammalian nomenclature [Mihail Bota]
    • NT: {sacral,cervical} sympathetic nerve trunk.
    • NT: {medial,anterior} pretectal nucleus
  • Misc.
    • NT: pineal parenchyma
    • NT: gland lumen
    • Xrefs: Removed weird dbpedia derived uuescaping. fixes #639
    • Relations: switched some site-ofs to contains_process
    • Obsoleted ‘globe’, replaced by existing term for eyeball

Original Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2015-02-02/uberon.owl

New Ontology

  • IRI: http://purl.obolibrary.org/obo/uberon.owl
  • VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2015-02-14/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 9

New Class : intermaxillary suture

New Class : pineal parenchyma

New Class : scapular muscle

New Class : gland lumen

New Class : left atrium endocardium

New Class : cervical sympathetic nerve trunk

New Class : sacral sympathetic nerve trunk

New Class : anterior pretectal nucleus

New Class : medial pretectal nucleus

Changed Class objects: 90

Changes for: paranigral nucleus

Changes for: parabrachial pigmental nucleus

Changes for: pubococcygeus muscle

Changes for: lateral geniculate nucleus parvocellular layer

Changes for: endocardium of left auricle

Changes for: dorsomedial nucleus of hypothalamus

Changes for: pretectal region

Changes for: midbrain tegmentum

Changes for: red nucleus

Changes for: corneal endothelium

Changes for: nucleus of optic tract

Changes for: nucleus of diagonal band

Changes for: corneal epithelium

Changes for: mesencephalic nucleus of trigeminal nerve

Changes for: obsolete globe

Changes for: lumbar sympathetic nerve trunk

Changes for: nucleus of posterior commissure

Changes for: rostral interstitial nucleus of medial longitudinal fasciculus

Changes for: trochlear nucleus

Changes for: medial dorsal nucleus of thalamus

Changes for: anterior median oculomotor nucleus

Changes for: olivary pretectal nucleus

Changes for: linear nucleus

Changes for: interstitial nucleus of Cajal

Changes for: deltoid

Changes for: infraspinatus muscle

Changes for: triceps brachii

Changes for: cranial suture

Changes for: central amygdaloid nucleus

Changes for: lateral amygdaloid nucleus

Changes for: medial amygdaloid nucleus

Changes for: cortical amygdaloid nucleus

Changes for: ventral oculomotor nucleus

Changes for: caudal central oculomotor nucleus

Changes for: bladder organ

Changes for: dorsal oculomotor nucleus

Changes for: central oculomotor nucleus

Changes for: medial oculomotor nucleus

Changes for: intermediate oculomotor nucleus

Changes for: lateral dorsal nucleus

Changes for: medial superior olivary nucleus

Changes for: ventral nuclear group

Changes for: lateral superior olivary nucleus

Changes for: ventral pallidum

Changes for: pancreatic acinus

Changes for: wall of urinary bladder

Changes for: right atrium endocardium

Changes for: facial suture

Changes for: craniofacial suture

Changes for: latissimus dorsi muscle

Changes for: serratus ventralis

Changes for: laterodorsal tegmental nucleus

Changes for: synchondrosis

Changes for: cartilaginous joint

Changes for: spinotrapezius muscle

Changes for: parvocellular oculomotor nucleus

Changes for: peripeduncular nucleus

Changes for: interpeduncular nucleus

Changes for: dorsal tegmental nucleus

Changes for: nervous system

Changes for: reticulotegmental nucleus

Changes for: teres muscle

Changes for: liver

  • Added
    • + liver SubClassOf has part some liver lobule
    • + liver SubClassOf produces some bile
    • + liver comment Function notes: secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO].

Changes for: dorsal lateral geniculate nucleus

Changes for: ventral tegmental nucleus

Changes for: dorsolateral oculomotor nucleus

Changes for: supraspinatus muscle

Changes for: lumen of central canal of spinal cord

Changes for: layer of lateral geniculate body

Changes for: mammary ridge

  • Deleted
    • - mammary ridge development notes The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. After initial development of the milk lines they go into remission.
  • Added
    • + mammary ridge development notes The first manifestation of the mammary gland in many mammals is an elevated ridge or milk line, which then fragments into individual buds in specific regions lateral of the dorsal midline. After initial development of the milk lines they go into remission.
    • + mammary ridge development notes in mouse, mammary gland development begins shortly after mid-gestation (about E10.5); epidermal cells within the milk line become columnar and multilayered, defining a ridge that protrudes above and below the plane of the single-layered primitive epidermis or periderm; by E11.5, five pairs of lens-shaped placodes form along the mammary line at the site of each future nipple.[MP]

Changes for: accessory olfactory bulb

Changes for: vernix caseosa

Changes for: ventral nucleus of posterior commissure

Changes for: thyroid gland

Changes for: tetrapod frontal bone

Changes for: mesoderm blood island

Changes for: thyroid diverticulum

Changes for: central gray substance of midbrain

Changes for: periderm

  • Added
    • + periderm comment Taxon notes: In mice, the first non-basal layer formed at ~E9.5; it is a temporary structure composed of simple squamous epithelium that serves as the first barrier to the embryo’s physical environment, exists throughout the entire keratinocyte stratification process, and sheds off at ~E17, when it is replaced by corneocytes[MP]
    • + periderm has related synonym epitrichium { database cross reference=MP:0013530 }

Changes for: nucleus of midbrain reticular formation

Changes for: nucleus of midbrain tegmentum

Changes for: levator scapulae muscle

Changes for: dorsal pallidum

Changes for: thoracic ganglion

Changes for: superior reticular formation tegmentum

Changes for: rotator muscle of the vertebral column

Changes for: medulla of organ

Changes for: hippocampal commissure

Changes for: pharyngeal branch of vagus nerve

Changes for: obsolete embryonic segment

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 0

February 14, 2015 |

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