Alignment with latest release of mouse anatomy. And tusks!

• NTs for tusks
• aligned additional MA terms
• Added MA xrefs to existing terms for new MA terms
• standardizing naming for stratum pyramidal layers

Ontology Diff Report

Original Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-03-13/uberon.owl

New Ontology

• IRI: http://purl.obolibrary.org/obo/uberon.owl
• VersionIRI: http://purl.obolibrary.org/obo/uberon/releases/2014-03-20/uberon.owl

Report for classes

Class objects lost from source: 0

Class objects new in target: 33

New Class : molar enamel organ

• molar enamel organ has obo namespace uberon
• molar enamel organ label molar enamel organ
• molar enamel organ database cross reference EMAPA:32880
• molar enamel organ EquivalentTo tooth enamel organ and part of some molar tooth
• molar enamel organ database cross reference MA:0003228
• molar enamel organ SubClassOf part of some molar epithelium
• molar enamel organ id UBERON:0015843
• molar enamel organ SubClassOf part of some molar tooth
• molar enamel organ SubClassOf tooth enamel organ

New Class : molar dental papilla

• molar dental papilla has obo namespace uberon
• molar dental papilla SubClassOf develops from some odontogenic mesenchyme of molar
• molar dental papilla SubClassOf odontogenic mesenchyme of molar
• molar dental papilla has exact synonym molar odontogenic papilla { database cross reference=OBOL:automatic }
• molar dental papilla database cross reference EMAPA:32882
• molar dental papilla label molar dental papilla
• molar dental papilla EquivalentTo odontogenic papilla and part of some molar tooth
• molar dental papilla SubClassOf odontogenic papilla
• molar dental papilla id UBERON:0015844
• molar dental papilla SubClassOf part of some molar tooth
• molar dental papilla database cross reference MA:0003232
• molar dental papilla has exact synonym molar tooth odontogenic papilla { database cross reference=OBOL:automatic }

New Class : molar dental lamina

• molar dental lamina SubClassOf part of some molar tooth
• molar dental lamina SubClassOf molar epithelium
• molar dental lamina database cross reference EMAPA:32879
• molar dental lamina EquivalentTo dental lamina and part of some molar tooth
• molar dental lamina has obo namespace uberon
• molar dental lamina database cross reference MA:0003226
• molar dental lamina SubClassOf dental lamina
• molar dental lamina SubClassOf part of some molar epithelium
• molar dental lamina id UBERON:0015841
• molar dental lamina label molar dental lamina

New Class : incisor enamel organ

• incisor enamel organ SubClassOf part of some epithelium of incisor
• incisor enamel organ id UBERON:0015842
• incisor enamel organ SubClassOf tooth enamel organ
• incisor enamel organ label incisor enamel organ
• incisor enamel organ SubClassOf part of some incisor tooth
• incisor enamel organ EquivalentTo tooth enamel organ and part of some incisor tooth
• incisor enamel organ database cross reference MA:0003227
• incisor enamel organ has obo namespace uberon
• incisor enamel organ database cross reference EMAPA:32895

New Class : incisor dental lamina

• incisor dental lamina database cross reference MA:0003225
• incisor dental lamina EquivalentTo dental lamina and part of some incisor tooth
• incisor dental lamina SubClassOf part of some epithelium of incisor
• incisor dental lamina label incisor dental lamina
• incisor dental lamina database cross reference EMAPA:32896
• incisor dental lamina id UBERON:0015840
• incisor dental lamina has obo namespace uberon
• incisor dental lamina SubClassOf dental lamina
• incisor dental lamina SubClassOf epithelium of incisor
• incisor dental lamina SubClassOf part of some incisor tooth

New Class : canine tusk

• canine tusk id UBERON:0015849
• canine tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_9823
• canine tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_41426
• canine tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_9705
• canine tusk SubClassOf cuspid
• canine tusk definition An cuspid tooth that protrudes beyond the mouth. { database cross reference=UBERON:cjm }
• canine tusk SubClassOf tusk
• canine tusk label canine tusk
• canine tusk has obo namespace uberon

New Class : incisor tusk

• incisor tusk label incisor tusk
• incisor tusk definition An incisor tooth that protrudes beyond the mouth. { database cross reference=UBERON:cjm }
• incisor tusk id UBERON:0015848
• incisor tusk SubClassOf incisor tooth
• incisor tusk SubClassOf tusk
• incisor tusk has obo namespace uberon
• incisor tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_9780

New Class : upper left incisor tooth

• upper left incisor tooth SubClassOf in left side of some mouth
• upper left incisor tooth EquivalentTo upper jaw incisor and in left side of some mouth
• upper left incisor tooth SubClassOf upper jaw incisor
• upper left incisor tooth label upper left incisor tooth
• upper left incisor tooth has obo namespace uberon
• upper left incisor tooth SubClassOf lateral structure
• upper left incisor tooth id UBERON:0015847
• upper left incisor tooth database cross reference SCTID:245585000

New Class : incisor mesenchyme

• incisor mesenchyme label incisor mesenchyme
• incisor mesenchyme SubClassOf odontogenic mesenchyme
• incisor mesenchyme id UBERON:0015846
• incisor mesenchyme database cross reference MA:0003229
• incisor mesenchyme has obo namespace uberon
• incisor mesenchyme EquivalentTo odontogenic mesenchyme and part of some incisor tooth
• incisor mesenchyme SubClassOf part of some incisor tooth
• incisor mesenchyme database cross reference EMAPA:32894

New Class : narwhal tusk

• narwhal tusk SubClassOf evolved from some upper left incisor tusk
• narwhal tusk SubClassOf incisor tusk
• narwhal tusk has obo namespace uberon
• narwhal tusk has exact synonym median incisor tusk
• narwhal tusk SubClassOf upper jaw incisor
• narwhal tusk id UBERON:0015852
• narwhal tusk label narwhal tusk
• narwhal tusk SubClassOf intersects midsagittal plane of some mouth
• narwhal tusk definition A upper jaw incisor that protrudes prominently from the mouth as a single median tusk, found in narwhals. { database cross reference=UBERON:cjm }

New Class : dental pulp of median incisor tusk

• dental pulp of median incisor tusk id UBERON:0015853
• dental pulp of median incisor tusk EquivalentTo dental pulp and part of some narwhal tusk
• dental pulp of median incisor tusk SubClassOf incisor dental pulp
• dental pulp of median incisor tusk label dental pulp of median incisor tusk
• dental pulp of median incisor tusk has obo namespace uberon
• dental pulp of median incisor tusk SubClassOf part of some narwhal tusk
• dental pulp of median incisor tusk SubClassOf head connective tissue

New Class : upper left incisor tusk

• upper left incisor tusk SubClassOf upper left incisor tooth
• upper left incisor tusk id UBERON:0015850
• upper left incisor tusk has obo namespace uberon
• upper left incisor tusk label upper left incisor tusk
• upper left incisor tusk SubClassOf in left side of some mouth
• upper left incisor tusk SubClassOf incisor tusk

New Class : upper right incisor tusk

• upper right incisor tusk id UBERON:0015851
• upper right incisor tusk label upper right incisor tusk
• upper right incisor tusk has obo namespace uberon
• upper right incisor tusk SubClassOf lateral structure
• upper right incisor tusk SubClassOf incisor tusk
• upper right incisor tusk SubClassOf upper jaw incisor
• upper right incisor tusk SubClassOf in right side of some mouth

New Class : forebrain ventricular layer

• forebrain ventricular layer SubClassOf part of some forebrain
• forebrain ventricular layer database cross reference EMAPA:32921
• forebrain ventricular layer SubClassOf part of some ventricular system of central nervous system
• forebrain ventricular layer id UBERON:0015829
• forebrain ventricular layer label forebrain ventricular layer
• forebrain ventricular layer has obo namespace uberon
• forebrain ventricular layer SubClassOf ectoderm-derived structure
• forebrain ventricular layer SubClassOf cell layer
• forebrain ventricular layer database cross reference MA:0003190

New Class : cerebellum ventricular layer

• cerebellum ventricular layer has obo namespace uberon
• cerebellum ventricular layer database cross reference EHDAA2:0001153
• cerebellum ventricular layer label cerebellum ventricular layer
• cerebellum ventricular layer SubClassOf cerebellar layer
• cerebellum ventricular layer database cross reference MA:0003187
• cerebellum ventricular layer comment todo - disambiguate between developing and adult structure
• cerebellum ventricular layer database cross reference EMAPA:17790
• cerebellum ventricular layer SubClassOf part of some ventricular system of central nervous system
• cerebellum ventricular layer id UBERON:0015828

New Class : brainstem reticular formation

• brainstem reticular formation SubClassOf regional part of brain
• brainstem reticular formation id UBERON:0015827
• brainstem reticular formation has related synonym brainstem reticular formation { database cross reference=NeuroNames:1223 }
• brainstem reticular formation has related synonym reticular formation of the brainstem { database cross reference=NeuroNames:1223 }
• brainstem reticular formation SubClassOf reticular formation
• brainstem reticular formation EquivalentTo reticular formation and part of some brainstem
• brainstem reticular formation database cross reference MA:0003185
• brainstem reticular formation label brainstem reticular formation
• brainstem reticular formation has obo namespace uberon
• brainstem reticular formation SubClassOf part of some brainstem
• brainstem reticular formation has related synonym brain stem reticular formation { database cross reference=NeuroNames:1223 }

New Class : foregut epithelium

• foregut epithelium SubClassOf part of some foregut
• foregut epithelium has obo namespace uberon
• foregut epithelium EquivalentTo epithelium and part of some foregut
• foregut epithelium label foregut epithelium
• foregut epithelium database cross reference MA:0003204
• foregut epithelium id UBERON:0015833
• foregut epithelium SubClassOf gut epithelium
• foregut epithelium database cross reference EMAPA:32922

New Class : duodenum lamina propria

• duodenum lamina propria label duodenum lamina propria
• duodenum lamina propria database cross reference EMAPA:27255
• duodenum lamina propria SubClassOf part of some duodenum
• duodenum lamina propria has exact synonym duodenal lamina propria { database cross reference=FMA:15972 }
• duodenum lamina propria id UBERON:0015834
• duodenum lamina propria SubClassOf part of some intestinal villus of duodenum
• duodenum lamina propria EquivalentTo lamina propria and part of some duodenum
• duodenum lamina propria has exact synonym lamina propria of duodenum { database cross reference=FMA:15972 }
• duodenum lamina propria has obo namespace uberon
• duodenum lamina propria has exact synonym lamina propria mucosae of duodenum { database cross reference=FMA:15972 }
• duodenum lamina propria SubClassOf part of some duodenal mucosa
• duodenum lamina propria database cross reference FMA:15972
• duodenum lamina propria database cross reference MA:0003209
• duodenum lamina propria SubClassOf lamina propria of small intestine

New Class : incisor dental pulp

• incisor dental pulp label incisor dental pulp
• incisor dental pulp SubClassOf dental pulp
• incisor dental pulp comment AO notes: FMA has classes for very specific sublcasses but no generic grouping at this level
• incisor dental pulp id UBERON:0015837
• incisor dental pulp has obo namespace uberon
• incisor dental pulp SubClassOf part of some incisor tooth
• incisor dental pulp EquivalentTo dental pulp and part of some incisor tooth
• incisor dental pulp database cross reference MA:0003221

New Class : molar epithelium

• molar epithelium SubClassOf part of some molar tooth
• molar epithelium has exact synonym epithelium of molar tooth
• molar epithelium database cross reference EMAPA:32878
• molar epithelium id UBERON:0015839
• molar epithelium EquivalentTo epithelium and part of some molar tooth
• molar epithelium SubClassOf dental epithelium
• molar epithelium database cross reference MA:0003224
• molar epithelium label molar epithelium
• molar epithelium has obo namespace uberon
• molar epithelium has exact synonym epithelium of molar

New Class : molar dental pulp

• molar dental pulp database cross reference MA:0003222
• molar dental pulp label molar dental pulp
• molar dental pulp id UBERON:0015838
• molar dental pulp comment AO notes: FMA has classes for very specific sublcasses but no generic grouping at this level
• molar dental pulp has obo namespace uberon
• molar dental pulp SubClassOf part of some molar tooth
• molar dental pulp EquivalentTo dental pulp and part of some molar tooth
• molar dental pulp SubClassOf dental pulp

New Class : taenia tectum of brain

• taenia tectum of brain definition a continuation ventrally of the supracallosal gyrus beyond the rostrum of the corpus callosum. It is demonstrated histologically by Nissl stain. In the human ( Anthoney-1994 ) and the macaque ( Paxinos-2004 ) it lies on the rostral surface of the lamina terminalis and is considered identical to or part of the paraterminal gyrus. In the rat ( Swanson-1998 ) and the mouse ( Paxinos-2001 ) it is located similarly in relation to the supracallosal gyrus, however, it is a more prominent layered structure that extends rostrally on the medial surface overlying the anterior olfactory nucleus. It is considered part of the olfactory areas (rodent) of the cerebral cortex. In rodents it consists of two parts, the dorsal tenia tecta and the ventral tenia tecta. Note that some authors use the term ‘tenia tecta’ or ‘taenia tecta’ as a synonym for the lateral longitudinal stria ( Riley-1943 ). { database cross reference=http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1870 }
• taenia tectum of brain database cross reference Neurolex:Taenia_tecta
• taenia tectum of brain SubClassOf cerebral hemisphere white matter
• taenia tectum of brain has related synonym tenia tecta { database cross reference=NeuroNames:1870 }
• taenia tectum of brain SubClassOf part of some supracallosal gyrus
• taenia tectum of brain database cross reference MA:0003150
• taenia tectum of brain has exact synonym taenia tecta { database cross reference=MA:0003150 }
• taenia tectum of brain id UBERON:0015800
• taenia tectum of brain has related synonym tenia tectum { database cross reference=NeuroNames:1870 }
• taenia tectum of brain database cross reference NeuroNamesCNID:1523220150
• taenia tectum of brain has obo namespace uberon
• taenia tectum of brain label taenia tectum of brain
• taenia tectum of brain database cross reference NeuroNames:1870
• taenia tectum of brain SubClassOf part of some olfactory bulb
• taenia tectum of brain has related synonym taenia tecta { database cross reference=NeuroNames:1870 , has synonym type=latin term }
• taenia tectum of brain SubClassOf stria of neuraxis

New Class : eye epithelium

• eye epithelium SubClassOf part of some camera-type eye
• eye epithelium has obo namespace uberon
• eye epithelium SubClassOf pigment epithelium of eye
• eye epithelium EquivalentTo epithelium and part of some camera-type eye
• eye epithelium database cross reference MA:0003162
• eye epithelium SubClassOf ecto-epithelium
• eye epithelium label eye epithelium
• eye epithelium id UBERON:0015808

New Class : ear epithelium

• ear epithelium id UBERON:0015807
• ear epithelium database cross reference MA:0003161
• ear epithelium label ear epithelium
• ear epithelium has obo namespace uberon
• ear epithelium database cross reference EMAPA:32800
• ear epithelium EquivalentTo epithelium and part of some ear
• ear epithelium SubClassOf epithelium
• ear epithelium SubClassOf part of some ear

New Class : outer ear epithelium

• outer ear epithelium SubClassOf part of some external ear
• outer ear epithelium label outer ear epithelium
• outer ear epithelium has obo namespace uberon
• outer ear epithelium EquivalentTo epithelium and part of some external ear
• outer ear epithelium database cross reference MA:0003170
• outer ear epithelium SubClassOf ear epithelium
• outer ear epithelium id UBERON:0015814

New Class : middle ear epithelium

• middle ear epithelium id UBERON:0015813
• middle ear epithelium has obo namespace uberon
• middle ear epithelium SubClassOf ear epithelium
• middle ear epithelium database cross reference MA:0003169
• middle ear epithelium EquivalentTo epithelium and part of some middle ear
• middle ear epithelium label middle ear epithelium
• middle ear epithelium database cross reference EMAPA:32883
• middle ear epithelium SubClassOf part of some middle ear

New Class : prostate gland dorsal lobe

• prostate gland dorsal lobe id UBERON:0015792
• prostate gland dorsal lobe SubClassOf part of some prostate gland dorsolateral lobe
• prostate gland dorsal lobe SubClassOf lobe of prostate
• prostate gland dorsal lobe database cross reference MA:0003124
• prostate gland dorsal lobe has obo namespace uberon
• prostate gland dorsal lobe label prostate gland dorsal lobe

New Class : digit connective tissue

• digit connective tissue SubClassOf limb connective tissue
• digit connective tissue database cross reference MA:0003123
• digit connective tissue has obo namespace uberon
• digit connective tissue id UBERON:0015791
• digit connective tissue EquivalentTo connective tissue and part of some digit
• digit connective tissue label digit connective tissue
• digit connective tissue SubClassOf part of some digit

New Class : autopod skin

• autopod skin has obo namespace uberon
• autopod skin label autopod skin
• autopod skin EquivalentTo zone of skin and part of some autopod region
• autopod skin SubClassOf skin of limb
• autopod skin SubClassOf part of some autopod region
• autopod skin has related synonym paw skin { database cross reference=MA:0003120 }
• autopod skin id UBERON:0015790
• autopod skin database cross reference MA:0003120

New Class : liver blood vessel

• liver blood vessel SubClassOf part of some liver
• liver blood vessel SubClassOf mixed endoderm/mesoderm-derived structure
• liver blood vessel EquivalentTo blood vessel and part of some liver
• liver blood vessel id UBERON:0015796
• liver blood vessel label liver blood vessel
• liver blood vessel has obo namespace uberon
• liver blood vessel database cross reference MA:0003137
• liver blood vessel SubClassOf abdomen blood vessel

New Class : right lung lobar bronchus epitheium

• right lung lobar bronchus epitheium id UBERON:0015795
• right lung lobar bronchus epitheium database cross reference MA:0003136
• right lung lobar bronchus epitheium EquivalentTo epithelium and part of some lobar bronchus of right lung
• right lung lobar bronchus epitheium label right lung lobar bronchus epitheium
• right lung lobar bronchus epitheium SubClassOf part of some lobar bronchus of right lung
• right lung lobar bronchus epitheium SubClassOf epithelium of right lung
• right lung lobar bronchus epitheium SubClassOf epithelium of lobar bronchus
• right lung lobar bronchus epitheium has obo namespace uberon

New Class : left lung lobar bronchus epithelium

• left lung lobar bronchus epithelium database cross reference MA:0003135
• left lung lobar bronchus epithelium SubClassOf epithelium of left lung
• left lung lobar bronchus epithelium EquivalentTo epithelium and part of some lobar bronchus of left lung
• left lung lobar bronchus epithelium has obo namespace uberon
• left lung lobar bronchus epithelium SubClassOf part of some lobar bronchus of left lung
• left lung lobar bronchus epithelium label left lung lobar bronchus epithelium
• left lung lobar bronchus epithelium SubClassOf epithelium of lobar bronchus
• left lung lobar bronchus epithelium id UBERON:0015794

New Class : induseum griseum

• induseum griseum database cross reference FMA:62488
• induseum griseum database cross reference MA:0003129
• induseum griseum SubClassOf stria of neuraxis
• induseum griseum id UBERON:0015793
• induseum griseum SubClassOf cerebral hemisphere white matter
• induseum griseum label induseum griseum
• induseum griseum has obo namespace uberon
• induseum griseum SubClassOf part of some supracallosal gyrus
• induseum griseum has exact synonym gray stria of lancisi { database cross reference=FMA:62488 }
• induseum griseum SubClassOf part of some hippocampal formation

Changed Class objects: 124

Changes for: skin of palmar/plantar part of autopod

• Deleted
  • - skin of palmar/plantar part of autopod SubClassOf skin of limb
• Added
  • + skin of palmar/plantar part of autopod SubClassOf autopod skin

Changes for: odontogenic mesenchyme of molar

• Deleted
  • - odontogenic papilla of molar EquivalentTo odontogenic papilla and part of some molar tooth
  • - odontogenic papilla of molar SubClassOf develops from some 1st arch mesenchyme from neural crest
  • - odontogenic papilla of molar SubClassOf mesenchyme from rhombencephalic neural crest
  • - odontogenic papilla of molar SubClassOf odontogenic papilla
  • - odontogenic papilla of molar has exact synonym molar odontogenic papilla { database cross reference=OBOL:automatic }
  • - odontogenic papilla of molar has exact synonym molar tooth odontogenic papilla { database cross reference=OBOL:automatic }
  • - odontogenic papilla of molar has exact synonym odontogenic papilla of molar tooth { database cross reference=OBOL:automatic }
  • - odontogenic papilla of molar label odontogenic papilla of molar
• Added
  • + odontogenic mesenchyme of molar EquivalentTo odontogenic mesenchyme and part of some molar tooth
  • + odontogenic mesenchyme of molar SubClassOf odontogenic mesenchyme
  • + odontogenic mesenchyme of molar database cross reference MA:0003230
  • + odontogenic mesenchyme of molar has exact synonym odontogenic mesenchyme of molar tooth { database cross reference=OBOL:automatic }
  • + odontogenic mesenchyme of molar label odontogenic mesenchyme of molar

Changes for: cardiac valve leaflet

• Added
  • + cardiac valve leaflet database cross reference MA:0003179
  • + cardiac valve leaflet has related synonym valve leaflet { database cross reference=MA:0003179 }

Changes for: epithelium of lens

• Deleted
  • - epithelium of lens SubClassOf ecto-epithelium
  • - epithelium of lens SubClassOf pigment epithelium of eye
• Added
  • + epithelium of lens SubClassOf eye epithelium

Changes for: bone of jaw

• Added
  • + bone of jaw database cross reference MA:0003130

Changes for: autopod pad

• Deleted
  • - autopod pad SubClassOf skin of limb
• Added
  • + autopod pad SubClassOf autopod skin

Changes for: perpendicular plate of ethmoid

• Added
  • + perpendicular plate of ethmoid database cross reference MA:0003126

Changes for: capillary system of liver

• Deleted
  • - capillary system of liver SubClassOf abdomen blood vessel
  • - capillary system of liver SubClassOf mixed endoderm/mesoderm-derived structure
• Added
  • + capillary system of liver SubClassOf liver blood vessel

Changes for: pigmented layer of retina

• Deleted
  • - pigmented layer of retina SubClassOf ecto-epithelium
  • - pigmented layer of retina SubClassOf pigment epithelium of eye
• Added
  • + pigmented layer of retina SubClassOf eye epithelium

Changes for: muscularis mucosae of duodenum

• Added
  • + muscularis mucosae of duodenum database cross reference EMAPA:27243
  • + muscularis mucosae of duodenum database cross reference MA:0003210
  • + muscularis mucosae of duodenum database cross reference MA:0003211

Changes for: corneal epithelium

• Deleted
  • - corneal epithelium SubClassOf ecto-epithelium
  • - corneal epithelium SubClassOf pigment epithelium of eye
• Added
  • + corneal epithelium SubClassOf eye epithelium

Changes for: ciliary epithelium

• Deleted
  • - ciliary epithelium SubClassOf ecto-epithelium
  • - ciliary epithelium SubClassOf pigment epithelium of eye
• Added
  • + ciliary epithelium SubClassOf eye epithelium

Changes for: midbrain reticular formation

• Deleted
  • - midbrain reticular formation SubClassOf reticular formation
• Added
  • + midbrain reticular formation SubClassOf brainstem reticular formation

Changes for: digit skin

• Deleted
  • - digit skin SubClassOf skin of limb
• Added
  • + digit skin SubClassOf autopod skin

Changes for: facial nerve muscle

• Added
  • + facial nerve muscle database cross reference MA:0003160

Changes for: tubotympanic recess epithelium

• Added
  • + tubotympanic recess epithelium SubClassOf middle ear epithelium

Changes for: tympanic membrane epithelium

• Deleted
  • - tympanic membrane epithelium SubClassOf epithelium
• Added
  • + tympanic membrane epithelium SubClassOf middle ear epithelium

Changes for: outer epithelial layer of tympanic membrane

• Added
  • + outer epithelial layer of tympanic membrane SubClassOf outer ear epithelium

Changes for: auditory meatus epithelium

• Added
  • + auditory meatus epithelium SubClassOf outer ear epithelium

Changes for: tympanic cavity epithelium

• Added
  • + tympanic cavity epithelium SubClassOf middle ear epithelium

Changes for: pharyngotympanic tube epithelium

• Added
  • + pharyngotympanic tube epithelium SubClassOf middle ear epithelium
  • + pharyngotympanic tube epithelium database cross reference MA:0003142

Changes for: intercostal vein

• Added
  • + intercostal vein database cross reference MA:0003166

Changes for: lacrimal gland epithelium

• Deleted
  • - lacrimal gland epithelium SubClassOf ecto-epithelium
  • - lacrimal gland epithelium SubClassOf pigment epithelium of eye
• Added
  • + lacrimal gland epithelium SubClassOf eye epithelium

Changes for: gut mesentery

• Added
  • + gut mesentery database cross reference MA:0003203

Changes for: salivary gland epithelium

• Deleted
  • - salivary gland epithelium SubClassOf gut epithelium
• Added
  • + salivary gland epithelium SubClassOf foregut epithelium

Changes for: pontine reticular formation

• Deleted
  • - pontine reticular formation SubClassOf reticular formation
• Added
  • + pontine reticular formation SubClassOf brainstem reticular formation

Changes for: medullary reticular formation

• Deleted
  • - medullary reticular formation SubClassOf reticular formation
• Added
  • + medullary reticular formation SubClassOf brainstem reticular formation

Changes for: radio-ulnar joint

• Added
  • + radio-ulnar joint database cross reference MA:0003145

Changes for: skin of pes

• Added
  • + skin of pes SubClassOf autopod skin

Changes for: skin of manus

• Added
  • + skin of manus SubClassOf autopod skin

Changes for: fasciolar gyrus

• Deleted
  • - fasciolar gyrus has related synonym fasciola cinerea { database cross reference=BTO:0002497 }
• Added
  • + fasciolar gyrus database cross reference MA:0003127
  • + fasciolar gyrus has related synonym FC { database cross reference=NeuroNames:176 , has synonym type=abbreviation }
  • + fasciolar gyrus has related synonym fasciola cinerea { database cross reference=BTO:0002497 , database cross reference=NeuroNames:176 }
  • + fasciolar gyrus has related synonym gyrus fasciolaris { database cross reference=NeuroNames:176 }

Changes for: pedal digit connective tissue

• Added
  • + pedal digit connective tissue SubClassOf digit connective tissue

Changes for: manual digit connective tissue

• Added
  • + manual digit connective tissue SubClassOf digit connective tissue

Changes for: venous system of brain

• Added
  • + venous system of brain database cross reference MA:0003184

Changes for: hepatic sinusoid

• Deleted
  • - hepatic sinusoid SubClassOf abdomen blood vessel
  • - hepatic sinusoid SubClassOf mixed endoderm/mesoderm-derived structure
• Added
  • + hepatic sinusoid SubClassOf liver blood vessel

Changes for: epithelium of stomach

• Deleted
  • - epithelium of stomach SubClassOf gut epithelium
• Added
  • + epithelium of stomach SubClassOf foregut epithelium

Changes for: dentate gyrus subgranular zone

• Deleted
  • - subgranular zone label subgranular zone
• Added
  • + dentate gyrus subgranular zone database cross reference MA:0003149
  • + dentate gyrus subgranular zone has exact synonym subgranular zone
  • + dentate gyrus subgranular zone label dentate gyrus subgranular zone

Changes for: gland of gut

• Added
  • + gland of gut database cross reference MA:0003202

Changes for: cartilage of nasal septum

• Added
  • + cartilage of nasal septum database cross reference MA:0003138

Changes for: lobar bronchus of left lung

• Added
  • + lobar bronchus of left lung database cross reference MA:0003133

Changes for: lobar bronchus of right lung

• Added
  • + lobar bronchus of right lung database cross reference MA:0003134

Changes for: facial bone

• Deleted
  • - facial bone has exact synonym bone of viscerocranium { database cross reference=OBOL:automatic }
  • - facial bone has exact synonym viscerocranium bone { database cross reference=OBOL:automatic }
• Added
  • + facial bone database cross reference MA:0003159
  • + facial bone has related synonym bone of viscerocranium { database cross reference=OBOL:automatic }
  • + facial bone has related synonym viscerocranium bone { database cross reference=OBOL:automatic }

Changes for: intercostal muscle

• Added
  • + intercostal muscle database cross reference MA:0003165

Changes for: hepatic vein

• Deleted
  • - hepatic vein SubClassOf mixed endoderm/mesoderm-derived structure
• Added
  • + hepatic vein SubClassOf liver blood vessel

Changes for: splenic artery

• Added
  • + splenic artery database cross reference MA:0003177

Changes for: skeletal muscle organ

• Added
  • + skeletal muscle organ database cross reference MA:0003148

Changes for: cerebral cortex ventricular layer

• Added
  • + cerebral cortex ventricular layer database cross reference MA:0003189

Changes for: cerebral cortex subventricular zone

• Added
  • + cerebral cortex subventricular zone database cross reference MA:0003188

Changes for: pyramidal layer of CA2

• Deleted
  • - CA2 stratum pyramidale hippocampi label CA2 stratum pyramidale hippocampi
• Added
  • + pyramidal layer of CA2 has exact synonym field CA2, pyramidal layer { database cross reference=ABA:CA2sp }
  • + pyramidal layer of CA2 label pyramidal layer of CA2

Changes for: pyramidal layer of CA1

• Deleted
  • - CA1 stratum pyramidale hippocampi label CA1 stratum pyramidale hippocampi
• Added
  • + pyramidal layer of CA1 database cross reference MA:0003186
  • + pyramidal layer of CA1 has exact synonym field CA1, pyramidal layer { database cross reference=ABA:CA1sp }
  • + pyramidal layer of CA1 has related synonym CA1 stratum pyramidale hippocampi { database cross reference=NIF_GrossAnatomy:birnlex_4110 }
  • + pyramidal layer of CA1 label pyramidal layer of CA1

Changes for: pyramidal layer of CA3

• Deleted
  • - CA3 stratum pyramidale hippocampi label CA3 stratum pyramidale hippocampi
• Added
  • + pyramidal layer of CA3 has exact synonym field CA3, pyramidal layer { database cross reference=ABA:CA3sp }
  • + pyramidal layer of CA3 label pyramidal layer of CA3

Changes for: distal sesamoid impar ligament

• Deleted
  • - distal sesamoid impar ligament SubClassOf limb connective tissue
• Added
  • + distal sesamoid impar ligament SubClassOf digit connective tissue

Changes for: iris epithelium

• Deleted
  • - iris epithelium SubClassOf ecto-epithelium
  • - iris epithelium SubClassOf pigment epithelium of eye
• Added
  • + iris epithelium SubClassOf eye epithelium

Changes for: scleral endothelium

• Deleted
  • - scleral endothelium SubClassOf ecto-epithelium
  • - scleral endothelium SubClassOf pigment epithelium of eye
• Added
  • + scleral endothelium SubClassOf eye epithelium

Changes for: gut epithelium

• Added
  • + gut epithelium database cross reference MA:0003201

Changes for: axial muscle

• Added
  • + axial muscle database cross reference MA:0003153

Changes for: prostate gland lateral lobe

• Added
  • + prostate gland lateral lobe database cross reference MA:0003125

Changes for: odontogenic mesenchyme

• Added
  • + odontogenic mesenchyme database cross reference MA:0003152

Changes for: spinal cord lateral wall

• Added
  • + spinal cord lateral wall database cross reference MA:0003192

Changes for: dental epithelium

• Added
  • + dental epithelium database cross reference MA:0003151

Changes for: lower eyelid epithelium

• Deleted
  • - lower eyelid epithelium SubClassOf ecto-epithelium
  • - lower eyelid epithelium SubClassOf pigment epithelium of eye
• Added
  • + lower eyelid epithelium SubClassOf eye epithelium

Changes for: upper eyelid epithelium

• Deleted
  • - upper eyelid epithelium SubClassOf ecto-epithelium
  • - upper eyelid epithelium SubClassOf pigment epithelium of eye
• Added
  • + upper eyelid epithelium SubClassOf eye epithelium

Changes for: ileal epithelium

• Added
  • + ileal epithelium database cross reference MA:0003217

Changes for: duodenal epithelium

• Added
  • + duodenal epithelium database cross reference MA:0003208

Changes for: neural tube ventricular layer

• Deleted
  • - neural tube ventricular layer comment consider merging with ‘ventricular zone’
• Added
  • + neural tube ventricular layer comment consider merging with ‘ventricular zone’; note that the MA class probably does not belong here, as this is an embryonic structure
  • + neural tube ventricular layer database cross reference MA:0003193

Changes for: alveolar ridge

• Deleted
  • - alveolar ridge has exact synonym alveolar process { database cross reference=GAID:215 }
• Added
  • + alveolar ridge database cross reference MA:0003119
  • + alveolar ridge has exact synonym alveolar process

Changes for: proximal radio-ulnar joint

• Added
  • + proximal radio-ulnar joint database cross reference MA:0003146

Changes for: lamina propria of mucosa of colon

• Added
  • + lamina propria of mucosa of colon database cross reference MA:0003196

Changes for: muscularis mucosae of colon

• Added
  • + muscularis mucosae of colon database cross reference MA:0003197
  • + muscularis mucosae of colon database cross reference MA:0003198

Changes for: prevertebral muscle of neck

• Deleted
  • - prevertebral muscle label prevertebral muscle
• Added
  • + prevertebral muscle of neck SubClassOf attaches to some vertebra
  • + prevertebral muscle of neck SubClassOf skeletal muscle organ
  • + prevertebral muscle of neck database cross reference MA:0003144
  • + prevertebral muscle of neck has exact synonym prevertebral muscle { database cross reference=FMA:32514 }
  • + prevertebral muscle of neck label prevertebral muscle of neck

Changes for: skin muscle

• Added
  • + skin muscle database cross reference MA:0003139
  • + skin muscle has alternative id UBERON:0015797
  • + skin muscle has exact synonym integumental system muscle { database cross reference=MA:0003139 }

Changes for: epithelium of otic placode

• Deleted
  • - epithelium of otic placode SubClassOf epithelium
• Added
  • + epithelium of otic placode SubClassOf ear epithelium

Changes for: life cycle

• Deleted
  • - life cycle database cross reference FBdv_root:00000000
• Added
  • + life cycle database cross reference FBdv:00000000

Changes for: epithelium of left lung

• Added
  • + epithelium of left lung database cross reference MA:0003131

Changes for: epithelium of right lung

• Added
  • + epithelium of right lung database cross reference MA:0003132

Changes for: epithelium of midgut

• Added
  • + epithelium of midgut database cross reference MA:0003205

Changes for: epithelium of hindgut

• Added
  • + epithelium of hindgut database cross reference MA:0003206

Changes for: epithelium of rectum

• Added
  • + epithelium of rectum database cross reference MA:0003219

Changes for: epithelium of incisor

• Added
  • + epithelium of incisor database cross reference MA:0003223

Changes for: mucosa of rectum

• Added
  • + mucosa of rectum database cross reference MA:0003218

Changes for: submucosa of colon

• Added
  • + submucosa of colon database cross reference MA:0003200

Changes for: submucosa of duodenum

• Added
  • + submucosa of duodenum database cross reference MA:0003213

Changes for: serosa of colon

• Added
  • + serosa of colon database cross reference MA:0003199

Changes for: serosa of duodenum

• Added
  • + serosa of duodenum database cross reference MA:0003212

Changes for: odontogenic papilla of incisor

• Deleted
  • - odontogenic papilla of incisor SubClassOf develops from some 1st arch mesenchyme from neural crest
  • - odontogenic papilla of incisor SubClassOf mesenchyme from rhombencephalic neural crest
  • - odontogenic papilla of incisor has exact synonym incisor mesenchyme { database cross reference=https://orcid.org/0000-0002-6601-2165 }
• Added
  • + odontogenic papilla of incisor SubClassOf develops from some incisor mesenchyme
  • + odontogenic papilla of incisor SubClassOf incisor mesenchyme
  • + odontogenic papilla of incisor database cross reference MA:0003231

Changes for: duodenal mucosa

• Added
  • + duodenal mucosa database cross reference MA:0003207

Changes for: colonic mucosa

• Added
  • + colonic mucosa database cross reference MA:0003194

Changes for: alveolar process of maxilla

• Added
  • + alveolar process of maxilla has exact synonym alveolar process of maxilla

Changes for: caudal region of vertebral column

• Added
  • + caudal region of vertebral column database cross reference MA:0003158
  • + caudal region of vertebral column has exact synonym axial skeleton tail region { database cross reference=MA:0003158 }

Changes for: sacral region of vertebral column

• Added
  • + sacral region of vertebral column database cross reference MA:0003157
  • + sacral region of vertebral column has exact synonym axial skeleton sacral region { database cross reference=MA:0003157 }

Changes for: lumbar region of vertebral column

• Added
  • + lumbar region of vertebral column database cross reference MA:0003156
  • + lumbar region of vertebral column has exact synonym axial skeleton lumbar region { database cross reference=MA:0003156 }

Changes for: thoracic region of vertebral column

• Added
  • + thoracic region of vertebral column database cross reference MA:0003155
  • + thoracic region of vertebral column has exact synonym axial skeleton thoracic region { database cross reference=MA:0003155 }

Changes for: cervical region of vertebral column

• Added
  • + cervical region of vertebral column database cross reference MA:0003154
  • + cervical region of vertebral column has exact synonym axial skeleton cervical region { database cross reference=MA:0003154 }

Changes for: midbrain raphe nuclei

• Added
  • + midbrain raphe nuclei database cross reference MA:0003147

Changes for: raphe nuclei

• Added
  • + raphe nuclei database cross reference MA:0003147

Changes for: dentate gyrus molecular layer

• Added
  • + dentate gyrus molecular layer database cross reference MA:0003122

Changes for: left hepatic artery

• Deleted
  • - left hepatic artery SubClassOf abdomen blood vessel
  • - left hepatic artery SubClassOf mixed endoderm/mesoderm-derived structure
• Added
  • + left hepatic artery SubClassOf liver blood vessel

Changes for: right hepatic artery

• Deleted
  • - right hepatic artery SubClassOf abdomen blood vessel
  • - right hepatic artery SubClassOf mixed endoderm/mesoderm-derived structure
• Added
  • + right hepatic artery SubClassOf liver blood vessel

Changes for: skin of metapodial pad

• Deleted
  • - skin of metapodial pad SubClassOf skin of limb
• Added
  • + skin of metapodial pad SubClassOf autopod skin

Changes for: dental follicle

• Added
  • + dental follicle database cross reference MA:0003121

Changes for: lung parenchyma

• Added
  • + lung parenchyma database cross reference MA:0003168

Changes for: olfactory bulb outer nerve layer

• Deleted
  • - olfactory bulb outer nerve layer SubClassOf part of some olfactory bulb
  • - olfactory bulb outer nerve layer definition the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia { database cross reference=MP:0010057 }
• Added
  • + olfactory bulb outer nerve layer SubClassOf in superficial part of some olfactory bulb
  • + olfactory bulb outer nerve layer database cross reference MA:0003191
  • + olfactory bulb outer nerve layer database cross reference NIF_GrossAnatomy:nlx_anat_1005010
  • + olfactory bulb outer nerve layer definition Superficial layer of the main olfactory bulb containing axons from the olfactory nerve and glial cells { database cross reference=NIF_GrossAnatomy:nlx_anat_1005010 }
  • + olfactory bulb outer nerve layer external definition the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia { source=MP:0010057 }
  • + olfactory bulb outer nerve layer has alternative id UBERON:0015830
  • + olfactory bulb outer nerve layer has exact synonym olfactory bulb main olfactory nerve layer { database cross reference=NIF_GrossAnatomy:nlx_anat_1005010 }
  • + olfactory bulb outer nerve layer has exact synonym olfactory bulb olfactory nerve layer { database cross reference=MA:0003191 }

Changes for: pinna surface epithelium

• Deleted
  • - pinna surface epithelium SubClassOf epithelium
• Added
  • + pinna surface epithelium SubClassOf outer ear epithelium

Changes for: inner ear epithelium

• Added
  • + inner ear epithelium SubClassOf ear epithelium

Changes for: jejunal mucosa

• Added
  • + jejunal mucosa database cross reference MA:0003214

Changes for: colonic epithelium

• Added
  • + colonic epithelium database cross reference MA:0003195

Changes for: pharyngeal mucosa

• Added
  • + pharyngeal mucosa database cross reference MA:0003143

Changes for: ileal mucosa

• Added
  • + ileal mucosa database cross reference MA:0003216

Changes for: jejunal epithelium

• Added
  • + jejunal epithelium database cross reference MA:0003215

Changes for: lower jaw incisor odontogenic papilla

• Added
  • + lower jaw incisor odontogenic papilla SubClassOf mesenchyme from rhombencephalic neural crest

Changes for: upper jaw incisor odontogenic papilla

• Added
  • + upper jaw incisor odontogenic papilla SubClassOf mesenchyme from rhombencephalic neural crest

Changes for: lower jaw molar odontogenic papilla

• Deleted
  • - lower jaw molar odontogenic papilla SubClassOf odontogenic papilla of molar
• Added
  • + lower jaw molar odontogenic papilla SubClassOf mesenchyme from rhombencephalic neural crest
  • + lower jaw molar odontogenic papilla SubClassOf molar dental papilla

Changes for: upper jaw molar odontogenic papilla

• Deleted
  • - upper jaw molar odontogenic papilla SubClassOf odontogenic papilla of molar
• Added
  • + upper jaw molar odontogenic papilla SubClassOf mesenchyme from rhombencephalic neural crest
  • + upper jaw molar odontogenic papilla SubClassOf molar dental papilla

Changes for: anterior chamber epithelium

• Deleted
  • - anterior chamber epithelium SubClassOf ecto-epithelium
  • - anterior chamber epithelium SubClassOf pigment epithelium of eye
• Added
  • + anterior chamber epithelium SubClassOf eye epithelium

Changes for: lower jaw molar epithelium

• Deleted
  • - lower jaw molar epithelium SubClassOf dental epithelium
• Added
  • + lower jaw molar epithelium SubClassOf molar epithelium

Changes for: upper jaw molar epithelium

• Deleted
  • - upper jaw molar epithelium SubClassOf dental epithelium
• Added
  • + upper jaw molar epithelium SubClassOf molar epithelium

Changes for: tricuspid valve leaflet

• Added
  • + tricuspid valve leaflet database cross reference MA:0003180

Changes for: vagal neural crest

• Deleted
  • - vagal neural crest has exact synonym post-otic neural crest { database cross reference=ZFA:0000818 }
• Added
  • + vagal neural crest comment In chicken fate mapping studies it was found to originate from neural crest residing between Somite 1-7 (S1-7); In mouse it is considered to be derived from rhombencephalic (post otic) neural crest cells and trunk neural crest cells (anterior to S5)[filemaps.com]
  • + vagal neural crest has related synonym post-otic neural crest { database cross reference=ZFA:0000818 }

Changes for: greater omentum

• Added
  • + greater omentum database cross reference MA:0003128

Changes for: panniculus carnosus

• Added
  • + panniculus carnosus database cross reference MA:0003141

Changes for: central vein of liver

• Deleted
  • - central vein of liver SubClassOf mixed endoderm/mesoderm-derived structure
• Added
  • + central vein of liver SubClassOf liver blood vessel

Changes for: gular fold

• Deleted
  • - gular fold definition A transverse fold of skin across the throat (Peters 1964). { database cross reference=Wikipedia:Gular_fold , database cross reference=Wikipedia:Gular_skin , database cross reference=http://imnh.isu.edu/digitalatlas/bio/glsry.htm , database cross reference=http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764 }
• Added
  • + gular fold definition A transverse fold of skin across the throat (Peters 1964). { database cross reference=http://imnh.isu.edu/digitalatlas/bio/glsry.htm , database cross reference=http://sourceforge.net/tracker/?func=detail&aid=3414172&group_id=76834&atid=994764 }

Changes for: tusk

• Deleted
  • - tusk comment Consider adding separate classes for incisor and canine tusks. E.g. narwhal tusk = left upper incisor[Kardong]
  • - tusk definition Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal’s sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical openings of the roots of the teeth { database cross reference=Wikipedia:Tusk }
  • - tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_40151
  • - tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_41426
  • - tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_9705
  • - tusk present in taxon http://purl.obolibrary.org/obo/NCBITaxon_9823
• Added
  • + tusk definition A calcareous tooth that is elongated and protrudes from the mouth. { database cross reference=UBERON:cjm }
  • + tusk external definition Elongated, continuously growing front teeth, usually but not always in pairs, that protrude well beyond the mouth of certain mammal species. They are most commonly canines, as with warthogs, pig, and walruses, or, in the case of elephants and narwhals, elongated incisors. In most tusked species both the males and the females have tusks although the males are larger. Tusks are generally curved, though the narwhal’s sole tusk is straight and has a helical structure. In the elephant, the tusks were originally second incisors. Continuous growth is enabled by formative tissues in the apical oproperty_value external_definitionof the roots of the teeth { source=Wikipedia:Tusk }

Changes for: epithelium of conjunctiva

• Deleted
  • - epithelium of conjunctiva SubClassOf ecto-epithelium
  • - epithelium of conjunctiva SubClassOf pigment epithelium of eye
• Added
  • + epithelium of conjunctiva SubClassOf eye epithelium

Report for properties

ObjectProperty objects lost from source: 0

ObjectProperty objects new in target: 0

Changed ObjectProperty objects: 0

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